RNA–Protein interactions for RNA: ENST00000449190.5

RFX3-207, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-207ENST00000449190 NGDNQ8NEJ9 315 aaKnown RBP12.88□□□□□ -0.35
RFX3-207ENST00000449190 NGLY1Q96IV0 654 aa12.88□□□□□ -0.35
RFX3-207ENST00000449190 SBNO1A3KN83 1393 aa12.88□□□□□ -0.35
RFX3-207ENST00000449190 PLEKHG3A1L390 1219 aa12.87□□□□□ -0.35
RFX3-207ENST00000449190 C8orf37Q96NL8 207 aa12.87□□□□□ -0.35
RFX3-207ENST00000449190 AFF2P51816 1311 aa12.87□□□□□ -0.35
RFX3-207ENST00000449190 TULP4Q9NRJ4 1543 aa12.86□□□□□ -0.35
RFX3-207ENST00000449190 ST20-MTHFSA0A0A6YYL1 179 aa12.85□□□□□ -0.35
RFX3-207ENST00000449190 SRPK2P78362 688 aaKnown RBP12.85□□□□□ -0.35
RFX3-207ENST00000449190 FNBP4Q8N3X1 1017 aaPredicted RBP12.85□□□□□ -0.35
RFX3-207ENST00000449190 QTRT2Q9H974 415 aaKnown RBP12.85□□□□□ -0.35
RFX3-207ENST00000449190 KIF1AQ12756 1690 aa12.85□□□□□ -0.35
RFX3-207ENST00000449190 EVC2Q86UK5 1308 aa12.85□□□□□ -0.35
RFX3-207ENST00000449190 USP47Q96K76 1375 aa12.84□□□□□ -0.35
RFX3-207ENST00000449190 RXRBP28702 533 aa12.84□□□□□ -0.35
RFX3-207ENST00000449190 LMOD2Q6P5Q4 547 aa12.84□□□□□ -0.35
RFX3-207ENST00000449190 REM2Q8IYK8 340 aaPredicted RBP12.84□□□□□ -0.35
RFX3-207ENST00000449190 CABP2Q9NPB3 220 aa12.84□□□□□ -0.35
RFX3-207ENST00000449190 ARHGEF28Q8N1W1 1705 aaKnown RBP12.84□□□□□ -0.35
RFX3-207ENST00000449190 ARHGEF10O15013 1369 aa12.83□□□□□ -0.36
RFX3-207ENST00000449190 ACEP12821 1306 aa12.83□□□□□ -0.36
RFX3-207ENST00000449190 RGPD8O14715 1765 aaPredicted RBP12.82□□□□□ -0.36
RFX3-207ENST00000449190 TNS3Q68CZ2 1445 aa12.82□□□□□ -0.36
RFX3-207ENST00000449190 USP32Q8NFA0 1604 aa12.82□□□□□ -0.36
RFX3-207ENST00000449190 HSPA5P11021 654 aaKnown RBP12.82□□□□□ -0.36
RFX3-207ENST00000449190 HAP1P54257 671 aaPredicted RBP12.82□□□□□ -0.36
RFX3-207ENST00000449190 USP21Q9UK80 565 aa12.82□□□□□ -0.36
RFX3-207ENST00000449190 PAK3O75914 559 aaPredicted RBP12.81□□□□□ -0.36
RFX3-207ENST00000449190 RBM6P78332 1123 aaKnown RBP12.81□□□□□ -0.36
RFX3-207ENST00000449190 CABLES1Q8TDN4 633 aa12.81□□□□□ -0.36
RFX3-207ENST00000449190 CABP1Q9NZU7 370 aa12.81□□□□□ -0.36
RFX3-207ENST00000449190 TRPC5Q9UL62 973 aaPredicted RBP12.81□□□□□ -0.36
RFX3-207ENST00000449190 POLR3AO14802 1390 aaPredicted RBP12.81□□□□□ -0.36
RFX3-207ENST00000449190 COL22A1Q8NFW1 1626 aaPredicted RBP12.8□□□□□ -0.36
RFX3-207ENST00000449190 ATP7BP35670 1465 aa12.8□□□□□ -0.36
RFX3-207ENST00000449190 TMF1P82094 1093 aa12.8□□□□□ -0.36
RFX3-207ENST00000449190 CDCA8Q53HL2 280 aa12.8□□□□□ -0.36
RFX3-207ENST00000449190 HAX1O00165 279 aa12.79□□□□□ -0.36
RFX3-207ENST00000449190 ZNF692Q9BU19 519 aaPredicted RBP12.79□□□□□ -0.36
RFX3-207ENST00000449190 PUS7Q96PZ0 661 aaKnown RBP12.78□□□□□ -0.36
RFX3-207ENST00000449190 BRD4O60885 1362 aaPredicted RBP12.78□□□□□ -0.36
RFX3-207ENST00000449190 FAM83GA6ND36 823 aa12.77□□□□□ -0.37
RFX3-207ENST00000449190 PLEKHG5O94827 1062 aa12.77□□□□□ -0.37
RFX3-207ENST00000449190 UNC5CLQ8IV45 518 aa12.77□□□□□ -0.37
RFX3-207ENST00000449190 SBNO2Q9Y2G9 1366 aa12.77□□□□□ -0.37
RFX3-207ENST00000449190 PPIP5K1Q6PFW1 1433 aa12.77□□□□□ -0.37
RFX3-207ENST00000449190 ABTB2Q8N961 1025 aa12.76□□□□□ -0.37
RFX3-207ENST00000449190 TESK2Q96S53 571 aa12.76□□□□□ -0.37
RFX3-207ENST00000449190 ZBTB12Q9Y330 459 aaPredicted RBP12.76□□□□□ -0.37
RFX3-207ENST00000449190 ATAD2Q6PL18 1390 aa12.75□□□□□ -0.37
RFX3-207ENST00000449190 BCL9LQ86UU0 1499 aa12.75□□□□□ -0.37
RFX3-207ENST00000449190 NLRP13Q86W25 1043 aa12.75□□□□□ -0.37
RFX3-207ENST00000449190 POLR3GLQ9BT43 218 aa12.75□□□□□ -0.37
RFX3-207ENST00000449190 CDK12Q9NYV4 1490 aaPredicted RBP12.74□□□□□ -0.37
RFX3-207ENST00000449190 GJD4Q96KN9 370 aaPredicted RBP12.74□□□□□ -0.37
RFX3-207ENST00000449190 ATRNO75882 1429 aa12.73□□□□□ -0.37
RFX3-207ENST00000449190 FXR2P51116 673 aaKnown RBP eCLIP12.73□□□□□ -0.37
RFX3-207ENST00000449190 NUTM2GQ5VZR2 741 aa12.73□□□□□ -0.37
RFX3-207ENST00000449190 TMC1Q8TDI8 760 aa12.73□□□□□ -0.37
RFX3-207ENST00000449190 SLIT2O94813 1529 aa12.72□□□□□ -0.37
RFX3-207ENST00000449190 ITSN1Q15811 1721 aa12.72□□□□□ -0.37
RFX3-207ENST00000449190 TRPM3Q9HCF6 1732 aaPredicted RBP12.72□□□□□ -0.37
RFX3-207ENST00000449190 VPS72Q15906 364 aa12.72□□□□□ -0.37
RFX3-207ENST00000449190 QRICH2Q9H0J4 1663 aa12.72□□□□□ -0.37
RFX3-207ENST00000449190 PITPNM1O00562 1244 aa12.71□□□□□ -0.37
RFX3-207ENST00000449190 ATF5Q9Y2D1 282 aaPredicted RBP12.71□□□□□ -0.37
RFX3-207ENST00000449190 GCP02774 474 aa12.7□□□□□ -0.38
RFX3-207ENST00000449190 NLRP6P59044 892 aa12.7□□□□□ -0.38
RFX3-207ENST00000449190 ZC3H6P61129 1189 aaKnown RBP12.7□□□□□ -0.38
RFX3-207ENST00000449190 SLC12A5Q9H2X9 1139 aa12.7□□□□□ -0.38
RFX3-207ENST00000449190 PRDM11Q9NQV5 511 aa12.7□□□□□ -0.38
RFX3-207ENST00000449190 BTG4Q9NY30 223 aa12.7□□□□□ -0.38
RFX3-207ENST00000449190 TOPAZ1Q8N9V7 1692 aa12.7□□□□□ -0.38
RFX3-207ENST00000449190 ALS2Q96Q42 1657 aa12.7□□□□□ -0.38
RFX3-207ENST00000449190 USP6P35125 1406 aa12.7□□□□□ -0.38
RFX3-207ENST00000449190 TTC21BQ7Z4L5 1316 aa12.69□□□□□ -0.38
RFX3-207ENST00000449190 ONECUT3O60422 494 aaPredicted RBP12.69□□□□□ -0.38
RFX3-207ENST00000449190 HDGFL2Q7Z4V5 671 aaPredicted RBP12.69□□□□□ -0.38
RFX3-207ENST00000449190 CPSF1Q10570 1443 aaKnown RBP12.69□□□□□ -0.38
RFX3-207ENST00000449190 SSH2Q76I76 1423 aa12.69□□□□□ -0.38
RFX3-207ENST00000449190 USP19O94966 1318 aa12.68□□□□□ -0.38
RFX3-207ENST00000449190 TTC21AQ8NDW8 1320 aa12.68□□□□□ -0.38
RFX3-207ENST00000449190 TERF2IPQ9NYB0 399 aa12.68□□□□□ -0.38
RFX3-207ENST00000449190 UPF1Q92900 1129 aaKnown RBP eCLIP12.67□□□□□ -0.38
RFX3-207ENST00000449190 CCDC9Q9Y3X0 531 aaKnown RBP12.67□□□□□ -0.38
RFX3-207ENST00000449190 MARF1Q9Y4F3 1742 aaKnown RBP12.67□□□□□ -0.38
RFX3-207ENST00000449190 KTN1Q86UP2 1357 aaKnown RBP12.67□□□□□ -0.38
RFX3-207ENST00000449190 KIAA0232Q92628 1395 aa12.67□□□□□ -0.38
RFX3-207ENST00000449190 CHRNA2Q15822 529 aa12.66□□□□□ -0.38
RFX3-207ENST00000449190 NINLQ9Y2I6 1382 aa12.66□□□□□ -0.38
RFX3-207ENST00000449190 RGS12O14924 1447 aa12.65□□□□□ -0.38
RFX3-207ENST00000449190 C11orf95C9JLR9 678 aaPredicted RBP12.65□□□□□ -0.38
RFX3-207ENST00000449190 EVA1CP58658 441 aa12.65□□□□□ -0.38
RFX3-207ENST00000449190 KCNH5Q8NCM2 988 aa12.65□□□□□ -0.38
RFX3-207ENST00000449190 CPDO75976 1380 aa12.65□□□□□ -0.38
RFX3-207ENST00000449190 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.64□□□□□ -0.398e-7■■■□□ 18.5
RFX3-207ENST00000449190 SEPT12Q8IYM1 358 aa12.64□□□□□ -0.39
RFX3-207ENST00000449190 KIF7Q2M1P5 1343 aa12.63□□□□□ -0.39
RFX3-207ENST00000449190 SPATA31A5Q5VU36 1347 aa12.63□□□□□ -0.39
RFX3-207ENST00000449190 SPATA31A7Q8IWB4 1347 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms