RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 SBNO1A3KN83 1393 aa17.35■□□□□ 0.37
SCLT1-202ENST00000439369 PXDNQ92626 1479 aa17.35■□□□□ 0.37
SCLT1-202ENST00000439369 AHDC1Q5TGY3 1603 aaPredicted RBP17.35■□□□□ 0.37
SCLT1-202ENST00000439369 AMER1Q5JTC6 1135 aaPredicted RBP17.34■□□□□ 0.37
SCLT1-202ENST00000439369 DIEXFQ68CQ4 756 aaKnown RBP17.34■□□□□ 0.37
SCLT1-202ENST00000439369 TRPM3Q9HCF6 1732 aaPredicted RBP17.33■□□□□ 0.37
SCLT1-202ENST00000439369 KRT28Q7Z3Y7 464 aa17.33■□□□□ 0.36
SCLT1-202ENST00000439369 SOS2Q07890 1332 aaPredicted RBP17.32■□□□□ 0.36
SCLT1-202ENST00000439369 USP31Q70CQ4 1352 aa17.31■□□□□ 0.36
SCLT1-202ENST00000439369 USP54Q70EL1 1684 aa17.31■□□□□ 0.36
SCLT1-202ENST00000439369 KIF20BQ96Q89 1820 aa17.31■□□□□ 0.36
SCLT1-202ENST00000439369 FYB1O15117 783 aa17.3■□□□□ 0.36
SCLT1-202ENST00000439369 ANKRD26Q9UPS8 1709 aa17.3■□□□□ 0.36
SCLT1-202ENST00000439369 ALS2Q96Q42 1657 aa17.29■□□□□ 0.36
SCLT1-202ENST00000439369 TNS3Q68CZ2 1445 aa17.29■□□□□ 0.36
SCLT1-202ENST00000439369 ARHGEF10O15013 1369 aa17.28■□□□□ 0.36
SCLT1-202ENST00000439369 RALBP1Q15311 655 aa17.28■□□□□ 0.36
SCLT1-202ENST00000439369 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.28■□□□□ 0.361e-6■■□□□ 12.4
SCLT1-202ENST00000439369 PIK3C2AO00443 1686 aa17.28■□□□□ 0.36
SCLT1-202ENST00000439369 OVOS2A0A0J9YW53 1432 aa17.28■□□□□ 0.36
SCLT1-202ENST00000439369 OVOS2Q6IE36 1432 aa17.28■□□□□ 0.36
SCLT1-202ENST00000439369 PARD3Q8TEW0 1356 aa17.28■□□□□ 0.36
SCLT1-202ENST00000439369 SPATA31A3Q5VYP0 1347 aa17.27■□□□□ 0.36
SCLT1-202ENST00000439369 SCAF1Q9H7N4 1312 aaKnown RBP17.27■□□□□ 0.36
SCLT1-202ENST00000439369 ANP32CO43423 234 aa17.27■□□□□ 0.36
SCLT1-202ENST00000439369 PAK3O75914 559 aaPredicted RBP17.26■□□□□ 0.35
SCLT1-202ENST00000439369 PIP4K2BP78356 416 aa17.26■□□□□ 0.35
SCLT1-202ENST00000439369 MED1Q15648 1581 aaPredicted RBP17.25■□□□□ 0.35
SCLT1-202ENST00000439369 NME9Q86XW9 330 aa17.25■□□□□ 0.35
SCLT1-202ENST00000439369 ABTB2Q8N961 1025 aa17.25■□□□□ 0.35
SCLT1-202ENST00000439369 COG3Q96JB2 828 aa17.25■□□□□ 0.35
SCLT1-202ENST00000439369 PRKRIP1Q9H875 184 aaPredicted RBP17.25■□□□□ 0.35
SCLT1-202ENST00000439369 XPCQ01831 940 aaPredicted RBP17.24■□□□□ 0.35
SCLT1-202ENST00000439369 CC2D1BQ5T0F9 858 aaKnown RBP17.24■□□□□ 0.35
SCLT1-202ENST00000439369 MORC1Q86VD1 984 aa17.24■□□□□ 0.35
SCLT1-202ENST00000439369 NLRP13Q86W25 1043 aa17.24■□□□□ 0.35
SCLT1-202ENST00000439369 DDX17Q92841 729 aaKnown RBP17.24■□□□□ 0.35
SCLT1-202ENST00000439369 LRRC59Q96AG4 307 aaKnown RBP17.24■□□□□ 0.35
SCLT1-202ENST00000439369 COL16A1Q07092 1604 aaPredicted RBP17.24■□□□□ 0.35
SCLT1-202ENST00000439369 PHLPP1O60346 1717 aa17.24■□□□□ 0.35
SCLT1-202ENST00000439369 GGNBP2Q9H3C7 697 aa17.23■□□□□ 0.35
SCLT1-202ENST00000439369 USP19O94966 1318 aa17.22■□□□□ 0.35
SCLT1-202ENST00000439369 NLRP6P59044 892 aa17.22■□□□□ 0.35
SCLT1-202ENST00000439369 SLIT3O75094 1523 aa17.21■□□□□ 0.35
SCLT1-202ENST00000439369 AATKQ6ZMQ8 1374 aa17.21■□□□□ 0.35
SCLT1-202ENST00000439369 KCNH5Q8NCM2 988 aa17.2■□□□□ 0.34
SCLT1-202ENST00000439369 MARF1Q9Y4F3 1742 aaKnown RBP17.2■□□□□ 0.34
SCLT1-202ENST00000439369 MYBBP1AQ9BQG0 1328 aaKnown RBP17.2■□□□□ 0.34
SCLT1-202ENST00000439369 COL22A1Q8NFW1 1626 aaPredicted RBP17.19■□□□□ 0.34
SCLT1-202ENST00000439369 ZRANB1Q9UGI0 708 aa17.18■□□□□ 0.34
SCLT1-202ENST00000439369 LMOD2Q6P5Q4 547 aa17.17■□□□□ 0.34
SCLT1-202ENST00000439369 CRYBG1Q9Y4K1 1723 aa17.17■□□□□ 0.34
SCLT1-202ENST00000439369 KIF24Q5T7B8 1368 aa17.16■□□□□ 0.34
SCLT1-202ENST00000439369 PNPLA6Q8IY17 1366 aa17.16■□□□□ 0.34
SCLT1-202ENST00000439369 SMG6Q86US8 1419 aaKnown RBP17.16■□□□□ 0.34
SCLT1-202ENST00000439369 NFAT5O94916 1531 aa17.16■□□□□ 0.34
SCLT1-202ENST00000439369 PHRF1Q9P1Y6 1649 aaKnown RBP17.15■□□□□ 0.34
SCLT1-202ENST00000439369 PPP2R1AP30153 589 aa17.15■□□□□ 0.34
SCLT1-202ENST00000439369 SHPRHQ149N8 1683 aa17.15■□□□□ 0.34
SCLT1-202ENST00000439369 JCADQ9P266 1359 aa17.15■□□□□ 0.34
SCLT1-202ENST00000439369 GCP02774 474 aa17.14■□□□□ 0.33
SCLT1-202ENST00000439369 NUTM2GQ5VZR2 741 aa17.14■□□□□ 0.33
SCLT1-202ENST00000439369 ABCC6O95255 1503 aa17.13■□□□□ 0.33
SCLT1-202ENST00000439369 CCER2I3L3R5 266 aa17.13■□□□□ 0.33
SCLT1-202ENST00000439369 FBXO41Q8TF61 875 aa17.13■□□□□ 0.33
SCLT1-202ENST00000439369 ABCA3Q99758 1704 aa17.13■□□□□ 0.33
SCLT1-202ENST00000439369 CNGB1Q14028 1251 aaPredicted RBP17.12■□□□□ 0.33
SCLT1-202ENST00000439369 RTL1A6NKG5 1358 aa17.12■□□□□ 0.33
SCLT1-202ENST00000439369 CPDO75976 1380 aa17.12■□□□□ 0.33
SCLT1-202ENST00000439369 CDK12Q9NYV4 1490 aaPredicted RBP17.12■□□□□ 0.33
SCLT1-202ENST00000439369 MIER1Q8N108 512 aa17.11■□□□□ 0.33
SCLT1-202ENST00000439369 INSRP06213 1382 aa17.11■□□□□ 0.33
SCLT1-202ENST00000439369 TNNT2P45379 298 aaPredicted RBP17.1■□□□□ 0.33
SCLT1-202ENST00000439369 POLKQ9UBT6 870 aa17.1■□□□□ 0.33
SCLT1-202ENST00000439369 HSPA1LP34931 641 aa17.09■□□□□ 0.33
SCLT1-202ENST00000439369 ARHGEF25Q86VW2 580 aa17.09■□□□□ 0.33
SCLT1-202ENST00000439369 SPATA31A6Q5VVP1 1343 aa17.09■□□□□ 0.33
SCLT1-202ENST00000439369 FLT4P35916 1363 aa17.08■□□□□ 0.32
SCLT1-202ENST00000439369 MAP3K19Q56UN5 1328 aa17.08■□□□□ 0.32
SCLT1-202ENST00000439369 MTHFSP49914 203 aa17.08■□□□□ 0.32
SCLT1-202ENST00000439369 CFAP53Q96M91 514 aa17.08■□□□□ 0.32
SCLT1-202ENST00000439369 HAP1P54257 671 aaPredicted RBP17.07■□□□□ 0.32
SCLT1-202ENST00000439369 MAP2P11137 1827 aaKnown RBP17.07■□□□□ 0.32
SCLT1-202ENST00000439369 CABLES1Q8TDN4 633 aa17.06■□□□□ 0.32
SCLT1-202ENST00000439369 BLMP54132 1417 aaPredicted RBP17.05■□□□□ 0.32
SCLT1-202ENST00000439369 LTN1O94822 1766 aa17.05■□□□□ 0.32
SCLT1-202ENST00000439369 RRS1Q15050 365 aaKnown RBP17.05■□□□□ 0.32
SCLT1-202ENST00000439369 IP6K1Q92551 441 aa17.05■□□□□ 0.32
SCLT1-202ENST00000439369 EMILIN1Q9Y6C2 1016 aa17.05■□□□□ 0.32
SCLT1-202ENST00000439369 SOX12O15370 315 aa17.04■□□□□ 0.32
SCLT1-202ENST00000439369 AMPHP49418 695 aa17.04■□□□□ 0.32
SCLT1-202ENST00000439369 COL3A1P02461 1466 aaPredicted RBP17.04■□□□□ 0.32
SCLT1-202ENST00000439369 PEAK1Q9H792 1746 aa17.04■□□□□ 0.32
SCLT1-202ENST00000439369 KIAA0232Q92628 1395 aa17.03■□□□□ 0.32
SCLT1-202ENST00000439369 FBLN1P23142 703 aa17.03■□□□□ 0.32
SCLT1-202ENST00000439369 MRS2Q9HD23 443 aa17.03■□□□□ 0.32
SCLT1-202ENST00000439369 HOXC9P31274 260 aa17.02■□□□□ 0.32
SCLT1-202ENST00000439369 ZC3H6P61129 1189 aaKnown RBP17.02■□□□□ 0.32
SCLT1-202ENST00000439369 PRDM11Q9NQV5 511 aa17.02■□□□□ 0.32
SCLT1-202ENST00000439369 PPM1GO15355 546 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms