RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ITPRIPQ8IWB1 547 aa16.12■□□□□ 0.17
SHMT1-205ENST00000395684 NOB1Q9ULX3 412 aaKnown RBP16.12■□□□□ 0.17
SHMT1-205ENST00000395684 FYB1O15117 783 aa16.12■□□□□ 0.17
SHMT1-205ENST00000395684 IDI1Q13907 227 aa16.12■□□□□ 0.17
SHMT1-205ENST00000395684 SPRYD3Q8NCJ5 442 aa16.12■□□□□ 0.17
SHMT1-205ENST00000395684 CAMSAP1Q5T5Y3 1602 aa16.11■□□□□ 0.17
SHMT1-205ENST00000395684 DDX19BQ9UMR2 479 aa16.11■□□□□ 0.17
SHMT1-205ENST00000395684 COL3A1P02461 1466 aaPredicted RBP16.11■□□□□ 0.17
SHMT1-205ENST00000395684 C22orf23Q9BZE7 217 aa16.11■□□□□ 0.17
SHMT1-205ENST00000395684 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.11■□□□□ 0.17
SHMT1-205ENST00000395684 PIK3C2BO00750 1634 aa16.1■□□□□ 0.17
SHMT1-205ENST00000395684 RAPGEF3O95398 923 aa16.1■□□□□ 0.17
SHMT1-205ENST00000395684 MFAP1P55081 439 aaKnown RBP16.1■□□□□ 0.17
SHMT1-205ENST00000395684 TMEM57Q8N5G2 664 aa16.1■□□□□ 0.17
SHMT1-205ENST00000395684 NPM1P06748 294 aaKnown RBP eCLIP16.09■□□□□ 0.17
SHMT1-205ENST00000395684 RIPK4P57078 832 aa16.09■□□□□ 0.17
SHMT1-205ENST00000395684 SMC5Q8IY18 1101 aa16.09■□□□□ 0.17
SHMT1-205ENST00000395684 ZBTB40Q9NUA8 1239 aa16.08■□□□□ 0.16
SHMT1-205ENST00000395684 IL16Q14005 1332 aa16.08■□□□□ 0.16
SHMT1-205ENST00000395684 MINK1Q8N4C8 1332 aaPredicted RBP16.07■□□□□ 0.16
SHMT1-205ENST00000395684 CD163L1Q9NR16 1453 aa16.06■□□□□ 0.16
SHMT1-205ENST00000395684 TERF2IPQ9NYB0 399 aa16.06■□□□□ 0.16
SHMT1-205ENST00000395684 DIAPH1O60610 1272 aaKnown RBP16.05■□□□□ 0.16
SHMT1-205ENST00000395684 PRAM1Q96QH2 718 aa16.05■□□□□ 0.16
SHMT1-205ENST00000395684 FAM43AQ8N2R8 423 aa16.05■□□□□ 0.16
SHMT1-205ENST00000395684 ZFYVE9O95405 1425 aa16.05■□□□□ 0.16
SHMT1-205ENST00000395684 PTPRMP28827 1452 aa16.04■□□□□ 0.16
SHMT1-205ENST00000395684 MCM4P33991 863 aa16.04■□□□□ 0.16
SHMT1-205ENST00000395684 CFAP74Q9C0B2 1584 aa16.04■□□□□ 0.16
SHMT1-205ENST00000395684 ATAD2Q6PL18 1390 aa16.04■□□□□ 0.16
SHMT1-205ENST00000395684 PNPLA6Q8IY17 1366 aa16.04■□□□□ 0.16
SHMT1-205ENST00000395684 ARHGAP31Q2M1Z3 1444 aa16.03■□□□□ 0.16
SHMT1-205ENST00000395684 SLC52A1Q9NWF4 448 aa16.03■□□□□ 0.16
SHMT1-205ENST00000395684 MED14O60244 1454 aa16.03■□□□□ 0.16
SHMT1-205ENST00000395684 KIF16BQ96L93 1317 aa16.03■□□□□ 0.16
SHMT1-205ENST00000395684 RIMBP3CA6NJZ7 1639 aa16.02■□□□□ 0.16
SHMT1-205ENST00000395684 RIMBP3BA6NNM3 1639 aa16.02■□□□□ 0.16
SHMT1-205ENST00000395684 RIMBP3Q9UFD9 1639 aa16.02■□□□□ 0.16
SHMT1-205ENST00000395684 IPO8O15397 1037 aaKnown RBP16.02■□□□□ 0.16
SHMT1-205ENST00000395684 NUCB1Q02818 461 aa16.02■□□□□ 0.16
SHMT1-205ENST00000395684 CHMP5Q9NZZ3 219 aa16.02■□□□□ 0.16
SHMT1-205ENST00000395684 FBLN1P23142 703 aa16.02■□□□□ 0.15
SHMT1-205ENST00000395684 L1TD1Q5T7N2 865 aaKnown RBP16.02■□□□□ 0.15
SHMT1-205ENST00000395684 LNPKQ9C0E8 428 aa16.01■□□□□ 0.15
SHMT1-205ENST00000395684 CABP1Q9NZU7 370 aa16.01■□□□□ 0.15
SHMT1-205ENST00000395684 ALDH1L2Q3SY69 923 aa16.01■□□□□ 0.15
SHMT1-205ENST00000395684 FCHSD2O94868 740 aa16■□□□□ 0.15
SHMT1-205ENST00000395684 CDK19Q9BWU1 502 aa16■□□□□ 0.15
SHMT1-205ENST00000395684 YTHDC2Q9H6S0 1430 aaKnown RBP16■□□□□ 0.15
SHMT1-205ENST00000395684 ZNF692Q9BU19 519 aaPredicted RBP16■□□□□ 0.15
SHMT1-205ENST00000395684 PNNQ9H307 717 aaKnown RBP16■□□□□ 0.15
SHMT1-205ENST00000395684 HDGFL2Q7Z4V5 671 aaPredicted RBP15.99■□□□□ 0.15
SHMT1-205ENST00000395684 GZF1Q9H116 711 aaPredicted RBP15.99■□□□□ 0.15
SHMT1-205ENST00000395684 DIP2CQ9Y2E4 1556 aa15.99■□□□□ 0.15
SHMT1-205ENST00000395684 PRKAR2BP31323 418 aa15.99■□□□□ 0.15
SHMT1-205ENST00000395684 CHD1LQ86WJ1 897 aa15.99■□□□□ 0.15
SHMT1-205ENST00000395684 ARXQ96QS3 562 aa15.99■□□□□ 0.15
SHMT1-205ENST00000395684 RSPH6AQ9H0K4 717 aa15.99■□□□□ 0.15
SHMT1-205ENST00000395684 ANKRD26Q9UPS8 1709 aa15.98■□□□□ 0.15
SHMT1-205ENST00000395684 FSD2A1L4K1 749 aa15.98■□□□□ 0.15
SHMT1-205ENST00000395684 XRCC6P12956 609 aaKnown RBP eCLIP15.98■□□□□ 0.15
SHMT1-205ENST00000395684 RBM25P49756 843 aaKnown RBP15.98■□□□□ 0.15
SHMT1-205ENST00000395684 HSCBQ8IWL3 235 aa15.98■□□□□ 0.15
SHMT1-205ENST00000395684 PHACTR3Q96KR7 559 aa15.97■□□□□ 0.15
SHMT1-205ENST00000395684 POLKQ9UBT6 870 aa15.97■□□□□ 0.15
SHMT1-205ENST00000395684 ZBTB7BO15156 539 aaPredicted RBP15.97■□□□□ 0.15
SHMT1-205ENST00000395684 BRPF1P55201 1214 aaPredicted RBP15.97■□□□□ 0.15
SHMT1-205ENST00000395684 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.97■□□□□ 0.15
SHMT1-205ENST00000395684 MYO5BQ9ULV0 1848 aa15.97■□□□□ 0.15
SHMT1-205ENST00000395684 TRAK2O60296 914 aa15.96■□□□□ 0.15
SHMT1-205ENST00000395684 THUMPD2Q9BTF0 503 aaKnown RBP15.96■□□□□ 0.15
SHMT1-205ENST00000395684 LRRC7Q96NW7 1537 aa15.96■□□□□ 0.15
SHMT1-205ENST00000395684 GOLGA6L3A6NEY3 463 aa15.96■□□□□ 0.15
SHMT1-205ENST00000395684 DDIT3P35638 169 aa15.96■□□□□ 0.15
SHMT1-205ENST00000395684 RRAGDQ9NQL2 400 aaPredicted RBP15.96■□□□□ 0.15
SHMT1-205ENST00000395684 TMEM131LA2VDJ0 1609 aa15.96■□□□□ 0.15
SHMT1-205ENST00000395684 NEO1Q92859 1461 aa15.96■□□□□ 0.15
SHMT1-205ENST00000395684 CLTCQ00610 1675 aaKnown RBP15.96■□□□□ 0.14
SHMT1-205ENST00000395684 ARHGEF40Q8TER5 1519 aa15.96■□□□□ 0.14
SHMT1-205ENST00000395684 VAMP4O75379 141 aa15.95■□□□□ 0.14
SHMT1-205ENST00000395684 FAM135BQ49AJ0 1406 aa15.95■□□□□ 0.14
SHMT1-205ENST00000395684 FBXO31Q5XUX0 539 aaPredicted RBP15.95■□□□□ 0.14
SHMT1-205ENST00000395684 TSPYL6Q8N831 410 aa15.95■□□□□ 0.14
SHMT1-205ENST00000395684 PPIP5K1Q6PFW1 1433 aa15.95■□□□□ 0.14
SHMT1-205ENST00000395684 NCOA3Q9Y6Q9 1424 aa15.95■□□□□ 0.14
SHMT1-205ENST00000395684 HMOX1P09601 288 aa15.94■□□□□ 0.14
SHMT1-205ENST00000395684 C1orf115Q9H7X2 142 aa15.94■□□□□ 0.14
SHMT1-205ENST00000395684 YEATS2Q9ULM3 1422 aa15.94■□□□□ 0.14
SHMT1-205ENST00000395684 BMP2KLQ5H9B9 411 aa15.94■□□□□ 0.14
SHMT1-205ENST00000395684 ANKRD45Q5TZF3 282 aa15.94■□□□□ 0.14
SHMT1-205ENST00000395684 MRPL50Q8N5N7 158 aaKnown RBP15.94■□□□□ 0.14
SHMT1-205ENST00000395684 SNX21Q969T3 373 aa15.94■□□□□ 0.14
SHMT1-205ENST00000395684 ZNF428Q96B54 188 aa15.94■□□□□ 0.14
SHMT1-205ENST00000395684 PANK2Q9BZ23 570 aa15.93■□□□□ 0.14
SHMT1-205ENST00000395684 CDC42BPGQ6DT37 1551 aa15.93■□□□□ 0.14
SHMT1-205ENST00000395684 NFE2L2Q16236 605 aa15.93■□□□□ 0.14
SHMT1-205ENST00000395684 KIF2CQ99661 725 aa15.93■□□□□ 0.14
SHMT1-205ENST00000395684 ELL2O00472 640 aaPredicted RBP15.92■□□□□ 0.14
SHMT1-205ENST00000395684 SIRT2Q8IXJ6 389 aa15.92■□□□□ 0.14
SHMT1-205ENST00000395684 WAPLQ7Z5K2 1190 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms