RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 ANKRD33BA6NCL7 494 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 EIF4G2P78344 907 aaKnown RBP eCLIP6.41□□□□□ -1.38
HERC4-205ENST00000412272 HDAC1Q13547 482 aaPredicted RBP6.41□□□□□ -1.38
HERC4-205ENST00000412272 FEZ1Q99689 392 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 CADPSQ9ULU8 1353 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 FYCO1Q9BQS8 1478 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 GOLGA6CA6NDK9 693 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 GOLGA6BA6NDN3 693 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 GOLGA6DP0CG33 693 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 PAX7P23759 505 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 GOLGA6AQ9NYA3 693 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 OGFRQ9NZT2 677 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 YEATS2Q9ULM3 1422 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 GAPVD1Q14C86 1478 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 U2AF2P26368 475 aaKnown RBP eCLIP6.4□□□□□ -1.384e-7■■■□□ 16.6
HERC4-205ENST00000412272 CADPS2Q86UW7 1296 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 KDM4CQ9H3R0 1056 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 SMC3Q9UQE7 1217 aa6.4□□□□□ -1.38
HERC4-205ENST00000412272 KIF3CO14782 793 aa6.4□□□□□ -1.39
HERC4-205ENST00000412272 BECN1Q14457 450 aa6.4□□□□□ -1.39
HERC4-205ENST00000412272 PCF11O94913 1555 aaKnown RBP6.4□□□□□ -1.39
HERC4-205ENST00000412272 CTAGE5O15320 804 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 MCM5P33992 734 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 GYS2P54840 703 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 NME8Q8N427 588 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 ATL2Q8NHH9 583 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 TRERF1Q96PN7 1200 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 RCAN3Q9UKA8 241 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 NAIPQ13075 1403 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 NRDCO43847 1150 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 MCM4P33991 863 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 NUTM2GQ5VZR2 741 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 UHRF1BP1LA0JNW5 1464 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 TOMM22Q9NS69 142 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 FMN1Q68DA7 1419 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 TRAK2O60296 914 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 MSL3Q8N5Y2 521 aaKnown RBP6.39□□□□□ -1.39
HERC4-205ENST00000412272 RASSF4Q9H2L5 321 aa6.39□□□□□ -1.39
HERC4-205ENST00000412272 PDCL2Q8N4E4 241 aa6.38□□□□□ -1.39
HERC4-205ENST00000412272 NFATC2IPQ8NCF5 419 aa6.38□□□□□ -1.39
HERC4-205ENST00000412272 PROCA1Q8NCQ7 364 aaPredicted RBP6.38□□□□□ -1.39
HERC4-205ENST00000412272 ANKRD7Q92527 254 aa6.38□□□□□ -1.39
HERC4-205ENST00000412272 HIRIP3Q9BW71 556 aaPredicted RBP6.38□□□□□ -1.39
HERC4-205ENST00000412272 ARHGEF11O15085 1522 aa6.38□□□□□ -1.39
HERC4-205ENST00000412272 RPRD2Q5VT52 1461 aaKnown RBP6.38□□□□□ -1.39
HERC4-205ENST00000412272 EIF3AQ14152 1382 aaKnown RBP6.38□□□□□ -1.39
HERC4-205ENST00000412272 ZBTB7CA1YPR0 619 aa6.38□□□□□ -1.39
HERC4-205ENST00000412272 PAXBP1Q9Y5B6 917 aa6.38□□□□□ -1.39
HERC4-205ENST00000412272 PLXNC1O60486 1568 aa6.38□□□□□ -1.39
HERC4-205ENST00000412272 TCOF1Q13428 1488 aaKnown RBP6.38□□□□□ -1.39
HERC4-205ENST00000412272 IPO7O95373 1038 aaKnown RBP6.37□□□□□ -1.39
HERC4-205ENST00000412272 SSFA2P28290 1259 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 HMGN5P82970 282 aaKnown RBP6.37□□□□□ -1.39
HERC4-205ENST00000412272 MORC1Q86VD1 984 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 EFCAB5A4FU69 1503 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 KIF7Q2M1P5 1343 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 DDX11L8A8MPP1 907 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 SKILP12757 684 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 SF3A1Q15459 793 aaKnown RBP6.37□□□□□ -1.39
HERC4-205ENST00000412272 RIPOR2Q9Y4F9 1068 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 DDIT3P35638 169 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 HNRNPH2P55795 449 aaKnown RBP6.37□□□□□ -1.39
HERC4-205ENST00000412272 PPP2R5AQ15172 486 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 CCDC97Q96F63 343 aaPredicted RBP6.37□□□□□ -1.39
HERC4-205ENST00000412272 BCL2L12Q9HB09 334 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 FGD6Q6ZV73 1430 aa6.37□□□□□ -1.39
HERC4-205ENST00000412272 HSP90AB1P08238 724 aaKnown RBP6.36□□□□□ -1.39
HERC4-205ENST00000412272 CASQ1P31415 396 aa6.36□□□□□ -1.39
HERC4-205ENST00000412272 PRIMPOLQ96LW4 560 aa6.36□□□□□ -1.39
HERC4-205ENST00000412272 PAIP2Q9BPZ3 127 aaKnown RBP6.36□□□□□ -1.39
HERC4-205ENST00000412272 ZKSCAN5Q9Y2L8 839 aa6.36□□□□□ -1.39
HERC4-205ENST00000412272 BRD1O95696 1058 aa6.36□□□□□ -1.39
HERC4-205ENST00000412272 RTEL1-TNFRSF6BF6WH68 1400 aa6.36□□□□□ -1.39
HERC4-205ENST00000412272 SART3Q15020 963 aaKnown RBP6.36□□□□□ -1.39
HERC4-205ENST00000412272 UPF2Q9HAU5 1272 aaKnown RBP6.36□□□□□ -1.39
HERC4-205ENST00000412272 ATG3Q9NT62 314 aa6.36□□□□□ -1.39
HERC4-205ENST00000412272 JRKLQ9Y4A0 524 aa6.36□□□□□ -1.39
HERC4-205ENST00000412272 ATP2B1P20020 1258 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 CD151P48509 253 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 RBM25P49756 843 aaKnown RBP6.35□□□□□ -1.39
HERC4-205ENST00000412272 FAM184AQ8NB25 1140 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 TBC1D22AQ8WUA7 517 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 C1orf115Q9H7X2 142 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 ZNF446Q9NWS9 450 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 MTMR7Q9Y216 660 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 DDX49Q9Y6V7 483 aaKnown RBP6.35□□□□□ -1.39
HERC4-205ENST00000412272 ERICH4A6NGS2 130 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 LIG1P18858 919 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 TRDNQ13061 729 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 FOXD4L5Q5VV16 416 aaPredicted RBP6.35□□□□□ -1.39
HERC4-205ENST00000412272 FOXD4L4Q8WXT5 416 aaPredicted RBP6.35□□□□□ -1.39
HERC4-205ENST00000412272 DRC1Q96MC2 740 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 MAF1Q9H063 256 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 NUCKS1Q9H1E3 243 aaKnown RBP6.35□□□□□ -1.39
HERC4-205ENST00000412272 POLKQ9UBT6 870 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 ANAPC4Q9UJX5 808 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 NUB1Q9Y5A7 615 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 KIF21AQ7Z4S6 1674 aa6.35□□□□□ -1.39
HERC4-205ENST00000412272 EPRSP07814 1512 aaKnown RBP6.35□□□□□ -1.39
HERC4-205ENST00000412272 CAND2O75155 1236 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms