RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 NLRP1Q9C000 1473 aa12□□□□□ -0.49
NDE1-201ENST00000396354 PPM1GO15355 546 aaPredicted RBP12□□□□□ -0.49
NDE1-201ENST00000396354 MTHFSP49914 203 aa12□□□□□ -0.49
NDE1-201ENST00000396354 WAPLQ7Z5K2 1190 aa12□□□□□ -0.49
NDE1-201ENST00000396354 IQSEC2Q5JU85 1478 aa12□□□□□ -0.49
NDE1-201ENST00000396354 U2SURPO15042 1029 aaKnown RBP11.99□□□□□ -0.49
NDE1-201ENST00000396354 SEC24BO95487 1268 aa11.98□□□□□ -0.49
NDE1-201ENST00000396354 FBLN1P23142 703 aa11.98□□□□□ -0.49
NDE1-201ENST00000396354 SRPK2P78362 688 aaKnown RBP11.98□□□□□ -0.49
NDE1-201ENST00000396354 GGNBP2Q9H3C7 697 aa11.98□□□□□ -0.49
NDE1-201ENST00000396354 FER1L4A9Z1Z3 1794 aa11.98□□□□□ -0.49
NDE1-201ENST00000396354 RIMS2Q9UQ26 1411 aa11.97□□□□□ -0.49
NDE1-201ENST00000396354 CGNL1Q0VF96 1302 aa11.97□□□□□ -0.49
NDE1-201ENST00000396354 FAM161AQ3B820 660 aa11.97□□□□□ -0.49
NDE1-201ENST00000396354 CENPQQ7L2Z9 268 aaPredicted RBP11.97□□□□□ -0.49
NDE1-201ENST00000396354 MS4A1P11836 297 aa11.97□□□□□ -0.49
NDE1-201ENST00000396354 DDRGK1Q96HY6 314 aa11.97□□□□□ -0.49
NDE1-201ENST00000396354 ABCC11Q96J66 1382 aa11.97□□□□□ -0.49
NDE1-201ENST00000396354 METP08581 1390 aa11.96□□□□□ -0.49
NDE1-201ENST00000396354 COL3A1P02461 1466 aaPredicted RBP11.96□□□□□ -0.5
NDE1-201ENST00000396354 NCKAP5LQ9HCH0 1330 aa11.96□□□□□ -0.5
NDE1-201ENST00000396354 U2AF1L5P0DN76 240 aaPredicted RBP11.96□□□□□ -0.5
NDE1-201ENST00000396354 U2AF1Q01081 240 aaKnown RBP eCLIP11.96□□□□□ -0.5
NDE1-201ENST00000396354 C8orf34Q49A92 452 aa11.96□□□□□ -0.5
NDE1-201ENST00000396354 WWC1Q8IX03 1113 aa11.96□□□□□ -0.5
NDE1-201ENST00000396354 GZF1Q9H116 711 aaPredicted RBP11.96□□□□□ -0.5
NDE1-201ENST00000396354 STAG3Q9UJ98 1225 aa11.95□□□□□ -0.5
NDE1-201ENST00000396354 CDK19Q9BWU1 502 aa11.95□□□□□ -0.5
NDE1-201ENST00000396354 RIMS1Q86UR5 1692 aaKnown RBP11.94□□□□□ -0.5
NDE1-201ENST00000396354 FYB1O15117 783 aa11.94□□□□□ -0.5
NDE1-201ENST00000396354 TSR2Q969E8 191 aaKnown RBP11.94□□□□□ -0.5
NDE1-201ENST00000396354 POGKQ9P215 609 aa11.94□□□□□ -0.5
NDE1-201ENST00000396354 CABP1Q9NZU7 370 aa11.94□□□□□ -0.5
NDE1-201ENST00000396354 NKTRP30414 1462 aaKnown RBP11.94□□□□□ -0.5
NDE1-201ENST00000396354 C3P01024 1663 aa11.93□□□□□ -0.5
NDE1-201ENST00000396354 TCP11L2Q8N4U5 519 aa11.93□□□□□ -0.5
NDE1-201ENST00000396354 ANKRD26Q9UPS8 1709 aa11.93□□□□□ -0.5
NDE1-201ENST00000396354 GSE1Q14687 1217 aa11.93□□□□□ -0.5
NDE1-201ENST00000396354 PUS7Q96PZ0 661 aaKnown RBP11.93□□□□□ -0.5
NDE1-201ENST00000396354 U3KPZ7 1027 aaPredicted RBP11.92□□□□□ -0.5
NDE1-201ENST00000396354 TNRQ92752 1358 aa11.92□□□□□ -0.5
NDE1-201ENST00000396354 RLBP1P12271 317 aa11.92□□□□□ -0.5
NDE1-201ENST00000396354 ADGRB2O60241 1585 aa11.91□□□□□ -0.5
NDE1-201ENST00000396354 ADAMTSL3P82987 1691 aa11.91□□□□□ -0.5
NDE1-201ENST00000396354 ZRANB1Q9UGI0 708 aa11.91□□□□□ -0.5
NDE1-201ENST00000396354 KDM2BQ8NHM5 1336 aa11.91□□□□□ -0.5
NDE1-201ENST00000396354 KIF20BQ96Q89 1820 aa11.91□□□□□ -0.5
NDE1-201ENST00000396354 UBR1Q8IWV7 1749 aa11.9□□□□□ -0.5
NDE1-201ENST00000396354 TXNDC2Q86VQ3 553 aa11.9□□□□□ -0.5
NDE1-201ENST00000396354 FTSJ3Q8IY81 847 aaKnown RBP11.9□□□□□ -0.5
NDE1-201ENST00000396354 ELL2O00472 640 aaPredicted RBP11.9□□□□□ -0.5
NDE1-201ENST00000396354 RUNDC1Q96C34 613 aa11.9□□□□□ -0.5
NDE1-201ENST00000396354 DLC1Q96QB1 1528 aa11.9□□□□□ -0.5
NDE1-201ENST00000396354 NSD2O96028 1365 aa11.9□□□□□ -0.51
NDE1-201ENST00000396354 ATAD2Q6PL18 1390 aa11.9□□□□□ -0.51
NDE1-201ENST00000396354 E9PSI1 815 aa11.89□□□□□ -0.51
NDE1-201ENST00000396354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.89□□□□□ -0.51
NDE1-201ENST00000396354 MFAP1P55081 439 aaKnown RBP11.89□□□□□ -0.51
NDE1-201ENST00000396354 PLEKHF1Q96S99 279 aa11.88□□□□□ -0.51
NDE1-201ENST00000396354 PCDHB15Q9Y5E8 787 aa11.88□□□□□ -0.51
NDE1-201ENST00000396354 ITPRIPQ8IWB1 547 aa11.87□□□□□ -0.51
NDE1-201ENST00000396354 NINLQ9Y2I6 1382 aa11.87□□□□□ -0.51
NDE1-201ENST00000396354 CPS1P31327 1500 aa11.87□□□□□ -0.51
NDE1-201ENST00000396354 DCAF8L1A6NGE4 600 aa11.86□□□□□ -0.51
NDE1-201ENST00000396354 LTKP29376 864 aa11.86□□□□□ -0.51
NDE1-201ENST00000396354 ROBO2Q9HCK4 1378 aa11.86□□□□□ -0.51
NDE1-201ENST00000396354 PRR36Q9H6K5 1346 aa11.86□□□□□ -0.51
NDE1-201ENST00000396354 ADAMTS13Q76LX8 1427 aa11.86□□□□□ -0.51
NDE1-201ENST00000396354 SMC4Q9NTJ3 1288 aa11.86□□□□□ -0.51
NDE1-201ENST00000396354 MED14O60244 1454 aa11.86□□□□□ -0.51
NDE1-201ENST00000396354 TRIM35Q9UPQ4 493 aa11.85□□□□□ -0.51
NDE1-201ENST00000396354 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.85□□□□□ -0.51
NDE1-201ENST00000396354 NME9Q86XW9 330 aa11.85□□□□□ -0.51
NDE1-201ENST00000396354 TERF2IPQ9NYB0 399 aa11.85□□□□□ -0.51
NDE1-201ENST00000396354 MAP2P11137 1827 aaKnown RBP11.85□□□□□ -0.51
NDE1-201ENST00000396354 UPF2Q9HAU5 1272 aaKnown RBP11.84□□□□□ -0.51
NDE1-201ENST00000396354 PDZRN3Q9UPQ7 1066 aa11.84□□□□□ -0.51
NDE1-201ENST00000396354 KNDC1Q76NI1 1749 aa11.84□□□□□ -0.51
NDE1-201ENST00000396354 LRRC7Q96NW7 1537 aa11.84□□□□□ -0.51
NDE1-201ENST00000396354 PPIP5K1Q6PFW1 1433 aa11.84□□□□□ -0.51
NDE1-201ENST00000396354 PNPLA6Q8IY17 1366 aa11.84□□□□□ -0.51
NDE1-201ENST00000396354 TMEM2Q9UHN6 1383 aa11.84□□□□□ -0.51
NDE1-201ENST00000396354 SOX12O15370 315 aa11.84□□□□□ -0.51
NDE1-201ENST00000396354 CPSF1Q10570 1443 aaKnown RBP11.84□□□□□ -0.51
NDE1-201ENST00000396354 RARSP54136 660 aaKnown RBP11.84□□□□□ -0.51
NDE1-201ENST00000396354 CFAP53Q96M91 514 aa11.84□□□□□ -0.51
NDE1-201ENST00000396354 WASLO00401 505 aaPredicted RBP11.83□□□□□ -0.52
NDE1-201ENST00000396354 USP35Q9P2H5 1018 aa11.83□□□□□ -0.52
NDE1-201ENST00000396354 POLKQ9UBT6 870 aa11.83□□□□□ -0.52
NDE1-201ENST00000396354 EMILIN1Q9Y6C2 1016 aa11.83□□□□□ -0.52
NDE1-201ENST00000396354 PTPRUQ92729 1446 aa11.83□□□□□ -0.52
NDE1-201ENST00000396354 THUMPD2Q9BTF0 503 aaKnown RBP11.83□□□□□ -0.52
NDE1-201ENST00000396354 C1orf115Q9H7X2 142 aa11.83□□□□□ -0.52
NDE1-201ENST00000396354 ATP7BP35670 1465 aa11.83□□□□□ -0.52
NDE1-201ENST00000396354 TECPR2O15040 1411 aa11.82□□□□□ -0.52
NDE1-201ENST00000396354 KDM4FA0A1W2PPD8 638 aa11.82□□□□□ -0.52
NDE1-201ENST00000396354 NUTM2FA1L443 756 aa11.82□□□□□ -0.52
NDE1-201ENST00000396354 APBB1O00213 710 aa11.82□□□□□ -0.52
NDE1-201ENST00000396354 EXOSC9Q06265 439 aaKnown RBP11.82□□□□□ -0.52
NDE1-201ENST00000396354 MON2Q7Z3U7 1717 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms