RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 KIAA1211Q6ZU35 1233 aa14.71□□□□□ -0.05
HMGB1-206ENST00000405805 MRE11P49959 708 aa14.71□□□□□ -0.06
HMGB1-206ENST00000405805 CHAF1AQ13111 956 aaPredicted RBP14.71□□□□□ -0.06
HMGB1-206ENST00000405805 CAVIN1Q6NZI2 390 aaKnown RBP14.71□□□□□ -0.06
HMGB1-206ENST00000405805 ARHGEF5Q12774 1597 aa14.71□□□□□ -0.06
HMGB1-206ENST00000405805 LTV1Q96GA3 475 aaPredicted RBP14.7□□□□□ -0.06
HMGB1-206ENST00000405805 GRPEL1Q9HAV7 217 aa14.7□□□□□ -0.06
HMGB1-206ENST00000405805 WAPLQ7Z5K2 1190 aa14.7□□□□□ -0.06
HMGB1-206ENST00000405805 COL17A1Q9UMD9 1497 aaPredicted RBP14.7□□□□□ -0.06
HMGB1-206ENST00000405805 ZNF428Q96B54 188 aa14.7□□□□□ -0.06
HMGB1-206ENST00000405805 RRAGDQ9NQL2 400 aaPredicted RBP14.69□□□□□ -0.06
HMGB1-206ENST00000405805 CHD1LQ86WJ1 897 aa14.69□□□□□ -0.06
HMGB1-206ENST00000405805 C14orf93Q9H972 538 aaKnown RBP14.69□□□□□ -0.06
HMGB1-206ENST00000405805 TRHP20396 242 aaPredicted RBP14.69□□□□□ -0.06
HMGB1-206ENST00000405805 OS9Q13438 667 aaPredicted RBP14.69□□□□□ -0.06
HMGB1-206ENST00000405805 TXNDC2Q86VQ3 553 aa14.68□□□□□ -0.06
HMGB1-206ENST00000405805 GPRASP1Q5JY77 1395 aa14.68□□□□□ -0.06
HMGB1-206ENST00000405805 KIF16BQ96L93 1317 aa14.68□□□□□ -0.06
HMGB1-206ENST00000405805 CDK19Q9BWU1 502 aa14.67□□□□□ -0.06
HMGB1-206ENST00000405805 LMOD2Q6P5Q4 547 aa14.67□□□□□ -0.06
HMGB1-206ENST00000405805 RTF1Q92541 710 aaKnown RBP14.67□□□□□ -0.06
HMGB1-206ENST00000405805 TPM2P07951 284 aa14.67□□□□□ -0.06
HMGB1-206ENST00000405805 NASPP49321 788 aaPredicted RBP14.66□□□□□ -0.06
HMGB1-206ENST00000405805 RRS1Q15050 365 aaKnown RBP14.66□□□□□ -0.06
HMGB1-206ENST00000405805 TNPO1Q92973 898 aaKnown RBP14.66□□□□□ -0.06
HMGB1-206ENST00000405805 SLC52A1Q9NWF4 448 aa14.66□□□□□ -0.06
HMGB1-206ENST00000405805 PRPF40AO75400 957 aaKnown RBP14.66□□□□□ -0.06
HMGB1-206ENST00000405805 NAP1L2Q9ULW6 460 aaPredicted RBP14.66□□□□□ -0.06
HMGB1-206ENST00000405805 VGLL3A8MV65 326 aa14.66□□□□□ -0.06
HMGB1-206ENST00000405805 PTMSP20962 102 aa14.66□□□□□ -0.06
HMGB1-206ENST00000405805 SSFA2P28290 1259 aa14.66□□□□□ -0.06
HMGB1-206ENST00000405805 ESPNB1AK53 854 aa14.65□□□□□ -0.06
HMGB1-206ENST00000405805 ADCY10Q96PN6 1610 aa14.65□□□□□ -0.06
HMGB1-206ENST00000405805 MAGI2Q86UL8 1455 aa14.65□□□□□ -0.06
HMGB1-206ENST00000405805 UGGT1Q9NYU2 1555 aa14.65□□□□□ -0.06
HMGB1-206ENST00000405805 PREX2Q70Z35 1606 aa14.65□□□□□ -0.06
HMGB1-206ENST00000405805 SMARCA5O60264 1052 aaPredicted RBP14.65□□□□□ -0.06
HMGB1-206ENST00000405805 FGD1P98174 961 aa14.65□□□□□ -0.06
HMGB1-206ENST00000405805 TWISTNBQ3B726 338 aaPredicted RBP14.65□□□□□ -0.06
HMGB1-206ENST00000405805 KCNJ4P48050 445 aa14.65□□□□□ -0.06
HMGB1-206ENST00000405805 MIS18AQ9NYP9 233 aa14.65□□□□□ -0.06
HMGB1-206ENST00000405805 ST18O60284 1047 aa14.64□□□□□ -0.07
HMGB1-206ENST00000405805 AEBP2Q6ZN18 517 aaPredicted RBP14.64□□□□□ -0.07
HMGB1-206ENST00000405805 KIAA2012Q0VF49 1180 aa14.64□□□□□ -0.07
HMGB1-206ENST00000405805 PDCL3Q9H2J4 239 aa14.64□□□□□ -0.07
HMGB1-206ENST00000405805 CHMP3Q9Y3E7 222 aa14.64□□□□□ -0.07
HMGB1-206ENST00000405805 ANO2Q9NQ90 1003 aa14.63□□□□□ -0.07
HMGB1-206ENST00000405805 MAST1Q9Y2H9 1570 aa14.63□□□□□ -0.07
HMGB1-206ENST00000405805 CDC42BPBQ9Y5S2 1711 aa14.63□□□□□ -0.07
HMGB1-206ENST00000405805 HDGFP51858 240 aaKnown RBP14.63□□□□□ -0.07
HMGB1-206ENST00000405805 RTEL1-TNFRSF6BF6WH68 1400 aa14.63□□□□□ -0.07
HMGB1-206ENST00000405805 FAM83GA6ND36 823 aa14.63□□□□□ -0.07
HMGB1-206ENST00000405805 KDM5DQ9BY66 1539 aa14.63□□□□□ -0.07
HMGB1-206ENST00000405805 ATP10AO60312 1499 aa14.62□□□□□ -0.07
HMGB1-206ENST00000405805 RPGRIP1LQ68CZ1 1315 aa14.62□□□□□ -0.07
HMGB1-206ENST00000405805 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.62□□□□□ -0.07
HMGB1-206ENST00000405805 MYO5CQ9NQX4 1742 aa14.62□□□□□ -0.07
HMGB1-206ENST00000405805 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.62□□□□□ -0.07
HMGB1-206ENST00000405805 COG3Q96JB2 828 aa14.62□□□□□ -0.07
HMGB1-206ENST00000405805 BLMP54132 1417 aaPredicted RBP14.62□□□□□ -0.07
HMGB1-206ENST00000405805 CDC45O75419 566 aa14.61□□□□□ -0.07
HMGB1-206ENST00000405805 MAP7D2Q96T17 732 aa14.61□□□□□ -0.07
HMGB1-206ENST00000405805 EMILIN1Q9Y6C2 1016 aa14.61□□□□□ -0.07
HMGB1-206ENST00000405805 ATP7AQ04656 1500 aa14.61□□□□□ -0.07
HMGB1-206ENST00000405805 K7ELQ4 463 aaPredicted RBP14.61□□□□□ -0.07
HMGB1-206ENST00000405805 NEK4P51957 841 aa14.61□□□□□ -0.07
HMGB1-206ENST00000405805 SKOR2Q2VWA4 1001 aaPredicted RBP14.61□□□□□ -0.07
HMGB1-206ENST00000405805 TSHZ3Q63HK5 1081 aa14.6□□□□□ -0.07
HMGB1-206ENST00000405805 GNAI1P63096 354 aa14.6□□□□□ -0.07
HMGB1-206ENST00000405805 NUTM2GQ5VZR2 741 aa14.6□□□□□ -0.07
HMGB1-206ENST00000405805 ASXL1Q8IXJ9 1541 aa14.6□□□□□ -0.07
HMGB1-206ENST00000405805 ZNF521Q96K83 1311 aa14.6□□□□□ -0.07
HMGB1-206ENST00000405805 MCCP23508 829 aa14.59□□□□□ -0.07
HMGB1-206ENST00000405805 C16orf71Q8IYS4 520 aaPredicted RBP14.59□□□□□ -0.07
HMGB1-206ENST00000405805 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.59□□□□□ -0.07
HMGB1-206ENST00000405805 CGNQ9P2M7 1197 aaKnown RBP14.59□□□□□ -0.07
HMGB1-206ENST00000405805 ZNF518AQ6AHZ1 1483 aa14.59□□□□□ -0.07
HMGB1-206ENST00000405805 AAMPQ13685 434 aa14.59□□□□□ -0.07
HMGB1-206ENST00000405805 TSPYL6Q8N831 410 aa14.59□□□□□ -0.07
HMGB1-206ENST00000405805 STK31Q9BXU1 1019 aa14.59□□□□□ -0.07
HMGB1-206ENST00000405805 ZMYM4Q5VZL5 1548 aa14.59□□□□□ -0.07
HMGB1-206ENST00000405805 TBC1D9Q6ZT07 1266 aa14.59□□□□□ -0.07
HMGB1-206ENST00000405805 CROCC2H7BZ55 1655 aa14.59□□□□□ -0.07
HMGB1-206ENST00000405805 API5Q9BZZ5 524 aaKnown RBP14.59□□□□□ -0.07
HMGB1-206ENST00000405805 SLC26A8Q96RN1 970 aa14.58□□□□□ -0.08
HMGB1-206ENST00000405805 NGDNQ8NEJ9 315 aaKnown RBP14.58□□□□□ -0.08
HMGB1-206ENST00000405805 ZCCHC11Q5TAX3 1644 aaKnown RBP14.58□□□□□ -0.08
HMGB1-206ENST00000405805 EIF2S2P20042 333 aaKnown RBP14.57□□□□□ -0.08
HMGB1-206ENST00000405805 SULT6B1Q6IMI4 303 aa14.57□□□□□ -0.08
HMGB1-206ENST00000405805 USP19O94966 1318 aa14.57□□□□□ -0.08
HMGB1-206ENST00000405805 HMMRO75330 724 aa14.57□□□□□ -0.08
HMGB1-206ENST00000405805 KRT24Q2M2I5 525 aa14.57□□□□□ -0.08
HMGB1-206ENST00000405805 ABCC1P33527 1531 aa14.57□□□□□ -0.08
HMGB1-206ENST00000405805 CBX1P83916 185 aa14.57□□□□□ -0.08
HMGB1-206ENST00000405805 FKBP5Q13451 457 aaPredicted RBP14.57□□□□□ -0.08
HMGB1-206ENST00000405805 MCM10Q7L590 875 aa14.56□□□□□ -0.08
HMGB1-206ENST00000405805 TRERF1Q96PN7 1200 aa14.56□□□□□ -0.08
HMGB1-206ENST00000405805 MAP4K4O95819 1239 aaPredicted RBP14.56□□□□□ -0.08
HMGB1-206ENST00000405805 LARP6Q9BRS8 491 aaKnown RBP14.56□□□□□ -0.08
HMGB1-206ENST00000405805 CCDC9Q9Y3X0 531 aaKnown RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms