RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 NLRP13Q86W25 1043 aa20.42■□□□□ 0.86
SCAF11-204ENST00000395454 ZBED9Q6R2W3 1325 aa20.41■□□□□ 0.86
SCAF11-204ENST00000395454 XPCQ01831 940 aaPredicted RBP20.41■□□□□ 0.86
SCAF11-204ENST00000395454 ZNF692Q9BU19 519 aaPredicted RBP20.41■□□□□ 0.86
SCAF11-204ENST00000395454 CPSF1Q10570 1443 aaKnown RBP20.41■□□□□ 0.86
SCAF11-204ENST00000395454 AKAP12Q02952 1782 aa20.41■□□□□ 0.86
SCAF11-204ENST00000395454 INSRP06213 1382 aa20.4■□□□□ 0.86
SCAF11-204ENST00000395454 NPHP3Q7Z494 1330 aa20.4■□□□□ 0.86
SCAF11-204ENST00000395454 AMER1Q5JTC6 1135 aaPredicted RBP20.39■□□□□ 0.86
SCAF11-204ENST00000395454 FAM9BQ8IZU0 186 aa20.39■□□□□ 0.85
SCAF11-204ENST00000395454 USP6P35125 1406 aa20.38■□□□□ 0.85
SCAF11-204ENST00000395454 CARD14Q9BXL6 1004 aa20.37■□□□□ 0.85
SCAF11-204ENST00000395454 MON2Q7Z3U7 1717 aa20.37■□□□□ 0.85
SCAF11-204ENST00000395454 NSD3Q9BZ95 1437 aa20.37■□□□□ 0.85
SCAF11-204ENST00000395454 PAK3O75914 559 aaPredicted RBP20.37■□□□□ 0.85
SCAF11-204ENST00000395454 KRT28Q7Z3Y7 464 aa20.37■□□□□ 0.85
SCAF11-204ENST00000395454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.35■□□□□ 0.856e-6■■□□□ 14.4
SCAF11-204ENST00000395454 KNSTRNQ9Y448 316 aa20.35■□□□□ 0.85
SCAF11-204ENST00000395454 NHSL1Q5SYE7 1610 aa20.35■□□□□ 0.85
SCAF11-204ENST00000395454 EDC4Q6P2E9 1401 aaKnown RBP20.34■□□□□ 0.85
SCAF11-204ENST00000395454 PXDNQ92626 1479 aa20.32■□□□□ 0.84
SCAF11-204ENST00000395454 NRKQ7Z2Y5 1582 aa20.32■□□□□ 0.84
SCAF11-204ENST00000395454 SOS2Q07890 1332 aaPredicted RBP20.32■□□□□ 0.84
SCAF11-204ENST00000395454 TTC21BQ7Z4L5 1316 aa20.32■□□□□ 0.84
SCAF11-204ENST00000395454 AHDC1Q5TGY3 1603 aaPredicted RBP20.31■□□□□ 0.84
SCAF11-204ENST00000395454 SSH2Q76I76 1423 aa20.31■□□□□ 0.84
SCAF11-204ENST00000395454 CNGB1Q14028 1251 aaPredicted RBP20.31■□□□□ 0.84
SCAF11-204ENST00000395454 CC2D1BQ5T0F9 858 aaKnown RBP20.31■□□□□ 0.84
SCAF11-204ENST00000395454 LMOD2Q6P5Q4 547 aa20.31■□□□□ 0.84
SCAF11-204ENST00000395454 PHLPP1O60346 1717 aa20.3■□□□□ 0.84
SCAF11-204ENST00000395454 CGNL1Q0VF96 1302 aa20.3■□□□□ 0.84
SCAF11-204ENST00000395454 TRPM3Q9HCF6 1732 aaPredicted RBP20.3■□□□□ 0.84
SCAF11-204ENST00000395454 ABTB2Q8N961 1025 aa20.29■□□□□ 0.84
SCAF11-204ENST00000395454 TTC21AQ8NDW8 1320 aa20.29■□□□□ 0.84
SCAF11-204ENST00000395454 NME9Q86XW9 330 aa20.28■□□□□ 0.84
SCAF11-204ENST00000395454 SBNO1A3KN83 1393 aa20.28■□□□□ 0.84
SCAF11-204ENST00000395454 NUTM2GQ5VZR2 741 aa20.27■□□□□ 0.84
SCAF11-204ENST00000395454 BLMP54132 1417 aaPredicted RBP20.27■□□□□ 0.84
SCAF11-204ENST00000395454 TNS3Q68CZ2 1445 aa20.27■□□□□ 0.84
SCAF11-204ENST00000395454 SPATA31A3Q5VYP0 1347 aa20.26■□□□□ 0.83
SCAF11-204ENST00000395454 FYB1O15117 783 aa20.26■□□□□ 0.83
SCAF11-204ENST00000395454 GGNBP2Q9H3C7 697 aa20.26■□□□□ 0.83
SCAF11-204ENST00000395454 LRRC59Q96AG4 307 aaKnown RBP20.25■□□□□ 0.83
SCAF11-204ENST00000395454 KIF20BQ96Q89 1820 aa20.25■□□□□ 0.83
SCAF11-204ENST00000395454 PLEKHG5O94827 1062 aa20.25■□□□□ 0.83
SCAF11-204ENST00000395454 PPP2R1AP30153 589 aa20.25■□□□□ 0.83
SCAF11-204ENST00000395454 SUPT16HQ9Y5B9 1047 aaKnown RBP20.25■□□□□ 0.83
SCAF11-204ENST00000395454 PIK3C2AO00443 1686 aa20.25■□□□□ 0.83
SCAF11-204ENST00000395454 COL16A1Q07092 1604 aaPredicted RBP20.25■□□□□ 0.83
SCAF11-204ENST00000395454 NLRP6P59044 892 aa20.24■□□□□ 0.83
SCAF11-204ENST00000395454 ZRANB1Q9UGI0 708 aa20.24■□□□□ 0.83
SCAF11-204ENST00000395454 ALS2Q96Q42 1657 aa20.24■□□□□ 0.83
SCAF11-204ENST00000395454 HSPA1LP34931 641 aa20.23■□□□□ 0.83
SCAF11-204ENST00000395454 ARHGEF10O15013 1369 aa20.22■□□□□ 0.83
SCAF11-204ENST00000395454 FBXO41Q8TF61 875 aa20.21■□□□□ 0.83
SCAF11-204ENST00000395454 COG3Q96JB2 828 aa20.21■□□□□ 0.83
SCAF11-204ENST00000395454 SMG6Q86US8 1419 aaKnown RBP20.21■□□□□ 0.83
SCAF11-204ENST00000395454 NSD2O96028 1365 aa20.21■□□□□ 0.83
SCAF11-204ENST00000395454 SOX12O15370 315 aa20.18■□□□□ 0.82
SCAF11-204ENST00000395454 OVOS2A0A0J9YW53 1432 aa20.18■□□□□ 0.82
SCAF11-204ENST00000395454 OVOS2Q6IE36 1432 aa20.18■□□□□ 0.82
SCAF11-204ENST00000395454 USP31Q70CQ4 1352 aa20.18■□□□□ 0.82
SCAF11-204ENST00000395454 TNNT2P45379 298 aaPredicted RBP20.17■□□□□ 0.82
SCAF11-204ENST00000395454 MORC1Q86VD1 984 aa20.17■□□□□ 0.82
SCAF11-204ENST00000395454 ANKRD26Q9UPS8 1709 aa20.17■□□□□ 0.82
SCAF11-204ENST00000395454 CABLES1Q8TDN4 633 aa20.17■□□□□ 0.82
SCAF11-204ENST00000395454 PNPLA6Q8IY17 1366 aa20.16■□□□□ 0.82
SCAF11-204ENST00000395454 MARF1Q9Y4F3 1742 aaKnown RBP20.15■□□□□ 0.82
SCAF11-204ENST00000395454 HAP1P54257 671 aaPredicted RBP20.14■□□□□ 0.81
SCAF11-204ENST00000395454 USP54Q70EL1 1684 aa20.14■□□□□ 0.81
SCAF11-204ENST00000395454 JCADQ9P266 1359 aa20.14■□□□□ 0.81
SCAF11-204ENST00000395454 MED1Q15648 1581 aaPredicted RBP20.13■□□□□ 0.81
SCAF11-204ENST00000395454 USP19O94966 1318 aa20.13■□□□□ 0.81
SCAF11-204ENST00000395454 GCP02774 474 aa20.12■□□□□ 0.81
SCAF11-204ENST00000395454 FBLN1P23142 703 aa20.12■□□□□ 0.81
SCAF11-204ENST00000395454 KCNH5Q8NCM2 988 aa20.12■□□□□ 0.81
SCAF11-204ENST00000395454 COL22A1Q8NFW1 1626 aaPredicted RBP20.11■□□□□ 0.81
SCAF11-204ENST00000395454 SHPRHQ149N8 1683 aa20.11■□□□□ 0.81
SCAF11-204ENST00000395454 NEFLP07196 543 aa20.11■□□□□ 0.81
SCAF11-204ENST00000395454 NUDCQ9Y266 331 aa20.11■□□□□ 0.81
SCAF11-204ENST00000395454 SLIT3O75094 1523 aa20.1■□□□□ 0.81
SCAF11-204ENST00000395454 PHRF1Q9P1Y6 1649 aaKnown RBP20.1■□□□□ 0.81
SCAF11-204ENST00000395454 CRYBG1Q9Y4K1 1723 aa20.1■□□□□ 0.81
SCAF11-204ENST00000395454 ABCA3Q99758 1704 aa20.09■□□□□ 0.81
SCAF11-204ENST00000395454 NUTM2BA6NNL0 878 aaPredicted RBP20.08■□□□□ 0.81
SCAF11-204ENST00000395454 NUTM2EB1AL46 878 aaPredicted RBP20.08■□□□□ 0.81
SCAF11-204ENST00000395454 ZC3H6P61129 1189 aaKnown RBP20.08■□□□□ 0.81
SCAF11-204ENST00000395454 PDE3BQ13370 1112 aa20.08■□□□□ 0.81
SCAF11-204ENST00000395454 FKBP8Q14318 412 aa20.08■□□□□ 0.81
SCAF11-204ENST00000395454 RRS1Q15050 365 aaKnown RBP20.08■□□□□ 0.81
SCAF11-204ENST00000395454 NUTM2AQ8IVF1 878 aaPredicted RBP20.08■□□□□ 0.81
SCAF11-204ENST00000395454 ZBTB7CA1YPR0 619 aa20.07■□□□□ 0.8
SCAF11-204ENST00000395454 MAP2P11137 1827 aaKnown RBP20.07■□□□□ 0.8
SCAF11-204ENST00000395454 NFAT5O94916 1531 aa20.07■□□□□ 0.8
SCAF11-204ENST00000395454 ADAMTS8Q9UP79 889 aa20.06■□□□□ 0.8
SCAF11-204ENST00000395454 RNF123Q5XPI4 1314 aa20.06■□□□□ 0.8
SCAF11-204ENST00000395454 PPM1GO15355 546 aaPredicted RBP20.06■□□□□ 0.8
SCAF11-204ENST00000395454 AATKQ6ZMQ8 1374 aa20.05■□□□□ 0.8
SCAF11-204ENST00000395454 ERICH6BQ5W0A0 696 aa20.05■□□□□ 0.8
SCAF11-204ENST00000395454 SPATA31A6Q5VVP1 1343 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms