RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 USP21Q9UK80 565 aa31.34■■■□□ 2.61
C9orf3-209ENST00000460573 RBM6P78332 1123 aaKnown RBP31.32■■■□□ 2.6
C9orf3-209ENST00000460573 ACEP12821 1306 aa31.31■■■□□ 2.6
C9orf3-209ENST00000460573 LMOD2Q6P5Q4 547 aa31.31■■■□□ 2.6
C9orf3-209ENST00000460573 NINLQ9Y2I6 1382 aa31.3■■■□□ 2.6
C9orf3-209ENST00000460573 CDK12Q9NYV4 1490 aaPredicted RBP31.29■■■□□ 2.6
C9orf3-209ENST00000460573 MARF1Q9Y4F3 1742 aaKnown RBP31.29■■■□□ 2.6
C9orf3-209ENST00000460573 PLEKHG5O94827 1062 aa31.28■■■□□ 2.6
C9orf3-209ENST00000460573 TRPC5Q9UL62 973 aaPredicted RBP31.28■■■□□ 2.6
C9orf3-209ENST00000460573 SPATA31A3Q5VYP0 1347 aa31.27■■■□□ 2.6
C9orf3-209ENST00000460573 ZNF692Q9BU19 519 aaPredicted RBP31.27■■■□□ 2.6
C9orf3-209ENST00000460573 SBNO1A3KN83 1393 aa31.27■■■□□ 2.6
C9orf3-209ENST00000460573 TMC1Q8TDI8 760 aa31.26■■■□□ 2.59
C9orf3-209ENST00000460573 BRD4O60885 1362 aaPredicted RBP31.25■■■□□ 2.59
C9orf3-209ENST00000460573 TNS3Q68CZ2 1445 aa31.24■■■□□ 2.59
C9orf3-209ENST00000460573 SLC12A5Q9H2X9 1139 aa31.22■■■□□ 2.59
C9orf3-209ENST00000460573 FNBP4Q8N3X1 1017 aaPredicted RBP31.21■■■□□ 2.59
C9orf3-209ENST00000460573 TERF2IPQ9NYB0 399 aa31.21■■■□□ 2.59
C9orf3-209ENST00000460573 CPSF1Q10570 1443 aaKnown RBP31.21■■■□□ 2.59
C9orf3-209ENST00000460573 HDGFL2Q7Z4V5 671 aaPredicted RBP31.2■■■□□ 2.59
C9orf3-209ENST00000460573 RGS12O14924 1447 aa31.2■■■□□ 2.59
C9orf3-209ENST00000460573 ARHGEF10O15013 1369 aa31.18■■■□□ 2.58
C9orf3-209ENST00000460573 USP6P35125 1406 aa31.18■■■□□ 2.58
C9orf3-209ENST00000460573 TRPM3Q9HCF6 1732 aaPredicted RBP31.18■■■□□ 2.58
C9orf3-209ENST00000460573 UPF1Q92900 1129 aaKnown RBP eCLIP31.16■■■□□ 2.58
C9orf3-209ENST00000460573 KTN1Q86UP2 1357 aaKnown RBP31.16■■■□□ 2.58
C9orf3-209ENST00000460573 AKAP12Q02952 1782 aa31.15■■■□□ 2.58
C9orf3-209ENST00000460573 PAK3O75914 559 aaPredicted RBP31.15■■■□□ 2.58
C9orf3-209ENST00000460573 CD163L1Q9NR16 1453 aa31.14■■■□□ 2.58
C9orf3-209ENST00000460573 C11orf95C9JLR9 678 aaPredicted RBP31.14■■■□□ 2.58
C9orf3-209ENST00000460573 POLR3GLQ9BT43 218 aa31.13■■■□□ 2.57
C9orf3-209ENST00000460573 ATRNO75882 1429 aa31.13■■■□□ 2.57
C9orf3-209ENST00000460573 CABLES1Q8TDN4 633 aa31.12■■■□□ 2.57
C9orf3-209ENST00000460573 ANKRD36BQ8N2N9 1353 aa31.12■■■□□ 2.57
C9orf3-209ENST00000460573 A0A1W2PP64 1363 aa31.11■■■□□ 2.57
C9orf3-209ENST00000460573 SSH2Q76I76 1423 aa31.11■■■□□ 2.57
C9orf3-209ENST00000460573 ALS2Q96Q42 1657 aa31.09■■■□□ 2.57
C9orf3-209ENST00000460573 KIF7Q2M1P5 1343 aa31.09■■■□□ 2.57
C9orf3-209ENST00000460573 TTC21AQ8NDW8 1320 aa31.09■■■□□ 2.57
C9orf3-209ENST00000460573 MON2Q7Z3U7 1717 aa31.09■■■□□ 2.57
C9orf3-209ENST00000460573 UNC5CLQ8IV45 518 aa31.08■■■□□ 2.57
C9orf3-209ENST00000460573 MYOM1P52179 1685 aa31.08■■■□□ 2.57
C9orf3-209ENST00000460573 BCL9LQ86UU0 1499 aa31.08■■■□□ 2.57
C9orf3-209ENST00000460573 EDC4Q6P2E9 1401 aaKnown RBP31.07■■■□□ 2.57
C9orf3-209ENST00000460573 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.07■■■□□ 2.56
C9orf3-209ENST00000460573 TTC21BQ7Z4L5 1316 aa31.07■■■□□ 2.56
C9orf3-209ENST00000460573 ABTB2Q8N961 1025 aa31.06■■■□□ 2.56
C9orf3-209ENST00000460573 CCDC9Q9Y3X0 531 aaKnown RBP31.06■■■□□ 2.56
C9orf3-209ENST00000460573 ABCA3Q99758 1704 aa31.06■■■□□ 2.56
C9orf3-209ENST00000460573 GJD4Q96KN9 370 aaPredicted RBP31.05■■■□□ 2.56
C9orf3-209ENST00000460573 NRKQ7Z2Y5 1582 aa31.04■■■□□ 2.56
C9orf3-209ENST00000460573 CCDC7Q96M83 1385 aa31.03■■■□□ 2.56
C9orf3-209ENST00000460573 NLRP13Q86W25 1043 aa31.02■■■□□ 2.56
C9orf3-209ENST00000460573 PLCH1Q4KWH8 1693 aa31.02■■■□□ 2.56
C9orf3-209ENST00000460573 SLIT2O94813 1529 aa31.02■■■□□ 2.56
C9orf3-209ENST00000460573 WASHC2AQ641Q2 1341 aa31■■■□□ 2.55
C9orf3-209ENST00000460573 NWD2Q9ULI1 1742 aa30.98■■■□□ 2.55
C9orf3-209ENST00000460573 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.98■■■□□ 2.552e-6■□□□□ 9.3
C9orf3-209ENST00000460573 NLRP6P59044 892 aa30.97■■■□□ 2.55
C9orf3-209ENST00000460573 NUTM2GQ5VZR2 741 aa30.95■■■□□ 2.55
C9orf3-209ENST00000460573 PIK3C2AO00443 1686 aa30.94■■■□□ 2.54
C9orf3-209ENST00000460573 A0A0G2JS52 829 aa30.94■■■□□ 2.54
C9orf3-209ENST00000460573 MYT1Q01538 1121 aa30.94■■■□□ 2.54
C9orf3-209ENST00000460573 PANK3Q9H999 370 aa30.94■■■□□ 2.54
C9orf3-209ENST00000460573 USP19O94966 1318 aa30.94■■■□□ 2.54
C9orf3-209ENST00000460573 USP31Q70CQ4 1352 aa30.93■■■□□ 2.54
C9orf3-209ENST00000460573 CARD14Q9BXL6 1004 aa30.93■■■□□ 2.54
C9orf3-209ENST00000460573 NSD3Q9BZ95 1437 aa30.91■■■□□ 2.54
C9orf3-209ENST00000460573 VPS72Q15906 364 aa30.91■■■□□ 2.54
C9orf3-209ENST00000460573 GLI3P10071 1580 aa30.91■■■□□ 2.54
C9orf3-209ENST00000460573 FAM83GA6ND36 823 aa30.9■■■□□ 2.54
C9orf3-209ENST00000460573 NME9Q86XW9 330 aa30.9■■■□□ 2.54
C9orf3-209ENST00000460573 CRYBG1Q9Y4K1 1723 aa30.9■■■□□ 2.54
C9orf3-209ENST00000460573 COL14A1Q05707 1796 aaKnown RBP30.89■■■□□ 2.54
C9orf3-209ENST00000460573 BTG4Q9NY30 223 aa30.89■■■□□ 2.54
C9orf3-209ENST00000460573 PRDM11Q9NQV5 511 aa30.88■■■□□ 2.53
C9orf3-209ENST00000460573 USP54Q70EL1 1684 aa30.87■■■□□ 2.53
C9orf3-209ENST00000460573 KCNH5Q8NCM2 988 aa30.87■■■□□ 2.53
C9orf3-209ENST00000460573 FYB1O15117 783 aa30.86■■■□□ 2.53
C9orf3-209ENST00000460573 GCP02774 474 aa30.86■■■□□ 2.53
C9orf3-209ENST00000460573 CGNL1Q0VF96 1302 aa30.86■■■□□ 2.53
C9orf3-209ENST00000460573 PHRF1Q9P1Y6 1649 aaKnown RBP30.86■■■□□ 2.53
C9orf3-209ENST00000460573 SLIT3O75094 1523 aa30.85■■■□□ 2.53
C9orf3-209ENST00000460573 COG3Q96JB2 828 aa30.84■■■□□ 2.53
C9orf3-209ENST00000460573 SEPT12Q8IYM1 358 aa30.83■■■□□ 2.53
C9orf3-209ENST00000460573 KNSTRNQ9Y448 316 aa30.83■■■□□ 2.53
C9orf3-209ENST00000460573 OVOS2A0A0J9YW53 1432 aa30.82■■■□□ 2.52
C9orf3-209ENST00000460573 OVOS2Q6IE36 1432 aa30.82■■■□□ 2.52
C9orf3-209ENST00000460573 ZRANB1Q9UGI0 708 aa30.82■■■□□ 2.52
C9orf3-209ENST00000460573 NRAPQ86VF7 1730 aa30.81■■■□□ 2.52
C9orf3-209ENST00000460573 BRWD3Q6RI45 1802 aa30.81■■■□□ 2.52
C9orf3-209ENST00000460573 CCDC125Q86Z20 511 aa30.8■■■□□ 2.52
C9orf3-209ENST00000460573 GGNBP2Q9H3C7 697 aa30.8■■■□□ 2.52
C9orf3-209ENST00000460573 KIF20BQ96Q89 1820 aa30.8■■■□□ 2.52
C9orf3-209ENST00000460573 CPDO75976 1380 aa30.79■■■□□ 2.52
C9orf3-209ENST00000460573 ZC3H6P61129 1189 aaKnown RBP30.78■■■□□ 2.52
C9orf3-209ENST00000460573 SF3B2Q13435 895 aaKnown RBP30.78■■■□□ 2.52
C9orf3-209ENST00000460573 KIAA0232Q92628 1395 aa30.78■■■□□ 2.52
C9orf3-209ENST00000460573 PER1O15534 1290 aaPredicted RBP30.77■■■□□ 2.52
C9orf3-209ENST00000460573 NSD2O96028 1365 aa30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms