RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 ARHGEF28Q8N1W1 1705 aaKnown RBP20.24■□□□□ 0.83
CHMP1A-201ENST00000397901 U2AF1L5P0DN76 240 aaPredicted RBP20.23■□□□□ 0.83
CHMP1A-201ENST00000397901 U2AF1Q01081 240 aaKnown RBP eCLIP20.23■□□□□ 0.83
CHMP1A-201ENST00000397901 NUTM2DQ5VT03 806 aaPredicted RBP20.23■□□□□ 0.83
CHMP1A-201ENST00000397901 RWDD1Q9H446 243 aaPredicted RBP20.22■□□□□ 0.83
CHMP1A-201ENST00000397901 TBC1D32Q96NH3 1257 aa20.22■□□□□ 0.83
CHMP1A-201ENST00000397901 AGLP35573 1532 aa20.22■□□□□ 0.83
CHMP1A-201ENST00000397901 AAMPQ13685 434 aa20.21■□□□□ 0.83
CHMP1A-201ENST00000397901 MYH16Q9H6N6 1097 aa20.21■□□□□ 0.83
CHMP1A-201ENST00000397901 CCDC27Q2M243 656 aa20.2■□□□□ 0.82
CHMP1A-201ENST00000397901 FTSJ3Q8IY81 847 aaKnown RBP20.19■□□□□ 0.82
CHMP1A-201ENST00000397901 TBC1D2Q9BYX2 928 aa20.19■□□□□ 0.82
CHMP1A-201ENST00000397901 MVPQ14764 893 aaKnown RBP20.19■□□□□ 0.82
CHMP1A-201ENST00000397901 SPRYD3Q8NCJ5 442 aa20.19■□□□□ 0.82
CHMP1A-201ENST00000397901 TSR2Q969E8 191 aaKnown RBP20.19■□□□□ 0.82
CHMP1A-201ENST00000397901 ANTXR1Q9H6X2 564 aa20.19■□□□□ 0.82
CHMP1A-201ENST00000397901 PLEKHG5O94827 1062 aa20.17■□□□□ 0.82
CHMP1A-201ENST00000397901 ZKSCAN2Q63HK3 967 aa20.17■□□□□ 0.82
CHMP1A-201ENST00000397901 TULP4Q9NRJ4 1543 aa20.17■□□□□ 0.82
CHMP1A-201ENST00000397901 TPM2P07951 284 aa20.17■□□□□ 0.82
CHMP1A-201ENST00000397901 FBXO31Q5XUX0 539 aaPredicted RBP20.17■□□□□ 0.82
CHMP1A-201ENST00000397901 DZIP1LQ8IYY4 767 aaKnown RBP20.16■□□□□ 0.82
CHMP1A-201ENST00000397901 PANK2Q9BZ23 570 aa20.16■□□□□ 0.82
CHMP1A-201ENST00000397901 PDCL3Q9H2J4 239 aa20.16■□□□□ 0.82
CHMP1A-201ENST00000397901 SAFB2Q14151 953 aaKnown RBP eCLIP20.16■□□□□ 0.82
CHMP1A-201ENST00000397901 PUS7Q96PZ0 661 aaKnown RBP20.16■□□□□ 0.82
CHMP1A-201ENST00000397901 SENP3Q9H4L4 574 aaPredicted RBP20.16■□□□□ 0.82
CHMP1A-201ENST00000397901 PPP6R1Q9UPN7 881 aa20.16■□□□□ 0.82
CHMP1A-201ENST00000397901 CABP2Q9NPB3 220 aa20.15■□□□□ 0.82
CHMP1A-201ENST00000397901 USP32Q8NFA0 1604 aa20.15■□□□□ 0.82
CHMP1A-201ENST00000397901 SMC4Q9NTJ3 1288 aa20.15■□□□□ 0.82
CHMP1A-201ENST00000397901 ARXQ96QS3 562 aa20.14■□□□□ 0.82
CHMP1A-201ENST00000397901 KIF13AQ9H1H9 1805 aa20.14■□□□□ 0.81
CHMP1A-201ENST00000397901 CLTCQ00610 1675 aaKnown RBP20.14■□□□□ 0.81
CHMP1A-201ENST00000397901 U2SURPO15042 1029 aaKnown RBP20.14■□□□□ 0.81
CHMP1A-201ENST00000397901 MRE11P49959 708 aa20.14■□□□□ 0.81
CHMP1A-201ENST00000397901 EVC2Q86UK5 1308 aa20.14■□□□□ 0.81
CHMP1A-201ENST00000397901 ZMYM3Q14202 1370 aa20.13■□□□□ 0.81
CHMP1A-201ENST00000397901 EXOSC9Q06265 439 aaKnown RBP20.13■□□□□ 0.81
CHMP1A-201ENST00000397901 ESPNB1AK53 854 aa20.13■□□□□ 0.81
CHMP1A-201ENST00000397901 ANKRD36BQ8N2N9 1353 aa20.12■□□□□ 0.81
CHMP1A-201ENST00000397901 MFAP1P55081 439 aaKnown RBP20.12■□□□□ 0.81
CHMP1A-201ENST00000397901 CALD1Q05682 793 aaKnown RBP20.11■□□□□ 0.81
CHMP1A-201ENST00000397901 ITPRIPQ8IWB1 547 aa20.11■□□□□ 0.81
CHMP1A-201ENST00000397901 TRIM27P14373 513 aa20.11■□□□□ 0.81
CHMP1A-201ENST00000397901 SPATA31D1Q6ZQQ2 1576 aa20.1■□□□□ 0.81
CHMP1A-201ENST00000397901 ARHGEF40Q8TER5 1519 aa20.1■□□□□ 0.81
CHMP1A-201ENST00000397901 SSH1Q8WYL5 1049 aa20.1■□□□□ 0.81
CHMP1A-201ENST00000397901 PTPRMP28827 1452 aa20.09■□□□□ 0.81
CHMP1A-201ENST00000397901 C22orf23Q9BZE7 217 aa20.09■□□□□ 0.81
CHMP1A-201ENST00000397901 MCM4P33991 863 aa20.09■□□□□ 0.81
CHMP1A-201ENST00000397901 GGNBP2Q9H3C7 697 aa20.09■□□□□ 0.81
CHMP1A-201ENST00000397901 ADGRB2O60241 1585 aa20.08■□□□□ 0.81
CHMP1A-201ENST00000397901 NSD2O96028 1365 aa20.08■□□□□ 0.81
CHMP1A-201ENST00000397901 TMPOP42166 694 aaKnown RBP20.08■□□□□ 0.8
CHMP1A-201ENST00000397901 ALKQ9UM73 1620 aa20.07■□□□□ 0.8
CHMP1A-201ENST00000397901 ISY1Q9ULR0 285 aaKnown RBP20.07■□□□□ 0.8
CHMP1A-201ENST00000397901 STK26Q9P289 416 aa20.07■□□□□ 0.8
CHMP1A-201ENST00000397901 TRIM35Q9UPQ4 493 aa20.07■□□□□ 0.8
CHMP1A-201ENST00000397901 YTHDC2Q9H6S0 1430 aaKnown RBP20.06■□□□□ 0.8
CHMP1A-201ENST00000397901 PLEKHF1Q96S99 279 aa20.06■□□□□ 0.8
CHMP1A-201ENST00000397901 NOB1Q9ULX3 412 aaKnown RBP20.06■□□□□ 0.8
CHMP1A-201ENST00000397901 CT47B1P0C2W7 299 aaPredicted RBP20.05■□□□□ 0.8
CHMP1A-201ENST00000397901 NCBP3Q53F19 620 aaKnown RBP20.05■□□□□ 0.8
CHMP1A-201ENST00000397901 ATF7IPQ6VMQ6 1270 aa20.05■□□□□ 0.8
CHMP1A-201ENST00000397901 GZF1Q9H116 711 aaPredicted RBP20.05■□□□□ 0.8
CHMP1A-201ENST00000397901 DDX19BQ9UMR2 479 aa20.05■□□□□ 0.8
CHMP1A-201ENST00000397901 SRPK2P78362 688 aaKnown RBP20.05■□□□□ 0.8
CHMP1A-201ENST00000397901 A0A1W2PP64 1363 aa20.05■□□□□ 0.8
CHMP1A-201ENST00000397901 A2ML1A8K2U0 1454 aa20.05■□□□□ 0.8
CHMP1A-201ENST00000397901 HDAC1Q13547 482 aaPredicted RBP20.04■□□□□ 0.8
CHMP1A-201ENST00000397901 TMEM57Q8N5G2 664 aa20.04■□□□□ 0.8
CHMP1A-201ENST00000397901 GRPEL1Q9HAV7 217 aa20.03■□□□□ 0.8
CHMP1A-201ENST00000397901 ERBB4Q15303 1308 aa20.03■□□□□ 0.8
CHMP1A-201ENST00000397901 TRAK2O60296 914 aa20.02■□□□□ 0.8
CHMP1A-201ENST00000397901 PRDM4Q9UKN5 801 aa20.02■□□□□ 0.8
CHMP1A-201ENST00000397901 RIPK4P57078 832 aa20.01■□□□□ 0.79
CHMP1A-201ENST00000397901 TRIM44Q96DX7 344 aaPredicted RBP20.01■□□□□ 0.79
CHMP1A-201ENST00000397901 STAG3Q9UJ98 1225 aa20.01■□□□□ 0.79
CHMP1A-201ENST00000397901 ABCC11Q96J66 1382 aa20.01■□□□□ 0.79
CHMP1A-201ENST00000397901 MLECQ14165 292 aa20■□□□□ 0.79
CHMP1A-201ENST00000397901 PRAM1Q96QH2 718 aa20■□□□□ 0.79
CHMP1A-201ENST00000397901 CHMP5Q9NZZ3 219 aa20■□□□□ 0.79
CHMP1A-201ENST00000397901 SETD1AO15047 1707 aaKnown RBP20■□□□□ 0.79
CHMP1A-201ENST00000397901 SMC5Q8IY18 1101 aa19.99■□□□□ 0.79
CHMP1A-201ENST00000397901 RIMS2Q9UQ26 1411 aa19.99■□□□□ 0.79
CHMP1A-201ENST00000397901 MINK1Q8N4C8 1332 aaPredicted RBP19.98■□□□□ 0.79
CHMP1A-201ENST00000397901 COL3A1P02461 1466 aaPredicted RBP19.98■□□□□ 0.79
CHMP1A-201ENST00000397901 HSCBQ8IWL3 235 aa19.98■□□□□ 0.79
CHMP1A-201ENST00000397901 ZBTB40Q9NUA8 1239 aa19.98■□□□□ 0.79
CHMP1A-201ENST00000397901 FYB1O15117 783 aa19.97■□□□□ 0.79
CHMP1A-201ENST00000397901 RBM10P98175 930 aaKnown RBP19.97■□□□□ 0.79
CHMP1A-201ENST00000397901 LNPKQ9C0E8 428 aa19.97■□□□□ 0.79
CHMP1A-201ENST00000397901 ATAD2Q6PL18 1390 aa19.97■□□□□ 0.79
CHMP1A-201ENST00000397901 DLC1Q96QB1 1528 aa19.96■□□□□ 0.79
CHMP1A-201ENST00000397901 CD163L1Q9NR16 1453 aa19.95■□□□□ 0.78
CHMP1A-201ENST00000397901 IL16Q14005 1332 aa19.95■□□□□ 0.78
CHMP1A-201ENST00000397901 KIF16BQ96L93 1317 aa19.95■□□□□ 0.78
CHMP1A-201ENST00000397901 DIAPH1O60610 1272 aaKnown RBP19.95■□□□□ 0.78
CHMP1A-201ENST00000397901 KIAA1211Q6ZU35 1233 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms