RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 LTV1Q96GA3 475 aaPredicted RBP15.89■□□□□ 0.13
USP40-208ENST00000450966 BICRAQ9NZM4 1560 aa15.89■□□□□ 0.13
USP40-208ENST00000450966 TRIM6-TRIM34B2RNG4 842 aa15.88■□□□□ 0.13
USP40-208ENST00000450966 KRT222Q8N1A0 295 aa15.88■□□□□ 0.13
USP40-208ENST00000450966 LRRC9Q6ZRR7 1453 aa15.88■□□□□ 0.13
USP40-208ENST00000450966 XPCQ01831 940 aaPredicted RBP15.88■□□□□ 0.13
USP40-208ENST00000450966 MINK1Q8N4C8 1332 aaPredicted RBP15.88■□□□□ 0.13
USP40-208ENST00000450966 TRIM34Q9BYJ4 488 aa15.88■□□□□ 0.13
USP40-208ENST00000450966 NAT10Q9H0A0 1025 aaKnown RBP15.88■□□□□ 0.13
USP40-208ENST00000450966 RBM25P49756 843 aaKnown RBP15.88■□□□□ 0.13
USP40-208ENST00000450966 GOLGA6L10A6NI86 522 aa15.87■□□□□ 0.13
USP40-208ENST00000450966 MNAT1P51948 309 aa15.87■□□□□ 0.13
USP40-208ENST00000450966 SLC4A10Q6U841 1118 aa15.87■□□□□ 0.13
USP40-208ENST00000450966 MYBBP1AQ9BQG0 1328 aaKnown RBP15.87■□□□□ 0.13
USP40-208ENST00000450966 SCAPERQ9BY12 1400 aa15.87■□□□□ 0.13
USP40-208ENST00000450966 SHTN1A0MZ66 631 aa15.87■□□□□ 0.13
USP40-208ENST00000450966 SF3B2Q13435 895 aaKnown RBP15.87■□□□□ 0.13
USP40-208ENST00000450966 SARNPP82979 210 aaKnown RBP15.86■□□□□ 0.13
USP40-208ENST00000450966 RAPGEF4Q8WZA2 1011 aa15.86■□□□□ 0.13
USP40-208ENST00000450966 NUTM2FA1L443 756 aa15.86■□□□□ 0.13
USP40-208ENST00000450966 LRRFIP1Q32MZ4 808 aaKnown RBP15.86■□□□□ 0.13
USP40-208ENST00000450966 CENPHQ9H3R5 247 aa15.86■□□□□ 0.13
USP40-208ENST00000450966 NF2P35240 595 aa15.86■□□□□ 0.13
USP40-208ENST00000450966 FOXD4L6Q3SYB3 417 aaPredicted RBP15.86■□□□□ 0.13
USP40-208ENST00000450966 FOXD4L3Q6VB84 417 aaPredicted RBP15.86■□□□□ 0.13
USP40-208ENST00000450966 NEXNQ0ZGT2 675 aa15.86■□□□□ 0.13
USP40-208ENST00000450966 RASSF8Q8NHQ8 419 aa15.85■□□□□ 0.13
USP40-208ENST00000450966 RASSF4Q9H2L5 321 aa15.85■□□□□ 0.13
USP40-208ENST00000450966 H3BQV1 296 aa15.85■□□□□ 0.13
USP40-208ENST00000450966 IFFO2Q5TF58 517 aa15.85■□□□□ 0.13
USP40-208ENST00000450966 ZNF622Q969S3 477 aaKnown RBP eCLIP15.85■□□□□ 0.13
USP40-208ENST00000450966 PHF23Q9BUL5 403 aaPredicted RBP15.85■□□□□ 0.13
USP40-208ENST00000450966 SPDYE4A6NLX3 237 aa15.85■□□□□ 0.13
USP40-208ENST00000450966 BMS1Q14692 1282 aaKnown RBP15.85■□□□□ 0.13
USP40-208ENST00000450966 UBXN4Q92575 508 aa15.85■□□□□ 0.13
USP40-208ENST00000450966 IVLP07476 585 aa15.84■□□□□ 0.13
USP40-208ENST00000450966 PRPF40AO75400 957 aaKnown RBP15.84■□□□□ 0.13
USP40-208ENST00000450966 FILIP1Q7Z7B0 1213 aa15.84■□□□□ 0.13
USP40-208ENST00000450966 BICD2Q8TD16 824 aa15.84■□□□□ 0.13
USP40-208ENST00000450966 VGLL3A8MV65 326 aa15.84■□□□□ 0.13
USP40-208ENST00000450966 IQGAP2Q13576 1575 aa15.84■□□□□ 0.13
USP40-208ENST00000450966 KIAA1328Q86T90 577 aa15.84■□□□□ 0.13
USP40-208ENST00000450966 DDX58O95786 925 aaKnown RBP15.83■□□□□ 0.12
USP40-208ENST00000450966 GBP3Q9H0R5 595 aa15.83■□□□□ 0.12
USP40-208ENST00000450966 CD109Q6YHK3 1445 aa15.83■□□□□ 0.12
USP40-208ENST00000450966 CWC22Q9HCG8 908 aaKnown RBP15.82■□□□□ 0.12
USP40-208ENST00000450966 TOMM22Q9NS69 142 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 OFD1O75665 1012 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 AFAP1Q8N556 730 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 ANKRD20A12PQ8NF67 263 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 SLC26A8Q96RN1 970 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 TERF1P54274 439 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 MICALCLQ6ZW33 695 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 ZNF526Q8TF50 670 aaPredicted RBP15.82■□□□□ 0.12
USP40-208ENST00000450966 FEZ1Q99689 392 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 TTC31Q49AM3 519 aaPredicted RBP15.82■□□□□ 0.12
USP40-208ENST00000450966 CEP89Q96ST8 783 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 MYO6Q9UM54 1294 aa15.82■□□□□ 0.12
USP40-208ENST00000450966 SKIDA1Q1XH10 827 aa15.81■□□□□ 0.12
USP40-208ENST00000450966 BANK1Q8NDB2 785 aa15.81■□□□□ 0.12
USP40-208ENST00000450966 CLUAP1Q96AJ1 413 aa15.81■□□□□ 0.12
USP40-208ENST00000450966 GRIN2AQ12879 1464 aa15.81■□□□□ 0.12
USP40-208ENST00000450966 SETSIPP0DME0 302 aa15.81■□□□□ 0.12
USP40-208ENST00000450966 C9orf84Q5VXU9 1444 aa15.81■□□□□ 0.12
USP40-208ENST00000450966 SMG6Q86US8 1419 aaKnown RBP15.81■□□□□ 0.12
USP40-208ENST00000450966 TICAM2Q86XR7 235 aa15.81■□□□□ 0.12
USP40-208ENST00000450966 SPC24Q8NBT2 197 aa15.81■□□□□ 0.12
USP40-208ENST00000450966 CAGE1Q8TC20 777 aa15.8■□□□□ 0.12
USP40-208ENST00000450966 PLB1Q6P1J6 1458 aa15.8■□□□□ 0.12
USP40-208ENST00000450966 MARCH6O60337 910 aa15.8■□□□□ 0.12
USP40-208ENST00000450966 TEX14Q8IWB6 1497 aa15.8■□□□□ 0.12
USP40-208ENST00000450966 CPSF2Q9P2I0 782 aaKnown RBP15.8■□□□□ 0.12
USP40-208ENST00000450966 AKNAQ7Z591 1439 aa15.8■□□□□ 0.12
USP40-208ENST00000450966 TMCO5BA8MYB1 307 aa15.8■□□□□ 0.12
USP40-208ENST00000450966 DIAPH1O60610 1272 aaKnown RBP15.8■□□□□ 0.12
USP40-208ENST00000450966 RABEP1Q15276 862 aa15.8■□□□□ 0.12
USP40-208ENST00000450966 CCDC102AQ96A19 550 aa15.79■□□□□ 0.12
USP40-208ENST00000450966 PRXQ9BXM0 1461 aa15.79■□□□□ 0.12
USP40-208ENST00000450966 CCDC192P0DO97 292 aa15.79■□□□□ 0.12
USP40-208ENST00000450966 PEG3Q9GZU2 1588 aa15.79■□□□□ 0.12
USP40-208ENST00000450966 CREBRFQ8IUR6 639 aa15.79■□□□□ 0.12
USP40-208ENST00000450966 HOOK1Q9UJC3 728 aaKnown RBP15.79■□□□□ 0.12
USP40-208ENST00000450966 ST20-MTHFSA0A0A6YYL1 179 aa15.78■□□□□ 0.12
USP40-208ENST00000450966 CCDC73Q6ZRK6 1079 aa15.78■□□□□ 0.12
USP40-208ENST00000450966 AMOTL1Q8IY63 956 aa15.78■□□□□ 0.12
USP40-208ENST00000450966 USP47Q96K76 1375 aa15.78■□□□□ 0.12
USP40-208ENST00000450966 LIG1P18858 919 aa15.78■□□□□ 0.12
USP40-208ENST00000450966 ZNF692Q9BU19 519 aaPredicted RBP15.78■□□□□ 0.12
USP40-208ENST00000450966 ANKRD45Q5TZF3 282 aa15.78■□□□□ 0.12
USP40-208ENST00000450966 CCDC146Q8IYE0 955 aa15.78■□□□□ 0.12
USP40-208ENST00000450966 MYCBPQ99417 103 aaPredicted RBP15.78■□□□□ 0.12
USP40-208ENST00000450966 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.78■□□□□ 0.12
USP40-208ENST00000450966 LRRCC1Q9C099 1032 aa15.77■□□□□ 0.12
USP40-208ENST00000450966 OGFRQ9NZT2 677 aa15.77■□□□□ 0.12
USP40-208ENST00000450966 A0A1B0GUL7 405 aa15.77■□□□□ 0.11
USP40-208ENST00000450966 HS1BP3Q53T59 392 aa15.77■□□□□ 0.11
USP40-208ENST00000450966 PANK3Q9H999 370 aa15.76■□□□□ 0.11
USP40-208ENST00000450966 ZKSCAN2Q63HK3 967 aa15.76■□□□□ 0.11
USP40-208ENST00000450966 INTS3Q68E01 1043 aaKnown RBP15.76■□□□□ 0.11
USP40-208ENST00000450966 SMC3Q9UQE7 1217 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms