RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 DCCP43146 1447 aa15.07■□□□□ 0
SCN9A-205ENST00000454569 ATF3P18847 181 aa15.07■□□□□ 0
SCN9A-205ENST00000454569 ESCO1Q5FWF5 840 aa15.07■□□□□ 0
SCN9A-205ENST00000454569 PHF8Q9UPP1 1060 aa15.06■□□□□ 0
SCN9A-205ENST00000454569 POLR3AO14802 1390 aaPredicted RBP15.05■□□□□ -0
SCN9A-205ENST00000454569 KTN1Q86UP2 1357 aaKnown RBP15.05■□□□□ -0
SCN9A-205ENST00000454569 HDGFL2Q7Z4V5 671 aaPredicted RBP15.05■□□□□ -0
SCN9A-205ENST00000454569 DDX17Q92841 729 aaKnown RBP15.05■□□□□ -0
SCN9A-205ENST00000454569 PRKRIP1Q9H875 184 aaPredicted RBP15.05■□□□□ -0
SCN9A-205ENST00000454569 TERF2IPQ9NYB0 399 aa15.05■□□□□ -0
SCN9A-205ENST00000454569 KNSTRNQ9Y448 316 aa15.05■□□□□ -0
SCN9A-205ENST00000454569 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.04■□□□□ -0
SCN9A-205ENST00000454569 ZRANB1Q9UGI0 708 aa15.04■□□□□ -0
SCN9A-205ENST00000454569 CADPS2Q86UW7 1296 aa15.03■□□□□ -0
SCN9A-205ENST00000454569 NGDNQ8NEJ9 315 aaKnown RBP15.03■□□□□ -0
SCN9A-205ENST00000454569 ANKRD26Q9UPS8 1709 aa15.03■□□□□ -0
SCN9A-205ENST00000454569 USP6P35125 1406 aa15.03■□□□□ -0
SCN9A-205ENST00000454569 SSH2Q76I76 1423 aa15.03■□□□□ -0
SCN9A-205ENST00000454569 FYB1O15117 783 aa15.02■□□□□ -0
SCN9A-205ENST00000454569 ANP32CO43423 234 aa15.02■□□□□ -0
SCN9A-205ENST00000454569 XPCQ01831 940 aaPredicted RBP15.02■□□□□ -0
SCN9A-205ENST00000454569 CCDC184Q52MB2 194 aa15.02■□□□□ -0
SCN9A-205ENST00000454569 MARF1Q9Y4F3 1742 aaKnown RBP15.02□□□□□ -0.01
SCN9A-205ENST00000454569 FOXO3O43524 673 aa15.02□□□□□ -0.01
SCN9A-205ENST00000454569 SLAIN2Q9P270 581 aa15.02□□□□□ -0.01
SCN9A-205ENST00000454569 KIF1AQ12756 1690 aa15.01□□□□□ -0.01
SCN9A-205ENST00000454569 NME9Q86XW9 330 aa15.01□□□□□ -0.01
SCN9A-205ENST00000454569 GGNBP2Q9H3C7 697 aa15.01□□□□□ -0.01
SCN9A-205ENST00000454569 EDC4Q6P2E9 1401 aaKnown RBP15.01□□□□□ -0.01
SCN9A-205ENST00000454569 TRPM3Q9HCF6 1732 aaPredicted RBP15.01□□□□□ -0.01
SCN9A-205ENST00000454569 TTC21BQ7Z4L5 1316 aa15□□□□□ -0.01
SCN9A-205ENST00000454569 ZNF692Q9BU19 519 aaPredicted RBP15□□□□□ -0.01
SCN9A-205ENST00000454569 PIK3C2AO00443 1686 aa15□□□□□ -0.01
SCN9A-205ENST00000454569 PARD3Q8TEW0 1356 aa15□□□□□ -0.01
SCN9A-205ENST00000454569 BRINP3Q76B58 766 aa14.99□□□□□ -0.01
SCN9A-205ENST00000454569 SPDYE4A6NLX3 237 aa14.98□□□□□ -0.01
SCN9A-205ENST00000454569 FBLN1P23142 703 aa14.98□□□□□ -0.01
SCN9A-205ENST00000454569 NPC1L1Q9UHC9 1359 aa14.98□□□□□ -0.01
SCN9A-205ENST00000454569 MAP2P11137 1827 aaKnown RBP14.98□□□□□ -0.01
SCN9A-205ENST00000454569 CGNL1Q0VF96 1302 aa14.98□□□□□ -0.01
SCN9A-205ENST00000454569 ROBO1Q9Y6N7 1651 aa14.97□□□□□ -0.01
SCN9A-205ENST00000454569 TNNT2P45379 298 aaPredicted RBP14.96□□□□□ -0.01
SCN9A-205ENST00000454569 PSME1Q06323 249 aa14.96□□□□□ -0.01
SCN9A-205ENST00000454569 NUTM2GQ5VZR2 741 aa14.95□□□□□ -0.02
SCN9A-205ENST00000454569 KRT28Q7Z3Y7 464 aa14.95□□□□□ -0.02
SCN9A-205ENST00000454569 NHSL1Q5SYE7 1610 aa14.95□□□□□ -0.02
SCN9A-205ENST00000454569 ALS2Q96Q42 1657 aa14.95□□□□□ -0.02
SCN9A-205ENST00000454569 POLA2Q14181 598 aa14.94□□□□□ -0.02
SCN9A-205ENST00000454569 PXDNQ92626 1479 aa14.94□□□□□ -0.02
SCN9A-205ENST00000454569 PAK3O75914 559 aaPredicted RBP14.94□□□□□ -0.02
SCN9A-205ENST00000454569 PPP2R1AP30153 589 aa14.94□□□□□ -0.02
SCN9A-205ENST00000454569 RALBP1Q15311 655 aa14.94□□□□□ -0.02
SCN9A-205ENST00000454569 MORC1Q86VD1 984 aa14.94□□□□□ -0.02
SCN9A-205ENST00000454569 CERKQ8TCT0 537 aa14.93□□□□□ -0.02
SCN9A-205ENST00000454569 USP54Q70EL1 1684 aa14.92□□□□□ -0.02
SCN9A-205ENST00000454569 OVOS2A0A0J9YW53 1432 aa14.92□□□□□ -0.02
SCN9A-205ENST00000454569 OVOS2Q6IE36 1432 aa14.92□□□□□ -0.02
SCN9A-205ENST00000454569 CAPN15O75808 1086 aa14.92□□□□□ -0.02
SCN9A-205ENST00000454569 C1QBPQ07021 282 aaKnown RBP14.92□□□□□ -0.02
SCN9A-205ENST00000454569 PROM2Q8N271 834 aa14.92□□□□□ -0.02
SCN9A-205ENST00000454569 MYBBP1AQ9BQG0 1328 aaKnown RBP14.92□□□□□ -0.02
SCN9A-205ENST00000454569 NSD2O96028 1365 aa14.92□□□□□ -0.02
SCN9A-205ENST00000454569 TTC21AQ8NDW8 1320 aa14.91□□□□□ -0.02
SCN9A-205ENST00000454569 ABTB2Q8N961 1025 aa14.9□□□□□ -0.02
SCN9A-205ENST00000454569 PLEKHG5O94827 1062 aa14.9□□□□□ -0.02
SCN9A-205ENST00000454569 CCER2I3L3R5 266 aa14.89□□□□□ -0.03
SCN9A-205ENST00000454569 NLRP6P59044 892 aa14.89□□□□□ -0.03
SCN9A-205ENST00000454569 PIP4K2BP78356 416 aa14.89□□□□□ -0.03
SCN9A-205ENST00000454569 NPHP3Q7Z494 1330 aa14.89□□□□□ -0.03
SCN9A-205ENST00000454569 USP31Q70CQ4 1352 aa14.89□□□□□ -0.03
SCN9A-205ENST00000454569 CRYBG1Q9Y4K1 1723 aa14.88□□□□□ -0.03
SCN9A-205ENST00000454569 UBAP1LF5GYI3 381 aa14.88□□□□□ -0.03
SCN9A-205ENST00000454569 SOX12O15370 315 aa14.88□□□□□ -0.03
SCN9A-205ENST00000454569 COG3Q96JB2 828 aa14.88□□□□□ -0.03
SCN9A-205ENST00000454569 SOS2Q07890 1332 aaPredicted RBP14.88□□□□□ -0.03
SCN9A-205ENST00000454569 MED1Q15648 1581 aaPredicted RBP14.88□□□□□ -0.03
SCN9A-205ENST00000454569 PEAK1Q9H792 1746 aa14.87□□□□□ -0.03
SCN9A-205ENST00000454569 LMOD2Q6P5Q4 547 aa14.87□□□□□ -0.03
SCN9A-205ENST00000454569 IQSEC2Q5JU85 1478 aa14.87□□□□□ -0.03
SCN9A-205ENST00000454569 PHLPP1O60346 1717 aa14.86□□□□□ -0.03
SCN9A-205ENST00000454569 TOM1O60784 492 aa14.86□□□□□ -0.03
SCN9A-205ENST00000454569 BRD4O60885 1362 aaPredicted RBP14.86□□□□□ -0.03
SCN9A-205ENST00000454569 LTN1O94822 1766 aa14.86□□□□□ -0.03
SCN9A-205ENST00000454569 MTHFSP49914 203 aa14.86□□□□□ -0.03
SCN9A-205ENST00000454569 SPATA31A3Q5VYP0 1347 aa14.86□□□□□ -0.03
SCN9A-205ENST00000454569 MRS2Q9HD23 443 aa14.86□□□□□ -0.03
SCN9A-205ENST00000454569 AHDC1Q5TGY3 1603 aaPredicted RBP14.86□□□□□ -0.03
SCN9A-205ENST00000454569 SBNO1A3KN83 1393 aa14.86□□□□□ -0.03
SCN9A-205ENST00000454569 RRS1Q15050 365 aaKnown RBP14.85□□□□□ -0.03
SCN9A-205ENST00000454569 NLRP13Q86W25 1043 aa14.85□□□□□ -0.03
SCN9A-205ENST00000454569 POLKQ9UBT6 870 aa14.85□□□□□ -0.03
SCN9A-205ENST00000454569 EMILIN1Q9Y6C2 1016 aa14.85□□□□□ -0.03
SCN9A-205ENST00000454569 POTEDQ86YR6 584 aa14.85□□□□□ -0.03
SCN9A-205ENST00000454569 CABLES1Q8TDN4 633 aa14.85□□□□□ -0.03
SCN9A-205ENST00000454569 SHPRHQ149N8 1683 aa14.84□□□□□ -0.03
SCN9A-205ENST00000454569 PHRF1Q9P1Y6 1649 aaKnown RBP14.84□□□□□ -0.03
SCN9A-205ENST00000454569 TNS3Q68CZ2 1445 aa14.84□□□□□ -0.03
SCN9A-205ENST00000454569 RGPD5Q99666 1765 aa14.84□□□□□ -0.03
SCN9A-205ENST00000454569 COL16A1Q07092 1604 aaPredicted RBP14.83□□□□□ -0.04
SCN9A-205ENST00000454569 FBXO3Q9UK99 471 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms