RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 UGGT1Q9NYU2 1555 aa11.41□□□□□ -0.58
LIG4-202ENST00000405925 C19orf44Q9H6X5 657 aa11.41□□□□□ -0.58
LIG4-202ENST00000405925 ZRANB1Q9UGI0 708 aa11.41□□□□□ -0.58
LIG4-202ENST00000405925 AIMP1Q12904 312 aaKnown RBP11.4□□□□□ -0.58
LIG4-202ENST00000405925 TWISTNBQ3B726 338 aaPredicted RBP11.4□□□□□ -0.58
LIG4-202ENST00000405925 C9orf78Q9NZ63 289 aaPredicted RBP11.4□□□□□ -0.58
LIG4-202ENST00000405925 DDX19BQ9UMR2 479 aa11.4□□□□□ -0.58
LIG4-202ENST00000405925 NSD2O96028 1365 aa11.4□□□□□ -0.58
LIG4-202ENST00000405925 NFE2L2Q16236 605 aa11.4□□□□□ -0.58
LIG4-202ENST00000405925 EIF5BO60841 1220 aaKnown RBP11.4□□□□□ -0.58
LIG4-202ENST00000405925 ADAMTS2O95450 1211 aa11.4□□□□□ -0.58
LIG4-202ENST00000405925 CARD14Q9BXL6 1004 aa11.4□□□□□ -0.58
LIG4-202ENST00000405925 DDX58O95786 925 aaKnown RBP11.4□□□□□ -0.59
LIG4-202ENST00000405925 SHROOM2Q13796 1616 aa11.39□□□□□ -0.59
LIG4-202ENST00000405925 WWC1Q8IX03 1113 aa11.39□□□□□ -0.59
LIG4-202ENST00000405925 DCTN1Q14203 1278 aa11.39□□□□□ -0.59
LIG4-202ENST00000405925 RIMBP3CA6NJZ7 1639 aa11.39□□□□□ -0.59
LIG4-202ENST00000405925 RIMBP3BA6NNM3 1639 aa11.39□□□□□ -0.59
LIG4-202ENST00000405925 RIMBP3Q9UFD9 1639 aa11.39□□□□□ -0.59
LIG4-202ENST00000405925 NBR1Q14596 966 aa11.39□□□□□ -0.59
LIG4-202ENST00000405925 WDR63Q8IWG1 891 aa11.39□□□□□ -0.59
LIG4-202ENST00000405925 GORABQ5T7V8 394 aa11.38□□□□□ -0.59
LIG4-202ENST00000405925 PUS7Q96PZ0 661 aaKnown RBP11.38□□□□□ -0.59
LIG4-202ENST00000405925 SPG7Q9UQ90 795 aa11.38□□□□□ -0.59
LIG4-202ENST00000405925 CHRNA2Q15822 529 aa11.38□□□□□ -0.59
LIG4-202ENST00000405925 KDM5DQ9BY66 1539 aa11.38□□□□□ -0.59
LIG4-202ENST00000405925 NPHP3Q7Z494 1330 aa11.38□□□□□ -0.59
LIG4-202ENST00000405925 BCAR3O75815 825 aa11.38□□□□□ -0.59
LIG4-202ENST00000405925 HSP90AB2PQ58FF8 381 aa11.38□□□□□ -0.59
LIG4-202ENST00000405925 HDGFL1Q5TGJ6 251 aa11.37□□□□□ -0.59
LIG4-202ENST00000405925 MCM10Q7L590 875 aa11.37□□□□□ -0.59
LIG4-202ENST00000405925 A0A1W2PP64 1363 aa11.37□□□□□ -0.59
LIG4-202ENST00000405925 ANKRD45Q5TZF3 282 aa11.37□□□□□ -0.59
LIG4-202ENST00000405925 ABCA9Q8IUA7 1624 aa11.37□□□□□ -0.59
LIG4-202ENST00000405925 SPATA31E1Q6ZUB1 1445 aa11.37□□□□□ -0.59
LIG4-202ENST00000405925 PLA2R1Q13018 1463 aa11.36□□□□□ -0.59
LIG4-202ENST00000405925 MSH5O43196 834 aa11.36□□□□□ -0.59
LIG4-202ENST00000405925 CENPQQ7L2Z9 268 aaPredicted RBP11.36□□□□□ -0.59
LIG4-202ENST00000405925 RBM42Q9BTD8 480 aaKnown RBP11.36□□□□□ -0.59
LIG4-202ENST00000405925 TTC21AQ8NDW8 1320 aa11.36□□□□□ -0.59
LIG4-202ENST00000405925 PRDM15P57071 1507 aaPredicted RBP11.36□□□□□ -0.59
LIG4-202ENST00000405925 CABP4P57796 275 aa11.36□□□□□ -0.59
LIG4-202ENST00000405925 FGD1P98174 961 aa11.36□□□□□ -0.59
LIG4-202ENST00000405925 CCDC30Q5VVM6 783 aa11.36□□□□□ -0.59
LIG4-202ENST00000405925 TRIM6-TRIM34B2RNG4 842 aa11.36□□□□□ -0.59
LIG4-202ENST00000405925 RIC3Q7Z5B4 369 aa11.36□□□□□ -0.59
LIG4-202ENST00000405925 COL17A1Q9UMD9 1497 aaPredicted RBP11.36□□□□□ -0.59
LIG4-202ENST00000405925 CDC42BPBQ9Y5S2 1711 aa11.35□□□□□ -0.59
LIG4-202ENST00000405925 PER1O15534 1290 aaPredicted RBP11.35□□□□□ -0.59
LIG4-202ENST00000405925 ASXL1Q8IXJ9 1541 aa11.35□□□□□ -0.59
LIG4-202ENST00000405925 MIS18AQ9NYP9 233 aa11.35□□□□□ -0.59
LIG4-202ENST00000405925 GNAT3A8MTJ3 354 aa11.35□□□□□ -0.59
LIG4-202ENST00000405925 UBAP1LF5GYI3 381 aa11.35□□□□□ -0.59
LIG4-202ENST00000405925 PLXNC1O60486 1568 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 PTPRTO14522 1441 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 SLC4A2P04920 1241 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 ERVK-7P63135 1459 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 ABCC3O15438 1527 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 SLFN5Q08AF3 891 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 CABLES1Q8TDN4 633 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 ORAI2Q96SN7 254 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 ABCC11Q96J66 1382 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 TRPM2O94759 1503 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 POLKQ9UBT6 870 aa11.34□□□□□ -0.59
LIG4-202ENST00000405925 KIAA1211Q6ZU35 1233 aa11.33□□□□□ -0.6
LIG4-202ENST00000405925 PARD3Q8TEW0 1356 aa11.33□□□□□ -0.6
LIG4-202ENST00000405925 GPATCH3Q96I76 525 aa11.33□□□□□ -0.6
LIG4-202ENST00000405925 TAOK2Q9UL54 1235 aa11.33□□□□□ -0.6
LIG4-202ENST00000405925 PLEKHH1Q9ULM0 1364 aa11.33□□□□□ -0.6
LIG4-202ENST00000405925 LRRIQ1Q96JM4 1722 aa11.33□□□□□ -0.6
LIG4-202ENST00000405925 EFCAB6Q5THR3 1501 aa11.33□□□□□ -0.6
LIG4-202ENST00000405925 TOM1O60784 492 aa11.32□□□□□ -0.6
LIG4-202ENST00000405925 METP08581 1390 aa11.32□□□□□ -0.6
LIG4-202ENST00000405925 ANKRD24Q8TF21 1146 aa11.32□□□□□ -0.6
LIG4-202ENST00000405925 NAP1L2Q9ULW6 460 aaPredicted RBP11.32□□□□□ -0.6
LIG4-202ENST00000405925 BTBD11A6QL63 1104 aa11.32□□□□□ -0.6
LIG4-202ENST00000405925 HSP90AB1P08238 724 aaKnown RBP11.32□□□□□ -0.6
LIG4-202ENST00000405925 MFAP1P55081 439 aaKnown RBP11.32□□□□□ -0.6
LIG4-202ENST00000405925 CFAP44Q96MT7 982 aa11.32□□□□□ -0.6
LIG4-202ENST00000405925 NOB1Q9ULX3 412 aaKnown RBP11.32□□□□□ -0.6
LIG4-202ENST00000405925 MCCP23508 829 aa11.31□□□□□ -0.6
LIG4-202ENST00000405925 NGLY1Q96IV0 654 aa11.31□□□□□ -0.6
LIG4-202ENST00000405925 MPRIPQ6WCQ1 1025 aa11.31□□□□□ -0.6
LIG4-202ENST00000405925 RBM19Q9Y4C8 960 aaKnown RBP11.31□□□□□ -0.6
LIG4-202ENST00000405925 ZNF428Q96B54 188 aa11.3□□□□□ -0.6
LIG4-202ENST00000405925 UBTFL1P0CB47 393 aaPredicted RBP11.3□□□□□ -0.6
LIG4-202ENST00000405925 AEBP1Q8IUX7 1158 aa11.3□□□□□ -0.6
LIG4-202ENST00000405925 TMX4Q9H1E5 349 aaPredicted RBP11.3□□□□□ -0.6
LIG4-202ENST00000405925 AMOTQ4VCS5 1084 aa11.3□□□□□ -0.6
LIG4-202ENST00000405925 FAM83GA6ND36 823 aa11.3□□□□□ -0.6
LIG4-202ENST00000405925 PTCD1O75127 700 aaKnown RBP11.3□□□□□ -0.6
LIG4-202ENST00000405925 CT47B1P0C2W7 299 aaPredicted RBP11.3□□□□□ -0.6
LIG4-202ENST00000405925 PDE3AQ14432 1141 aa11.3□□□□□ -0.6
LIG4-202ENST00000405925 GCP02774 474 aa11.29□□□□□ -0.6
LIG4-202ENST00000405925 ATF7IPQ6VMQ6 1270 aa11.29□□□□□ -0.6
LIG4-202ENST00000405925 LNPKQ9C0E8 428 aa11.29□□□□□ -0.6
LIG4-202ENST00000405925 FRAT2O75474 233 aaPredicted RBP11.29□□□□□ -0.6
LIG4-202ENST00000405925 EIF4A2Q14240 407 aaKnown RBP11.29□□□□□ -0.6
LIG4-202ENST00000405925 ARHGAP31Q2M1Z3 1444 aa11.29□□□□□ -0.6
LIG4-202ENST00000405925 MYL6BP14649 208 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms