RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 MORC1Q86VD1 984 aa37.26■■■■□ 3.56
CPNE1-203ENST00000397442 ESCO1Q5FWF5 840 aa37.25■■■■□ 3.55
CPNE1-203ENST00000397442 CADPS2Q86UW7 1296 aa37.24■■■■□ 3.55
CPNE1-203ENST00000397442 TTC21BQ7Z4L5 1316 aa37.23■■■■□ 3.55
CPNE1-203ENST00000397442 ORAI2Q96SN7 254 aa37.23■■■■□ 3.55
CPNE1-203ENST00000397442 AEBP2Q6ZN18 517 aaPredicted RBP37.22■■■■□ 3.55
CPNE1-203ENST00000397442 LTBP4Q8N2S1 1624 aa37.22■■■■□ 3.55
CPNE1-203ENST00000397442 NME9Q86XW9 330 aa37.21■■■■□ 3.55
CPNE1-203ENST00000397442 KIF1AQ12756 1690 aa37.17■■■■□ 3.54
CPNE1-203ENST00000397442 ZRANB1Q9UGI0 708 aa37.15■■■■□ 3.54
CPNE1-203ENST00000397442 TNNT2P45379 298 aaPredicted RBP37.14■■■■□ 3.54
CPNE1-203ENST00000397442 TTC21AQ8NDW8 1320 aa37.14■■■■□ 3.54
CPNE1-203ENST00000397442 PNISRQ8TF01 805 aaKnown RBP37.1■■■■□ 3.53
CPNE1-203ENST00000397442 YTHDC1Q96MU7 727 aaKnown RBP37.1■■■■□ 3.53
CPNE1-203ENST00000397442 PIK3C2AO00443 1686 aa37.09■■■■□ 3.53
CPNE1-203ENST00000397442 OVOS2A0A0J9YW53 1432 aa37.08■■■■□ 3.53
CPNE1-203ENST00000397442 OVOS2Q6IE36 1432 aa37.08■■■■□ 3.53
CPNE1-203ENST00000397442 FOXO3O43524 673 aa37.08■■■■□ 3.53
CPNE1-203ENST00000397442 SCAF1Q9H7N4 1312 aaKnown RBP37.06■■■■□ 3.52
CPNE1-203ENST00000397442 PSME1Q06323 249 aa37.05■■■■□ 3.52
CPNE1-203ENST00000397442 COG3Q96JB2 828 aa37.05■■■■□ 3.52
CPNE1-203ENST00000397442 FAM9BQ8IZU0 186 aa37.04■■■■□ 3.52
CPNE1-203ENST00000397442 USP31Q70CQ4 1352 aa37.04■■■■□ 3.52
CPNE1-203ENST00000397442 SLAIN2Q9P270 581 aa37.03■■■■□ 3.52
CPNE1-203ENST00000397442 TRPM3Q9HCF6 1732 aaPredicted RBP37.02■■■■□ 3.52
CPNE1-203ENST00000397442 USP54Q70EL1 1684 aa37.02■■■■□ 3.52
CPNE1-203ENST00000397442 MTHFSP49914 203 aa37.01■■■■□ 3.52
CPNE1-203ENST00000397442 MARF1Q9Y4F3 1742 aaKnown RBP37■■■■□ 3.51
CPNE1-203ENST00000397442 XPCQ01831 940 aaPredicted RBP36.98■■■■□ 3.51
CPNE1-203ENST00000397442 BRINP3Q76B58 766 aa36.98■■■■□ 3.51
CPNE1-203ENST00000397442 AATKQ6ZMQ8 1374 aa36.97■■■■□ 3.51
CPNE1-203ENST00000397442 PAK3O75914 559 aaPredicted RBP36.97■■■■□ 3.51
CPNE1-203ENST00000397442 FBLN1P23142 703 aa36.97■■■■□ 3.51
CPNE1-203ENST00000397442 KRT28Q7Z3Y7 464 aa36.96■■■■□ 3.51
CPNE1-203ENST00000397442 MAP2P11137 1827 aaKnown RBP36.96■■■■□ 3.51
CPNE1-203ENST00000397442 ABTB2Q8N961 1025 aa36.94■■■■□ 3.5
CPNE1-203ENST00000397442 DDX17Q92841 729 aaKnown RBP36.93■■■■□ 3.5
CPNE1-203ENST00000397442 POLKQ9UBT6 870 aa36.93■■■■□ 3.5
CPNE1-203ENST00000397442 NLRP6P59044 892 aa36.92■■■■□ 3.5
CPNE1-203ENST00000397442 NPHP3Q7Z494 1330 aa36.92■■■■□ 3.5
CPNE1-203ENST00000397442 SMG6Q86US8 1419 aaKnown RBP36.91■■■■□ 3.5
CPNE1-203ENST00000397442 PXDNQ92626 1479 aa36.9■■■■□ 3.5
CPNE1-203ENST00000397442 NUTM2GQ5VZR2 741 aa36.89■■■■□ 3.5
CPNE1-203ENST00000397442 SHPRHQ149N8 1683 aa36.89■■■■□ 3.5
CPNE1-203ENST00000397442 COL3A1P02461 1466 aaPredicted RBP36.88■■■■□ 3.49
CPNE1-203ENST00000397442 ALS2Q96Q42 1657 aa36.88■■■■□ 3.49
CPNE1-203ENST00000397442 PNPLA6Q8IY17 1366 aa36.87■■■■□ 3.49
CPNE1-203ENST00000397442 SBNO1A3KN83 1393 aa36.85■■■■□ 3.49
CPNE1-203ENST00000397442 CFAP53Q96M91 514 aa36.85■■■■□ 3.49
CPNE1-203ENST00000397442 EMILIN1Q9Y6C2 1016 aa36.85■■■■□ 3.49
CPNE1-203ENST00000397442 INSRP06213 1382 aa36.84■■■■□ 3.49
CPNE1-203ENST00000397442 RRS1Q15050 365 aaKnown RBP36.83■■■■□ 3.49
CPNE1-203ENST00000397442 ADAMTS8Q9UP79 889 aa36.81■■■■□ 3.48
CPNE1-203ENST00000397442 CDK12Q9NYV4 1490 aaPredicted RBP36.81■■■■□ 3.48
CPNE1-203ENST00000397442 NHSL1Q5SYE7 1610 aa36.8■■■■□ 3.48
CPNE1-203ENST00000397442 WDR43Q15061 677 aaKnown RBP eCLIP36.8■■■■□ 3.48
CPNE1-203ENST00000397442 PEAK1Q9H792 1746 aa36.78■■■■□ 3.48
CPNE1-203ENST00000397442 SOS2Q07890 1332 aaPredicted RBP36.78■■■■□ 3.48
CPNE1-203ENST00000397442 SOX12O15370 315 aa36.77■■■■□ 3.48
CPNE1-203ENST00000397442 TNS3Q68CZ2 1445 aa36.77■■■■□ 3.48
CPNE1-203ENST00000397442 PPM1GO15355 546 aaPredicted RBP36.77■■■■□ 3.48
CPNE1-203ENST00000397442 HNRNPUQ00839 825 aaKnown RBP eCLIP36.77■■■■□ 3.48
CPNE1-203ENST00000397442 SLIT3O75094 1523 aa36.76■■■■□ 3.48
CPNE1-203ENST00000397442 BLMP54132 1417 aaPredicted RBP36.76■■■■□ 3.47
CPNE1-203ENST00000397442 NFAT5O94916 1531 aa36.75■■■■□ 3.47
CPNE1-203ENST00000397442 ROBO1Q9Y6N7 1651 aa36.75■■■■□ 3.47
CPNE1-203ENST00000397442 USP19O94966 1318 aa36.75■■■■□ 3.47
CPNE1-203ENST00000397442 SPATA31A3Q5VYP0 1347 aa36.75■■■■□ 3.47
CPNE1-203ENST00000397442 LMOD2Q6P5Q4 547 aa36.74■■■■□ 3.47
CPNE1-203ENST00000397442 MAP3K19Q56UN5 1328 aa36.73■■■■□ 3.47
CPNE1-203ENST00000397442 MED1Q15648 1581 aaPredicted RBP36.7■■■■□ 3.47
CPNE1-203ENST00000397442 DIAPH1O60610 1272 aaKnown RBP36.69■■■■□ 3.46
CPNE1-203ENST00000397442 KCNH5Q8NCM2 988 aa36.67■■■■□ 3.46
CPNE1-203ENST00000397442 IQSEC2Q5JU85 1478 aa36.66■■■■□ 3.46
CPNE1-203ENST00000397442 LTN1O94822 1766 aa36.66■■■■□ 3.46
CPNE1-203ENST00000397442 ARHGEF10O15013 1369 aa36.66■■■■□ 3.46
CPNE1-203ENST00000397442 GCP02774 474 aa36.65■■■■□ 3.46
CPNE1-203ENST00000397442 CRYBG1Q9Y4K1 1723 aa36.65■■■■□ 3.46
CPNE1-203ENST00000397442 AHDC1Q5TGY3 1603 aaPredicted RBP36.64■■■■□ 3.46
CPNE1-203ENST00000397442 FLT4P35916 1363 aa36.64■■■■□ 3.46
CPNE1-203ENST00000397442 KIF24Q5T7B8 1368 aa36.64■■■■□ 3.46
CPNE1-203ENST00000397442 NUDCQ9Y266 331 aa36.64■■■■□ 3.46
CPNE1-203ENST00000397442 IL13P35225 146 aa36.63■■■■□ 3.45
CPNE1-203ENST00000397442 PHRF1Q9P1Y6 1649 aaKnown RBP36.62■■■■□ 3.45
CPNE1-203ENST00000397442 HSP90AB2PQ58FF8 381 aa36.62■■■■□ 3.45
CPNE1-203ENST00000397442 TOM1O60784 492 aa36.61■■■■□ 3.45
CPNE1-203ENST00000397442 U2AF1L5P0DN76 240 aaPredicted RBP36.59■■■■□ 3.45
CPNE1-203ENST00000397442 AMPHP49418 695 aa36.59■■■■□ 3.45
CPNE1-203ENST00000397442 U2AF1Q01081 240 aaKnown RBP eCLIP36.59■■■■□ 3.456e-11■■□□□ 12.7
CPNE1-203ENST00000397442 U2SURPO15042 1029 aaKnown RBP36.58■■■■□ 3.45
CPNE1-203ENST00000397442 PLEKHG5O94827 1062 aa36.58■■■■□ 3.45
CPNE1-203ENST00000397442 ZBED9Q6R2W3 1325 aa36.58■■■■□ 3.45
CPNE1-203ENST00000397442 RTL1A6NKG5 1358 aa36.58■■■■□ 3.45
CPNE1-203ENST00000397442 CENPBP07199 599 aaPredicted RBP36.58■■■■□ 3.45
CPNE1-203ENST00000397442 HOXC9P31274 260 aa36.58■■■■□ 3.45
CPNE1-203ENST00000397442 SENP3-EIF4A1A0A087X0R7 540 aa36.57■■■■□ 3.44
CPNE1-203ENST00000397442 EIF4A2Q14240 407 aaKnown RBP36.57■■■■□ 3.44
CPNE1-203ENST00000397442 CCDC146Q8IYE0 955 aa36.57■■■■□ 3.44
CPNE1-203ENST00000397442 ARHGEF25Q86VW2 580 aa36.56■■■■□ 3.44
CPNE1-203ENST00000397442 CERKQ8TCT0 537 aa36.54■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms