RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 CHD1O14646 1710 aa10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.08□□□□□ -0.83e-7■□□□□ 11.1
TMEM39A-202ENST00000438581 RRP9O43818 475 aaKnown RBP10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 PHF8Q9UPP1 1060 aa10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 KIF16BQ96L93 1317 aa10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 PDE4AP27815 886 aa10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 TWISTNBQ3B726 338 aaPredicted RBP10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 PHF23Q9BUL5 403 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 TMPOP42166 694 aaKnown RBP10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 DCTN1Q14203 1278 aa10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 WWC1Q8IX03 1113 aa10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 PRDM11Q9NQV5 511 aa10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 RALGAPBQ86X10 1494 aa10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 ADGRL2O95490 1459 aa10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 ZMYM3Q14202 1370 aa10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 NEXNQ0ZGT2 675 aa10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 ZNF428Q96B54 188 aa10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 PLEKHO1Q53GL0 409 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 AXDND1Q5T1B0 1012 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 ZNF530Q6P9A1 599 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-202ENST00000438581 FCHSD2O94868 740 aa10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 LNPKQ9C0E8 428 aa10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 ATP7AQ04656 1500 aa10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 MBD5Q9P267 1494 aa10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 NUTM2BA6NNL0 878 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 NUTM2EB1AL46 878 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 NUTM2AQ8IVF1 878 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 TOM1L2Q6ZVM7 507 aa10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 PAXIP1Q6ZW49 1069 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-202ENST00000438581 USHBP1Q8N6Y0 703 aa10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 MIS18AQ9NYP9 233 aa10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 ACEP12821 1306 aa10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 RIMS2Q9UQ26 1411 aa10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 DDX54Q8TDD1 881 aaKnown RBP10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 RILPL2Q969X0 211 aa10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 PIP4K2BP78356 416 aa10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 TRIM44Q96DX7 344 aaPredicted RBP10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 NCKAP5LQ9HCH0 1330 aa10.05□□□□□ -0.8
TMEM39A-202ENST00000438581 CLGNO14967 610 aa10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 HSPA2P54652 639 aa10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 WDR63Q8IWG1 891 aa10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 NOB1Q9ULX3 412 aaKnown RBP10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 MEX3CQ5U5Q3 659 aaKnown RBP10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 MCM10Q7L590 875 aa10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 C1orf115Q9H7X2 142 aa10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 FANCIQ9NVI1 1328 aa10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 FYB1O15117 783 aa10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 SLC4A2P04920 1241 aa10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 TATP17735 454 aaPredicted RBP10.04□□□□□ -0.8
TMEM39A-202ENST00000438581 SLC4A3P48751 1232 aa10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 SLFN5Q08AF3 891 aa10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 NOL8Q76FK4 1167 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 ZRANB1Q9UGI0 708 aa10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 DDX58O95786 925 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 NFE2L2Q16236 605 aa10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 FAM161AQ3B820 660 aa10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 YEATS2Q9ULM3 1422 aa10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 RIC3Q7Z5B4 369 aa10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 GPATCH3Q96I76 525 aa10.03□□□□□ -0.8
TMEM39A-202ENST00000438581 HDGFL1Q5TGJ6 251 aa10.02□□□□□ -0.81
TMEM39A-202ENST00000438581 CFAP44Q96MT7 982 aa10.02□□□□□ -0.81
TMEM39A-202ENST00000438581 CARD14Q9BXL6 1004 aa10.02□□□□□ -0.81
TMEM39A-202ENST00000438581 FOXD4L1Q9NU39 408 aa10.02□□□□□ -0.81
TMEM39A-202ENST00000438581 KDM6BO15054 1643 aa10.01□□□□□ -0.81
TMEM39A-202ENST00000438581 CCDC30Q5VVM6 783 aa10.01□□□□□ -0.81
TMEM39A-202ENST00000438581 SMG6Q86US8 1419 aaKnown RBP10.01□□□□□ -0.81
TMEM39A-202ENST00000438581 ATP10AO60312 1499 aa10.01□□□□□ -0.81
TMEM39A-202ENST00000438581 IPO9Q96P70 1041 aaKnown RBP10□□□□□ -0.81
TMEM39A-202ENST00000438581 KCNA6P17658 529 aa10□□□□□ -0.81
TMEM39A-202ENST00000438581 KCNH5Q8NCM2 988 aa10□□□□□ -0.81
TMEM39A-202ENST00000438581 RBM42Q9BTD8 480 aaKnown RBP10□□□□□ -0.81
TMEM39A-202ENST00000438581 TTC37Q6PGP7 1564 aa10□□□□□ -0.81
TMEM39A-202ENST00000438581 MSH5O43196 834 aa10□□□□□ -0.81
TMEM39A-202ENST00000438581 HSP90AB2PQ58FF8 381 aa10□□□□□ -0.81
TMEM39A-202ENST00000438581 PDE3AQ14432 1141 aa10□□□□□ -0.81
TMEM39A-202ENST00000438581 KRT28Q7Z3Y7 464 aa10□□□□□ -0.81
TMEM39A-202ENST00000438581 UBTFL1P0CB47 393 aaPredicted RBP9.99□□□□□ -0.81
TMEM39A-202ENST00000438581 C20orf194Q5TEA3 1177 aa9.99□□□□□ -0.81
TMEM39A-202ENST00000438581 ATF7IPQ6VMQ6 1270 aa9.99□□□□□ -0.81
TMEM39A-202ENST00000438581 SAMD9LQ8IVG5 1584 aa9.99□□□□□ -0.81
TMEM39A-202ENST00000438581 MYO5CQ9NQX4 1742 aa9.99□□□□□ -0.81
TMEM39A-202ENST00000438581 FRAT2O75474 233 aaPredicted RBP9.99□□□□□ -0.81
TMEM39A-202ENST00000438581 PER1O15534 1290 aaPredicted RBP9.99□□□□□ -0.81
TMEM39A-202ENST00000438581 FAM177BA6PVY3 158 aa9.98□□□□□ -0.81
TMEM39A-202ENST00000438581 FAM83GA6ND36 823 aa9.98□□□□□ -0.81
TMEM39A-202ENST00000438581 CABP4P57796 275 aa9.98□□□□□ -0.81
TMEM39A-202ENST00000438581 TTC21BQ7Z4L5 1316 aa9.98□□□□□ -0.81
TMEM39A-202ENST00000438581 NPATQ14207 1427 aa9.98□□□□□ -0.81
TMEM39A-202ENST00000438581 NEO1Q92859 1461 aa9.98□□□□□ -0.81
TMEM39A-202ENST00000438581 MAST1Q9Y2H9 1570 aa9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 ARHGEF12Q9NZN5 1544 aa9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 G3BP1Q13283 466 aaKnown RBP eCLIP9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 CHRNA2Q15822 529 aa9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 SSH1Q8WYL5 1049 aa9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 ANKRD36BQ8N2N9 1353 aa9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 KAT6BQ8WYB5 2073 aa9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 GNAT3A8MTJ3 354 aa9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 MYL6BP14649 208 aa9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 IFIT2P09913 472 aaKnown RBP9.97□□□□□ -0.81
TMEM39A-202ENST00000438581 SPG7Q9UQ90 795 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms