RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CC2D1BQ5T0F9 858 aaKnown RBP19.41■□□□□ 0.7
SF3B1-204ENST00000414963 NRKQ7Z2Y5 1582 aa19.4■□□□□ 0.7
SF3B1-204ENST00000414963 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.4■□□□□ 0.7
SF3B1-204ENST00000414963 CERKQ8TCT0 537 aa19.4■□□□□ 0.7
SF3B1-204ENST00000414963 NPHP3Q7Z494 1330 aa19.4■□□□□ 0.7
SF3B1-204ENST00000414963 TOM1O60784 492 aa19.38■□□□□ 0.69
SF3B1-204ENST00000414963 KRT28Q7Z3Y7 464 aa19.38■□□□□ 0.69
SF3B1-204ENST00000414963 USP31Q70CQ4 1352 aa19.37■□□□□ 0.69
SF3B1-204ENST00000414963 NME9Q86XW9 330 aa19.37■□□□□ 0.69
SF3B1-204ENST00000414963 CCER2I3L3R5 266 aa19.36■□□□□ 0.69
SF3B1-204ENST00000414963 MORC1Q86VD1 984 aa19.36■□□□□ 0.69
SF3B1-204ENST00000414963 GGNBP2Q9H3C7 697 aa19.36■□□□□ 0.69
SF3B1-204ENST00000414963 SBNO1A3KN83 1393 aa19.35■□□□□ 0.69
SF3B1-204ENST00000414963 PXDNQ92626 1479 aa19.35■□□□□ 0.69
SF3B1-204ENST00000414963 SOS2Q07890 1332 aaPredicted RBP19.34■□□□□ 0.69
SF3B1-204ENST00000414963 MYBBP1AQ9BQG0 1328 aaKnown RBP19.34■□□□□ 0.69
SF3B1-204ENST00000414963 SCAF1Q9H7N4 1312 aaKnown RBP19.34■□□□□ 0.69
SF3B1-204ENST00000414963 CNGB1Q14028 1251 aaPredicted RBP19.33■□□□□ 0.68
SF3B1-204ENST00000414963 COG3Q96JB2 828 aa19.33■□□□□ 0.68
SF3B1-204ENST00000414963 OVOS2A0A0J9YW53 1432 aa19.33■□□□□ 0.68
SF3B1-204ENST00000414963 OVOS2Q6IE36 1432 aa19.33■□□□□ 0.68
SF3B1-204ENST00000414963 KIF20BQ96Q89 1820 aa19.32■□□□□ 0.68
SF3B1-204ENST00000414963 TRPM3Q9HCF6 1732 aaPredicted RBP19.31■□□□□ 0.68
SF3B1-204ENST00000414963 PAK3O75914 559 aaPredicted RBP19.31■□□□□ 0.68
SF3B1-204ENST00000414963 PPP2R1AP30153 589 aa19.31■□□□□ 0.68
SF3B1-204ENST00000414963 XPCQ01831 940 aaPredicted RBP19.31■□□□□ 0.68
SF3B1-204ENST00000414963 ABTB2Q8N961 1025 aa19.31■□□□□ 0.68
SF3B1-204ENST00000414963 DDX17Q92841 729 aaKnown RBP19.31■□□□□ 0.68
SF3B1-204ENST00000414963 ZRANB1Q9UGI0 708 aa19.31■□□□□ 0.68
SF3B1-204ENST00000414963 ANKRD26Q9UPS8 1709 aa19.31■□□□□ 0.68
SF3B1-204ENST00000414963 UBAP1LF5GYI3 381 aa19.3■□□□□ 0.68
SF3B1-204ENST00000414963 NLRP13Q86W25 1043 aa19.3■□□□□ 0.68
SF3B1-204ENST00000414963 NLRP6P59044 892 aa19.29■□□□□ 0.68
SF3B1-204ENST00000414963 PIK3C2AO00443 1686 aa19.29■□□□□ 0.68
SF3B1-204ENST00000414963 USP54Q70EL1 1684 aa19.29■□□□□ 0.68
SF3B1-204ENST00000414963 AATKQ6ZMQ8 1374 aa19.29■□□□□ 0.68
SF3B1-204ENST00000414963 NHSL1Q5SYE7 1610 aa19.29■□□□□ 0.68
SF3B1-204ENST00000414963 SPATA31A3Q5VYP0 1347 aa19.28■□□□□ 0.68
SF3B1-204ENST00000414963 ROBO1Q9Y6N7 1651 aa19.28■□□□□ 0.68
SF3B1-204ENST00000414963 AHDC1Q5TGY3 1603 aaPredicted RBP19.27■□□□□ 0.68
SF3B1-204ENST00000414963 TNS3Q68CZ2 1445 aa19.26■□□□□ 0.67
SF3B1-204ENST00000414963 ARHGEF10O15013 1369 aa19.26■□□□□ 0.67
SF3B1-204ENST00000414963 ALS2Q96Q42 1657 aa19.25■□□□□ 0.67
SF3B1-204ENST00000414963 USP19O94966 1318 aa19.25■□□□□ 0.67
SF3B1-204ENST00000414963 TNNT2P45379 298 aaPredicted RBP19.24■□□□□ 0.67
SF3B1-204ENST00000414963 MTHFSP49914 203 aa19.22■□□□□ 0.67
SF3B1-204ENST00000414963 PIP4K2BP78356 416 aa19.22■□□□□ 0.67
SF3B1-204ENST00000414963 CCDC184Q52MB2 194 aa19.22■□□□□ 0.67
SF3B1-204ENST00000414963 NUTM2GQ5VZR2 741 aa19.22■□□□□ 0.67
SF3B1-204ENST00000414963 KCNH5Q8NCM2 988 aa19.22■□□□□ 0.67
SF3B1-204ENST00000414963 LRRC59Q96AG4 307 aaKnown RBP19.22■□□□□ 0.67
SF3B1-204ENST00000414963 POLKQ9UBT6 870 aa19.22■□□□□ 0.67
SF3B1-204ENST00000414963 MARF1Q9Y4F3 1742 aaKnown RBP19.21■□□□□ 0.67
SF3B1-204ENST00000414963 SLIT3O75094 1523 aa19.2■□□□□ 0.66
SF3B1-204ENST00000414963 INSRP06213 1382 aa19.2■□□□□ 0.66
SF3B1-204ENST00000414963 SMG6Q86US8 1419 aaKnown RBP19.2■□□□□ 0.66
SF3B1-204ENST00000414963 LMOD2Q6P5Q4 547 aa19.2■□□□□ 0.66
SF3B1-204ENST00000414963 MRS2Q9HD23 443 aa19.2■□□□□ 0.66
SF3B1-204ENST00000414963 PNPLA6Q8IY17 1366 aa19.19■□□□□ 0.66
SF3B1-204ENST00000414963 MED1Q15648 1581 aaPredicted RBP19.19■□□□□ 0.66
SF3B1-204ENST00000414963 GCP02774 474 aa19.18■□□□□ 0.66
SF3B1-204ENST00000414963 FBLN1P23142 703 aa19.18■□□□□ 0.66
SF3B1-204ENST00000414963 KIF24Q5T7B8 1368 aa19.18■□□□□ 0.66
SF3B1-204ENST00000414963 PNISRQ8TF01 805 aaKnown RBP19.17■□□□□ 0.66
SF3B1-204ENST00000414963 NFAT5O94916 1531 aa19.16■□□□□ 0.66
SF3B1-204ENST00000414963 CFAP53Q96M91 514 aa19.16■□□□□ 0.66
SF3B1-204ENST00000414963 COL16A1Q07092 1604 aaPredicted RBP19.15■□□□□ 0.66
SF3B1-204ENST00000414963 RRS1Q15050 365 aaKnown RBP19.15■□□□□ 0.66
SF3B1-204ENST00000414963 EMILIN1Q9Y6C2 1016 aa19.15■□□□□ 0.66
SF3B1-204ENST00000414963 MAP3K19Q56UN5 1328 aa19.15■□□□□ 0.66
SF3B1-204ENST00000414963 CDK12Q9NYV4 1490 aaPredicted RBP19.14■□□□□ 0.65
SF3B1-204ENST00000414963 ARHGEF25Q86VW2 580 aa19.13■□□□□ 0.65
SF3B1-204ENST00000414963 PHLPP1O60346 1717 aa19.13■□□□□ 0.65
SF3B1-204ENST00000414963 SOX12O15370 315 aa19.12■□□□□ 0.65
SF3B1-204ENST00000414963 MAP2P11137 1827 aaKnown RBP19.11■□□□□ 0.65
SF3B1-204ENST00000414963 CRYBG1Q9Y4K1 1723 aa19.11■□□□□ 0.65
SF3B1-204ENST00000414963 COL3A1P02461 1466 aaPredicted RBP19.11■□□□□ 0.65
SF3B1-204ENST00000414963 RTL1A6NKG5 1358 aa19.11■□□□□ 0.65
SF3B1-204ENST00000414963 CPDO75976 1380 aa19.11■□□□□ 0.65
SF3B1-204ENST00000414963 CABLES1Q8TDN4 633 aa19.11■□□□□ 0.65
SF3B1-204ENST00000414963 FLT4P35916 1363 aa19.1■□□□□ 0.65
SF3B1-204ENST00000414963 PPM1GO15355 546 aaPredicted RBP19.1■□□□□ 0.65
SF3B1-204ENST00000414963 IP6K1Q92551 441 aa19.1■□□□□ 0.65
SF3B1-204ENST00000414963 COL22A1Q8NFW1 1626 aaPredicted RBP19.1■□□□□ 0.65
SF3B1-204ENST00000414963 AMPHP49418 695 aa19.09■□□□□ 0.65
SF3B1-204ENST00000414963 PHRF1Q9P1Y6 1649 aaKnown RBP19.09■□□□□ 0.65
SF3B1-204ENST00000414963 DIAPH1O60610 1272 aaKnown RBP19.08■□□□□ 0.64
SF3B1-204ENST00000414963 HOXC9P31274 260 aa19.08■□□□□ 0.64
SF3B1-204ENST00000414963 PEAK1Q9H792 1746 aa19.08■□□□□ 0.64
SF3B1-204ENST00000414963 IL13P35225 146 aa19.07■□□□□ 0.64
SF3B1-204ENST00000414963 ZC3H6P61129 1189 aaKnown RBP19.06■□□□□ 0.64
SF3B1-204ENST00000414963 HSP90AB2PQ58FF8 381 aa19.06■□□□□ 0.64
SF3B1-204ENST00000414963 NUDCQ9Y266 331 aa19.06■□□□□ 0.64
SF3B1-204ENST00000414963 ABCC6O95255 1503 aa19.05■□□□□ 0.64
SF3B1-204ENST00000414963 JCADQ9P266 1359 aa19.05■□□□□ 0.64
SF3B1-204ENST00000414963 PLEKHG5O94827 1062 aa19.04■□□□□ 0.64
SF3B1-204ENST00000414963 HSPA1LP34931 641 aa19.04■□□□□ 0.64
SF3B1-204ENST00000414963 WDR43Q15061 677 aaKnown RBP eCLIP19.04■□□□□ 0.645e-8■■□□□ 13.9
SF3B1-204ENST00000414963 FAM9BQ8IZU0 186 aa19.04■□□□□ 0.64
SF3B1-204ENST00000414963 ADAMTS8Q9UP79 889 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 230.8 ms