RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 TPM3P06753 285 aa20.97■□□□□ 0.95
PHRF1-202ENST00000413872 CNTROBQ8N137 903 aa20.97■□□□□ 0.95
PHRF1-202ENST00000413872 DDX49Q9Y6V7 483 aaKnown RBP20.97■□□□□ 0.95
PHRF1-202ENST00000413872 WASHC4Q2M389 1173 aa20.96■□□□□ 0.95
PHRF1-202ENST00000413872 CREBRFQ8IUR6 639 aa20.96■□□□□ 0.95
PHRF1-202ENST00000413872 CEP89Q96ST8 783 aa20.96■□□□□ 0.95
PHRF1-202ENST00000413872 PHF23Q9BUL5 403 aaPredicted RBP20.96■□□□□ 0.95
PHRF1-202ENST00000413872 CCT4P50991 539 aaKnown RBP20.95■□□□□ 0.94
PHRF1-202ENST00000413872 AKNAQ7Z591 1439 aa20.95■□□□□ 0.94
PHRF1-202ENST00000413872 HIP1O00291 1037 aa20.95■□□□□ 0.94
PHRF1-202ENST00000413872 SURF6O75683 361 aaKnown RBP20.95■□□□□ 0.94
PHRF1-202ENST00000413872 ABCC5O15440 1437 aa20.95■□□□□ 0.94
PHRF1-202ENST00000413872 FCHSD2O94868 740 aa20.95■□□□□ 0.94
PHRF1-202ENST00000413872 TSR1Q2NL82 804 aaKnown RBP20.95■□□□□ 0.94
PHRF1-202ENST00000413872 GOLGA6L19H0YKK7 550 aa20.94■□□□□ 0.94
PHRF1-202ENST00000413872 SF3B2Q13435 895 aaKnown RBP20.94■□□□□ 0.94
PHRF1-202ENST00000413872 SAFBQ15424 915 aaKnown RBP eCLIP20.94■□□□□ 0.94
PHRF1-202ENST00000413872 ANO8Q9HCE9 1232 aaPredicted RBP20.94■□□□□ 0.94
PHRF1-202ENST00000413872 HOOK1Q9UJC3 728 aaKnown RBP20.94■□□□□ 0.94
PHRF1-202ENST00000413872 GNAI2P04899 355 aa20.94■□□□□ 0.94
PHRF1-202ENST00000413872 ZNF428Q96B54 188 aa20.94■□□□□ 0.94
PHRF1-202ENST00000413872 PTPN23Q9H3S7 1636 aa20.94■□□□□ 0.94
PHRF1-202ENST00000413872 BECN2A8MW95 431 aa20.93■□□□□ 0.94
PHRF1-202ENST00000413872 NOC3LQ8WTT2 800 aaKnown RBP20.93■□□□□ 0.94
PHRF1-202ENST00000413872 TPM1P09493 284 aa20.92■□□□□ 0.94
PHRF1-202ENST00000413872 PSMA5P28066 241 aa20.92■□□□□ 0.94
PHRF1-202ENST00000413872 GCC1Q96CN9 775 aa20.92■□□□□ 0.94
PHRF1-202ENST00000413872 SMC3Q9UQE7 1217 aa20.92■□□□□ 0.94
PHRF1-202ENST00000413872 FSD1Q9BTV5 496 aa20.91■□□□□ 0.94
PHRF1-202ENST00000413872 NUCB2P80303 420 aa20.91■□□□□ 0.94
PHRF1-202ENST00000413872 CCDC27Q2M243 656 aa20.91■□□□□ 0.94
PHRF1-202ENST00000413872 KLHL34Q8N239 644 aa20.91■□□□□ 0.94
PHRF1-202ENST00000413872 NUTM2BA6NNL0 878 aaPredicted RBP20.9■□□□□ 0.94
PHRF1-202ENST00000413872 NUTM2EB1AL46 878 aaPredicted RBP20.9■□□□□ 0.94
PHRF1-202ENST00000413872 SLC4A2P04920 1241 aa20.9■□□□□ 0.94
PHRF1-202ENST00000413872 NCBP3Q53F19 620 aaKnown RBP20.9■□□□□ 0.94
PHRF1-202ENST00000413872 NUTM2AQ8IVF1 878 aaPredicted RBP20.9■□□□□ 0.94
PHRF1-202ENST00000413872 DDX54Q8TDD1 881 aaKnown RBP20.9■□□□□ 0.94
PHRF1-202ENST00000413872 GNL3LQ9NVN8 582 aaKnown RBP20.9■□□□□ 0.94
PHRF1-202ENST00000413872 CHMP5Q9NZZ3 219 aa20.9■□□□□ 0.94
PHRF1-202ENST00000413872 FANCAO15360 1455 aa20.89■□□□□ 0.94
PHRF1-202ENST00000413872 DCAF8L1A6NGE4 600 aa20.89■□□□□ 0.93
PHRF1-202ENST00000413872 SRCIN1Q9C0H9 1055 aa20.89■□□□□ 0.93
PHRF1-202ENST00000413872 PES1O00541 588 aaKnown RBP20.89■□□□□ 0.93
PHRF1-202ENST00000413872 SART3Q15020 963 aaKnown RBP20.89■□□□□ 0.93
PHRF1-202ENST00000413872 ANKRD20A12PQ8NF67 263 aa20.88■□□□□ 0.93
PHRF1-202ENST00000413872 NSD3Q9BZ95 1437 aa20.88■□□□□ 0.93
PHRF1-202ENST00000413872 ZNF608Q9ULD9 1512 aaPredicted RBP20.88■□□□□ 0.93
PHRF1-202ENST00000413872 XBP1P17861 261 aa20.87■□□□□ 0.93
PHRF1-202ENST00000413872 C22orf23Q9BZE7 217 aa20.87■□□□□ 0.93
PHRF1-202ENST00000413872 CCDC158Q5M9N0 1113 aa20.86■□□□□ 0.93
PHRF1-202ENST00000413872 CDCA7LQ96GN5 454 aa20.86■□□□□ 0.93
PHRF1-202ENST00000413872 BIVM-ERCC5R4GMW8 1640 aa20.86■□□□□ 0.93
PHRF1-202ENST00000413872 NCOA1Q15788 1441 aa20.86■□□□□ 0.93
PHRF1-202ENST00000413872 SLC3A2P08195 630 aaKnown RBP20.86■□□□□ 0.93
PHRF1-202ENST00000413872 BRMS1Q9HCU9 246 aa20.86■□□□□ 0.93
PHRF1-202ENST00000413872 CNNM1Q9NRU3 951 aa20.86■□□□□ 0.93
PHRF1-202ENST00000413872 FAM135AQ9P2D6 1515 aa20.84■□□□□ 0.93
PHRF1-202ENST00000413872 NFE2L2Q16236 605 aa20.84■□□□□ 0.93
PHRF1-202ENST00000413872 CWC22Q9HCG8 908 aaKnown RBP20.84■□□□□ 0.93
PHRF1-202ENST00000413872 DHX29Q7Z478 1369 aaKnown RBP20.84■□□□□ 0.93
PHRF1-202ENST00000413872 FAM177BA6PVY3 158 aa20.84■□□□□ 0.93
PHRF1-202ENST00000413872 RRS1Q15050 365 aaKnown RBP20.84■□□□□ 0.93
PHRF1-202ENST00000413872 BICD2Q8TD16 824 aa20.84■□□□□ 0.93
PHRF1-202ENST00000413872 NOB1Q9ULX3 412 aaKnown RBP20.84■□□□□ 0.93
PHRF1-202ENST00000413872 DMRT2Q9Y5R5 561 aa20.84■□□□□ 0.93
PHRF1-202ENST00000413872 VPS37CA5D8V6 355 aaPredicted RBP20.83■□□□□ 0.93
PHRF1-202ENST00000413872 TSR2Q969E8 191 aaKnown RBP20.83■□□□□ 0.93
PHRF1-202ENST00000413872 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.83■□□□□ 0.933e-7■■■□□ 16.9
PHRF1-202ENST00000413872 CCDC43Q96MW1 224 aaKnown RBP20.83■□□□□ 0.92
PHRF1-202ENST00000413872 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.82■□□□□ 0.92
PHRF1-202ENST00000413872 BTBD11A6QL63 1104 aa20.82■□□□□ 0.92
PHRF1-202ENST00000413872 IDI1Q13907 227 aa20.81■□□□□ 0.92
PHRF1-202ENST00000413872 FOXD4L6Q3SYB3 417 aaPredicted RBP20.81■□□□□ 0.92
PHRF1-202ENST00000413872 FOXD4L3Q6VB84 417 aaPredicted RBP20.81■□□□□ 0.92
PHRF1-202ENST00000413872 ATF7IPQ6VMQ6 1270 aa20.81■□□□□ 0.92
PHRF1-202ENST00000413872 GNAT3A8MTJ3 354 aa20.81■□□□□ 0.92
PHRF1-202ENST00000413872 MCM2P49736 904 aa20.81■□□□□ 0.92
PHRF1-202ENST00000413872 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.81■□□□□ 0.92
PHRF1-202ENST00000413872 PHF8Q9UPP1 1060 aa20.81■□□□□ 0.92
PHRF1-202ENST00000413872 AMOTL2Q9Y2J4 779 aa20.81■□□□□ 0.92
PHRF1-202ENST00000413872 LRPPRCP42704 1394 aaKnown RBP20.8■□□□□ 0.92
PHRF1-202ENST00000413872 ZC3H6P61129 1189 aaKnown RBP20.8■□□□□ 0.92
PHRF1-202ENST00000413872 CCDC73Q6ZRK6 1079 aa20.8■□□□□ 0.92
PHRF1-202ENST00000413872 FYB1O15117 783 aa20.8■□□□□ 0.92
PHRF1-202ENST00000413872 TTC39AQ5SRH9 613 aa20.8■□□□□ 0.92
PHRF1-202ENST00000413872 WAPLQ7Z5K2 1190 aa20.8■□□□□ 0.92
PHRF1-202ENST00000413872 DNAJC2Q99543 621 aaKnown RBP20.8■□□□□ 0.92
PHRF1-202ENST00000413872 TEX14Q8IWB6 1497 aa20.8■□□□□ 0.92
PHRF1-202ENST00000413872 AMOTQ4VCS5 1084 aa20.8■□□□□ 0.92
PHRF1-202ENST00000413872 PIP4K2BP78356 416 aa20.79■□□□□ 0.92
PHRF1-202ENST00000413872 CCDC57Q2TAC2 916 aa20.79■□□□□ 0.92
PHRF1-202ENST00000413872 WASLO00401 505 aaPredicted RBP20.78■□□□□ 0.92
PHRF1-202ENST00000413872 IPO7O95373 1038 aaKnown RBP20.78■□□□□ 0.92
PHRF1-202ENST00000413872 STARD3NLO95772 234 aa20.78■□□□□ 0.92
PHRF1-202ENST00000413872 LRRCC1Q9C099 1032 aa20.78■□□□□ 0.92
PHRF1-202ENST00000413872 SLC4A3P48751 1232 aa20.78■□□□□ 0.92
PHRF1-202ENST00000413872 MPHOSPH8Q99549 860 aa20.78■□□□□ 0.92
PHRF1-202ENST00000413872 XPCQ01831 940 aaPredicted RBP20.77■□□□□ 0.92
PHRF1-202ENST00000413872 ABCC11Q96J66 1382 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms