RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	RPRD2	Q5VT52	1461 aa	Known RBP	10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	STARD3NL	O95772	234 aa		10.87	□□□□□ -0.67
HCG18-238	ENST00000449544	KCNJ4	P48050	445 aa		10.87	□□□□□ -0.67
HCG18-238	ENST00000449544	FTSJ3	Q8IY81	847 aa	Known RBP	10.87	□□□□□ -0.67
HCG18-238	ENST00000449544	ISY1	Q9ULR0	285 aa	Known RBP	10.87	□□□□□ -0.67
HCG18-238	ENST00000449544	FAM182B	Q5T319	152 aa		10.87	□□□□□ -0.67
HCG18-238	ENST00000449544	NECTIN2	Q92692	538 aa		10.87	□□□□□ -0.67
HCG18-238	ENST00000449544	PZP	P20742	1482 aa		10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	TCERG1	O14776	1098 aa	Known RBP	10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	GORAB	Q5T7V8	394 aa		10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	KIF6	Q6ZMV9	814 aa		10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	RIMS1	Q86UR5	1692 aa	Known RBP	10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	ERVK-7	P63135	1459 aa		10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	SHANK2	Q9UPX8	1470 aa		10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	ELL2	O00472	640 aa	Predicted RBP	10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	ABCA9	Q8IUA7	1624 aa		10.86	□□□□□ -0.67
HCG18-238	ENST00000449544	TTC21A	Q8NDW8	1320 aa		10.85	□□□□□ -0.67
HCG18-238	ENST00000449544	ARHGEF12	Q9NZN5	1544 aa		10.85	□□□□□ -0.67
HCG18-238	ENST00000449544	AIMP1	Q12904	312 aa	Known RBP	10.85	□□□□□ -0.67
HCG18-238	ENST00000449544	TTC21B	Q7Z4L5	1316 aa		10.85	□□□□□ -0.67
HCG18-238	ENST00000449544	MBD5	Q9P267	1494 aa		10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	RALBP1	Q15311	655 aa		10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	FRAT1	Q92837	279 aa	Predicted RBP	10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	PIK3R4	Q99570	1358 aa		10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	DDX58	O95786	925 aa	Known RBP	10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	HSP90B1	P14625	803 aa	Known RBP	10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	SLC4A10	Q6U841	1118 aa		10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	TSPYL4	Q9UJ04	414 aa		10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	HDAC5	Q9UQL6	1122 aa		10.84	□□□□□ -0.67
HCG18-238	ENST00000449544	IFNL2	Q8IZJ0	200 aa		10.83	□□□□□ -0.68
HCG18-238	ENST00000449544	PSD	A5PKW4	1024 aa	Predicted RBP	10.83	□□□□□ -0.68
HCG18-238	ENST00000449544	CAMSAP1	Q5T5Y3	1602 aa		10.83	□□□□□ -0.68
HCG18-238	ENST00000449544	CCDC146	Q8IYE0	955 aa		10.83	□□□□□ -0.68
HCG18-238	ENST00000449544	CCNL1	Q9UK58	526 aa	Predicted RBP	10.83	□□□□□ -0.68
HCG18-238	ENST00000449544	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.82	□□□□□ -0.68
HCG18-238	ENST00000449544	AMOT	Q4VCS5	1084 aa		10.82	□□□□□ -0.68
HCG18-238	ENST00000449544	GJD4	Q96KN9	370 aa	Predicted RBP	10.82	□□□□□ -0.68
HCG18-238	ENST00000449544	ZNF652	Q9Y2D9	606 aa		10.82	□□□□□ -0.68
HCG18-238	ENST00000449544	TRPM2	O94759	1503 aa		10.81	□□□□□ -0.68
HCG18-238	ENST00000449544	ZNF622	Q969S3	477 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
HCG18-238	ENST00000449544	ARHGEF40	Q8TER5	1519 aa		10.81	□□□□□ -0.68
HCG18-238	ENST00000449544	ATP6V1A	P38606	617 aa		10.81	□□□□□ -0.68
HCG18-238	ENST00000449544	VPS37D	Q86XT2	251 aa		10.81	□□□□□ -0.68
HCG18-238	ENST00000449544	RIC3	Q7Z5B4	369 aa		10.8	□□□□□ -0.68
HCG18-238	ENST00000449544	PTPRT	O14522	1441 aa		10.8	□□□□□ -0.68
HCG18-238	ENST00000449544	PPIP5K1	Q6PFW1	1433 aa		10.8	□□□□□ -0.68
HCG18-238	ENST00000449544	MET	P08581	1390 aa		10.8	□□□□□ -0.68
HCG18-238	ENST00000449544	DAXX	Q9UER7	740 aa	Predicted RBP	10.8	□□□□□ -0.68
HCG18-238	ENST00000449544	RTCB	Q9Y3I0	505 aa	Known RBP	10.8	□□□□□ -0.68
HCG18-238	ENST00000449544	PARP3	Q9Y6F1	533 aa		10.8	□□□□□ -0.68
HCG18-238	ENST00000449544	CLEC11A	Q9Y240	323 aa		10.79	□□□□□ -0.68
HCG18-238	ENST00000449544	RIPK4	P57078	832 aa		10.79	□□□□□ -0.68
HCG18-238	ENST00000449544	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.79	□□□□□ -0.68
HCG18-238	ENST00000449544	CFAP44	Q96MT7	982 aa		10.78	□□□□□ -0.68
HCG18-238	ENST00000449544	PRKAR2B	P31323	418 aa		10.78	□□□□□ -0.68
HCG18-238	ENST00000449544	GRM1	Q13255	1194 aa		10.78	□□□□□ -0.68
HCG18-238	ENST00000449544	MADD	Q8WXG6	1647 aa		10.78	□□□□□ -0.68
HCG18-238	ENST00000449544	LARP1	Q6PKG0	1096 aa	Known RBP	10.78	□□□□□ -0.68
HCG18-238	ENST00000449544	EMILIN1	Q9Y6C2	1016 aa		10.78	□□□□□ -0.68
HCG18-238	ENST00000449544	ABCC11	Q96J66	1382 aa		10.77	□□□□□ -0.68
HCG18-238	ENST00000449544	SPON1	Q9HCB6	807 aa		10.77	□□□□□ -0.69
HCG18-238	ENST00000449544	PRIM1	P49642	420 aa	Known RBP	10.76	□□□□□ -0.69
HCG18-238	ENST00000449544	EN1	Q05925	392 aa	Predicted RBP	10.76	□□□□□ -0.69
HCG18-238	ENST00000449544	R3HDM1	Q15032	1099 aa	Known RBP	10.76	□□□□□ -0.69
HCG18-238	ENST00000449544	GNPAT	O15228	680 aa		10.76	□□□□□ -0.69
HCG18-238	ENST00000449544	CHMP4B	Q9H444	224 aa	Known RBP	10.76	□□□□□ -0.69
HCG18-238	ENST00000449544	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.76	□□□□□ -0.69
HCG18-238	ENST00000449544	AGL	P35573	1532 aa		10.75	□□□□□ -0.69
HCG18-238	ENST00000449544	PREX2	Q70Z35	1606 aa		10.75	□□□□□ -0.69
HCG18-238	ENST00000449544	BTBD11	A6QL63	1104 aa		10.75	□□□□□ -0.69
HCG18-238	ENST00000449544	PNISR	Q8TF01	805 aa	Known RBP	10.75	□□□□□ -0.69
HCG18-238	ENST00000449544	CWC22	Q9HCG8	908 aa	Known RBP	10.75	□□□□□ -0.69
HCG18-238	ENST00000449544	TRAPPC3L	Q5T215	181 aa		10.75	□□□□□ -0.69
HCG18-238	ENST00000449544	SIRT1	Q96EB6	747 aa		10.75	□□□□□ -0.69
HCG18-238	ENST00000449544	KIAA0232	Q92628	1395 aa		10.74	□□□□□ -0.69
HCG18-238	ENST00000449544	RTL5	Q5HYW3	569 aa	Predicted RBP	10.74	□□□□□ -0.69
HCG18-238	ENST00000449544	MYL6B	P14649	208 aa		10.74	□□□□□ -0.69
HCG18-238	ENST00000449544	IPO8	O15397	1037 aa	Known RBP	10.74	□□□□□ -0.69
HCG18-238	ENST00000449544	HSP90AB2P	Q58FF8	381 aa		10.74	□□□□□ -0.69
HCG18-238	ENST00000449544	FLAD1	Q8NFF5	587 aa		10.74	□□□□□ -0.69
HCG18-238	ENST00000449544	SPATA31A3	Q5VYP0	1347 aa		10.74	□□□□□ -0.69
HCG18-238	ENST00000449544	ABCC3	O15438	1527 aa		10.73	□□□□□ -0.69
HCG18-238	ENST00000449544	RPGR	Q92834	1020 aa	Known RBP	10.73	□□□□□ -0.69
HCG18-238	ENST00000449544	TEX13A	Q9BXU3	409 aa	Predicted RBP	10.73	□□□□□ -0.69
HCG18-238	ENST00000449544	TRIM34	Q9BYJ4	488 aa		10.73	□□□□□ -0.69
HCG18-238	ENST00000449544	TCOF1	Q13428	1488 aa	Known RBP	10.73	□□□□□ -0.69
HCG18-238	ENST00000449544	MS4A1	P11836	297 aa		10.73	□□□□□ -0.69
HCG18-238	ENST00000449544	ADGRL3	Q9HAR2	1447 aa		10.73	□□□□□ -0.69
HCG18-238	ENST00000449544		A0A087WZG4	1122 aa		10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	CCDC125	Q86Z20	511 aa		10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	ZNF526	Q8TF50	670 aa	Predicted RBP	10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	NOL10	Q9BSC4	688 aa	Known RBP	10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	ARHGEF5	Q12774	1597 aa		10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	ARHGAP31	Q2M1Z3	1444 aa		10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	ROBO2	Q9HCK4	1378 aa		10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	FKBP5	Q13451	457 aa	Predicted RBP	10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	MSL1	Q68DK7	614 aa		10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	BCS1L	Q9Y276	419 aa		10.72	□□□□□ -0.69
HCG18-238	ENST00000449544	FBLN1	P23142	703 aa		10.72	□□□□□ -0.69

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