RNA–Protein interactions for RNA: ENST00000441350.2

VPS13B-204, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 1 (best) BASIC

Gene VPS13B, Length 1,626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-204ENST00000441350 FOXO3O43524 673 aa28.72■■■□□ 2.19
VPS13B-204ENST00000441350 BRINP3Q76B58 766 aa28.72■■■□□ 2.19
VPS13B-204ENST00000441350 IQSEC2Q5JU85 1478 aa28.7■■■□□ 2.19
VPS13B-204ENST00000441350 TTC21AQ8NDW8 1320 aa28.7■■■□□ 2.18
VPS13B-204ENST00000441350 ANKRD26Q9UPS8 1709 aa28.7■■■□□ 2.18
VPS13B-204ENST00000441350 PSME1Q06323 249 aa28.69■■■□□ 2.18
VPS13B-204ENST00000441350 NME9Q86XW9 330 aa28.67■■■□□ 2.18
VPS13B-204ENST00000441350 GGNBP2Q9H3C7 697 aa28.67■■■□□ 2.18
VPS13B-204ENST00000441350 TRPM3Q9HCF6 1732 aaPredicted RBP28.65■■■□□ 2.18
VPS13B-204ENST00000441350 NPHP3Q7Z494 1330 aa28.65■■■□□ 2.18
VPS13B-204ENST00000441350 KRT28Q7Z3Y7 464 aa28.64■■■□□ 2.18
VPS13B-204ENST00000441350 MORC1Q86VD1 984 aa28.64■■■□□ 2.18
VPS13B-204ENST00000441350 MYBBP1AQ9BQG0 1328 aaKnown RBP28.63■■■□□ 2.17
VPS13B-204ENST00000441350 PIK3C2AO00443 1686 aa28.63■■■□□ 2.17
VPS13B-204ENST00000441350 CCER2I3L3R5 266 aa28.62■■■□□ 2.17
VPS13B-204ENST00000441350 CERKQ8TCT0 537 aa28.62■■■□□ 2.17
VPS13B-204ENST00000441350 XPCQ01831 940 aaPredicted RBP28.61■■■□□ 2.17
VPS13B-204ENST00000441350 DDX17Q92841 729 aaKnown RBP28.61■■■□□ 2.17
VPS13B-204ENST00000441350 ZRANB1Q9UGI0 708 aa28.61■■■□□ 2.17
VPS13B-204ENST00000441350 PXDNQ92626 1479 aa28.61■■■□□ 2.17
VPS13B-204ENST00000441350 USP31Q70CQ4 1352 aa28.6■■■□□ 2.17
VPS13B-204ENST00000441350 TOM1O60784 492 aa28.59■■■□□ 2.17
VPS13B-204ENST00000441350 PAK3O75914 559 aaPredicted RBP28.59■■■□□ 2.17
VPS13B-204ENST00000441350 NHSL1Q5SYE7 1610 aa28.59■■■□□ 2.17
VPS13B-204ENST00000441350 OVOS2A0A0J9YW53 1432 aa28.59■■■□□ 2.17
VPS13B-204ENST00000441350 OVOS2Q6IE36 1432 aa28.59■■■□□ 2.17
VPS13B-204ENST00000441350 ROBO1Q9Y6N7 1651 aa28.58■■■□□ 2.17
VPS13B-204ENST00000441350 SBNO1A3KN83 1393 aa28.58■■■□□ 2.17
VPS13B-204ENST00000441350 USP54Q70EL1 1684 aa28.58■■■□□ 2.17
VPS13B-204ENST00000441350 PPP2R1AP30153 589 aa28.58■■■□□ 2.17
VPS13B-204ENST00000441350 COG3Q96JB2 828 aa28.58■■■□□ 2.17
VPS13B-204ENST00000441350 ABTB2Q8N961 1025 aa28.56■■■□□ 2.16
VPS13B-204ENST00000441350 SOS2Q07890 1332 aaPredicted RBP28.55■■■□□ 2.16
VPS13B-204ENST00000441350 SCAF1Q9H7N4 1312 aaKnown RBP28.55■■■□□ 2.16
VPS13B-204ENST00000441350 NLRP13Q86W25 1043 aa28.55■■■□□ 2.16
VPS13B-204ENST00000441350 MARF1Q9Y4F3 1742 aaKnown RBP28.55■■■□□ 2.16
VPS13B-204ENST00000441350 ALS2Q96Q42 1657 aa28.55■■■□□ 2.16
VPS13B-204ENST00000441350 TNNT2P45379 298 aaPredicted RBP28.53■■■□□ 2.16
VPS13B-204ENST00000441350 UBAP1LF5GYI3 381 aa28.52■■■□□ 2.16
VPS13B-204ENST00000441350 NLRP6P59044 892 aa28.52■■■□□ 2.16
VPS13B-204ENST00000441350 CCDC184Q52MB2 194 aa28.52■■■□□ 2.16
VPS13B-204ENST00000441350 AHDC1Q5TGY3 1603 aaPredicted RBP28.5■■■□□ 2.15
VPS13B-204ENST00000441350 TNS3Q68CZ2 1445 aa28.5■■■□□ 2.15
VPS13B-204ENST00000441350 SPATA31A3Q5VYP0 1347 aa28.49■■■□□ 2.15
VPS13B-204ENST00000441350 NUTM2GQ5VZR2 741 aa28.49■■■□□ 2.15
VPS13B-204ENST00000441350 AATKQ6ZMQ8 1374 aa28.48■■■□□ 2.15
VPS13B-204ENST00000441350 MRS2Q9HD23 443 aa28.46■■■□□ 2.15
VPS13B-204ENST00000441350 FBLN1P23142 703 aa28.44■■■□□ 2.14
VPS13B-204ENST00000441350 PIP4K2BP78356 416 aa28.44■■■□□ 2.14
VPS13B-204ENST00000441350 LMOD2Q6P5Q4 547 aa28.44■■■□□ 2.14
VPS13B-204ENST00000441350 ARHGEF10O15013 1369 aa28.44■■■□□ 2.14
VPS13B-204ENST00000441350 MAP2P11137 1827 aaKnown RBP28.44■■■□□ 2.14
VPS13B-204ENST00000441350 MTHFSP49914 203 aa28.43■■■□□ 2.14
VPS13B-204ENST00000441350 USP19O94966 1318 aa28.43■■■□□ 2.14
VPS13B-204ENST00000441350 SLIT3O75094 1523 aa28.42■■■□□ 2.14
VPS13B-204ENST00000441350 POLKQ9UBT6 870 aa28.42■■■□□ 2.14
VPS13B-204ENST00000441350 SMG6Q86US8 1419 aaKnown RBP28.41■■■□□ 2.14
VPS13B-204ENST00000441350 MED1Q15648 1581 aaPredicted RBP28.39■■■□□ 2.14
VPS13B-204ENST00000441350 NFAT5O94916 1531 aa28.38■■■□□ 2.13
VPS13B-204ENST00000441350 PHLPP1O60346 1717 aa28.38■■■□□ 2.13
VPS13B-204ENST00000441350 KCNH5Q8NCM2 988 aa28.37■■■□□ 2.13
VPS13B-204ENST00000441350 CRYBG1Q9Y4K1 1723 aa28.37■■■□□ 2.13
VPS13B-204ENST00000441350 COL16A1Q07092 1604 aaPredicted RBP28.37■■■□□ 2.13
VPS13B-204ENST00000441350 RRS1Q15050 365 aaKnown RBP28.36■■■□□ 2.13
VPS13B-204ENST00000441350 LRRC59Q96AG4 307 aaKnown RBP28.36■■■□□ 2.13
VPS13B-204ENST00000441350 EMILIN1Q9Y6C2 1016 aa28.36■■■□□ 2.13
VPS13B-204ENST00000441350 SOX12O15370 315 aa28.36■■■□□ 2.13
VPS13B-204ENST00000441350 PNPLA6Q8IY17 1366 aa28.35■■■□□ 2.13
VPS13B-204ENST00000441350 GCP02774 474 aa28.35■■■□□ 2.13
VPS13B-204ENST00000441350 PNISRQ8TF01 805 aaKnown RBP28.35■■■□□ 2.13
VPS13B-204ENST00000441350 INSRP06213 1382 aa28.35■■■□□ 2.13
VPS13B-204ENST00000441350 PHRF1Q9P1Y6 1649 aaKnown RBP28.34■■■□□ 2.13
VPS13B-204ENST00000441350 CDK12Q9NYV4 1490 aaPredicted RBP28.33■■■□□ 2.13
VPS13B-204ENST00000441350 MAP3K19Q56UN5 1328 aa28.33■■■□□ 2.13
VPS13B-204ENST00000441350 CFAP53Q96M91 514 aa28.32■■■□□ 2.12
VPS13B-204ENST00000441350 PEAK1Q9H792 1746 aa28.32■■■□□ 2.12
VPS13B-204ENST00000441350 COL3A1P02461 1466 aaPredicted RBP28.32■■■□□ 2.12
VPS13B-204ENST00000441350 PPM1GO15355 546 aaPredicted RBP28.3■■■□□ 2.12
VPS13B-204ENST00000441350 KIF24Q5T7B8 1368 aa28.29■■■□□ 2.12
VPS13B-204ENST00000441350 CABLES1Q8TDN4 633 aa28.29■■■□□ 2.12
VPS13B-204ENST00000441350 LTN1O94822 1766 aa28.29■■■□□ 2.12
VPS13B-204ENST00000441350 PLEKHG5O94827 1062 aa28.29■■■□□ 2.12
VPS13B-204ENST00000441350 COL22A1Q8NFW1 1626 aaPredicted RBP28.28■■■□□ 2.12
VPS13B-204ENST00000441350 ABCA3Q99758 1704 aa28.27■■■□□ 2.12
VPS13B-204ENST00000441350 ARHGEF25Q86VW2 580 aa28.27■■■□□ 2.12
VPS13B-204ENST00000441350 SHPRHQ149N8 1683 aa28.27■■■□□ 2.12
VPS13B-204ENST00000441350 FLT4P35916 1363 aa28.25■■■□□ 2.11
VPS13B-204ENST00000441350 FAM9BQ8IZU0 186 aa28.25■■■□□ 2.11
VPS13B-204ENST00000441350 RTL1A6NKG5 1358 aa28.24■■■□□ 2.11
VPS13B-204ENST00000441350 AMPHP49418 695 aa28.23■■■□□ 2.11
VPS13B-204ENST00000441350 DIAPH1O60610 1272 aaKnown RBP28.22■■■□□ 2.11
VPS13B-204ENST00000441350 HOXC9P31274 260 aa28.21■■■□□ 2.11
VPS13B-204ENST00000441350 HSP90AB2PQ58FF8 381 aa28.21■■■□□ 2.11
VPS13B-204ENST00000441350 CPDO75976 1380 aa28.21■■■□□ 2.11
VPS13B-204ENST00000441350 IP6K1Q92551 441 aa28.21■■■□□ 2.11
VPS13B-204ENST00000441350 ZC3H6P61129 1189 aaKnown RBP28.2■■■□□ 2.1
VPS13B-204ENST00000441350 WDR43Q15061 677 aaKnown RBP eCLIP28.19■■■□□ 2.1
VPS13B-204ENST00000441350 IL13P35225 146 aa28.18■■■□□ 2.1
VPS13B-204ENST00000441350 ADAMTS8Q9UP79 889 aa28.18■■■□□ 2.1
VPS13B-204ENST00000441350 NUDCQ9Y266 331 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms