RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 PAK3O75914 559 aaPredicted RBP23.96■■□□□ 1.43
HMGN4-201ENST00000377575 SLIT2O94813 1529 aa23.95■■□□□ 1.43
HMGN4-201ENST00000377575 ACEP12821 1306 aa23.95■■□□□ 1.42
HMGN4-201ENST00000377575 PLEKHG3A1L390 1219 aa23.95■■□□□ 1.42
HMGN4-201ENST00000377575 CABLES1Q8TDN4 633 aa23.95■■□□□ 1.42
HMGN4-201ENST00000377575 CABP2Q9NPB3 220 aa23.95■■□□□ 1.42
HMGN4-201ENST00000377575 RGS12O14924 1447 aa23.94■■□□□ 1.42
HMGN4-201ENST00000377575 PLEKHG5O94827 1062 aa23.94■■□□□ 1.42
HMGN4-201ENST00000377575 CARD11Q9BXL7 1154 aa23.94■■□□□ 1.42
HMGN4-201ENST00000377575 PHRF1Q9P1Y6 1649 aaKnown RBP23.94■■□□□ 1.42
HMGN4-201ENST00000377575 COL14A1Q05707 1796 aaKnown RBP23.92■■□□□ 1.42
HMGN4-201ENST00000377575 SBNO2Q9Y2G9 1366 aa23.91■■□□□ 1.42
HMGN4-201ENST00000377575 UNC5CLQ8IV45 518 aa23.89■■□□□ 1.41
HMGN4-201ENST00000377575 NRAPQ86VF7 1730 aa23.89■■□□□ 1.41
HMGN4-201ENST00000377575 AKAP12Q02952 1782 aa23.88■■□□□ 1.41
HMGN4-201ENST00000377575 CLSPNQ9HAW4 1339 aa23.88■■□□□ 1.41
HMGN4-201ENST00000377575 PCGF6Q9BYE7 350 aa23.88■■□□□ 1.41
HMGN4-201ENST00000377575 BRD4O60885 1362 aaPredicted RBP23.88■■□□□ 1.41
HMGN4-201ENST00000377575 ATAD2Q6PL18 1390 aa23.87■■□□□ 1.41
HMGN4-201ENST00000377575 GLI3P10071 1580 aa23.85■■□□□ 1.41
HMGN4-201ENST00000377575 USP6P35125 1406 aa23.84■■□□□ 1.41
HMGN4-201ENST00000377575 NRKQ7Z2Y5 1582 aa23.84■■□□□ 1.41
HMGN4-201ENST00000377575 CABP1Q9NZU7 370 aa23.84■■□□□ 1.41
HMGN4-201ENST00000377575 GJD4Q96KN9 370 aaPredicted RBP23.83■■□□□ 1.41
HMGN4-201ENST00000377575 ABTB2Q8N961 1025 aa23.82■■□□□ 1.4
HMGN4-201ENST00000377575 FAM83GA6ND36 823 aa23.81■■□□□ 1.4
HMGN4-201ENST00000377575 NUTM2GQ5VZR2 741 aa23.8■■□□□ 1.4
HMGN4-201ENST00000377575 PIK3C2AO00443 1686 aa23.79■■□□□ 1.4
HMGN4-201ENST00000377575 MON2Q7Z3U7 1717 aa23.79■■□□□ 1.4
HMGN4-201ENST00000377575 VPS72Q15906 364 aa23.79■■□□□ 1.4
HMGN4-201ENST00000377575 PRDM11Q9NQV5 511 aa23.79■■□□□ 1.4
HMGN4-201ENST00000377575 TIMELESSQ9UNS1 1208 aa23.78■■□□□ 1.4
HMGN4-201ENST00000377575 BTG4Q9NY30 223 aa23.77■■□□□ 1.4
HMGN4-201ENST00000377575 USP19O94966 1318 aa23.77■■□□□ 1.4
HMGN4-201ENST00000377575 KIAA0232Q92628 1395 aa23.77■■□□□ 1.4
HMGN4-201ENST00000377575 NLRP13Q86W25 1043 aa23.76■■□□□ 1.39
HMGN4-201ENST00000377575 UPF1Q92900 1129 aaKnown RBP eCLIP23.76■■□□□ 1.392e-6■■□□□ 11.6
HMGN4-201ENST00000377575 CCDC9Q9Y3X0 531 aaKnown RBP23.76■■□□□ 1.39
HMGN4-201ENST00000377575 SSH2Q76I76 1423 aa23.76■■□□□ 1.39
HMGN4-201ENST00000377575 ZNF692Q9BU19 519 aaPredicted RBP23.75■■□□□ 1.39
HMGN4-201ENST00000377575 BRWD3Q6RI45 1802 aa23.75■■□□□ 1.39
HMGN4-201ENST00000377575 CPSF1Q10570 1443 aaKnown RBP23.74■■□□□ 1.39
HMGN4-201ENST00000377575 SLIT3O75094 1523 aa23.74■■□□□ 1.39
HMGN4-201ENST00000377575 SLC24A1O60721 1099 aa23.73■■□□□ 1.39
HMGN4-201ENST00000377575 CPDO75976 1380 aa23.72■■□□□ 1.39
HMGN4-201ENST00000377575 LMO7Q8WWI1 1683 aa23.72■■□□□ 1.39
HMGN4-201ENST00000377575 KTN1Q86UP2 1357 aaKnown RBP23.71■■□□□ 1.39
HMGN4-201ENST00000377575 USP47Q96K76 1375 aa23.71■■□□□ 1.39
HMGN4-201ENST00000377575 ZC3H6P61129 1189 aaKnown RBP23.71■■□□□ 1.39
HMGN4-201ENST00000377575 TTC21AQ8NDW8 1320 aa23.7■■□□□ 1.38
HMGN4-201ENST00000377575 ST20-MTHFSA0A0A6YYL1 179 aa23.7■■□□□ 1.38
HMGN4-201ENST00000377575 PUS7Q96PZ0 661 aaKnown RBP23.7■■□□□ 1.38
HMGN4-201ENST00000377575 TTC21BQ7Z4L5 1316 aa23.69■■□□□ 1.38
HMGN4-201ENST00000377575 NLRP6P59044 892 aa23.69■■□□□ 1.38
HMGN4-201ENST00000377575 CHRNA2Q15822 529 aa23.69■■□□□ 1.38
HMGN4-201ENST00000377575 CCER1Q8TC90 406 aaPredicted RBP23.69■■□□□ 1.38
HMGN4-201ENST00000377575 EP400Q96L91 3159 aa23.69■■□□□ 1.38
HMGN4-201ENST00000377575 USP54Q70EL1 1684 aa23.68■■□□□ 1.38
HMGN4-201ENST00000377575 GCP02774 474 aa23.68■■□□□ 1.38
HMGN4-201ENST00000377575 TESK2Q96S53 571 aa23.68■■□□□ 1.38
HMGN4-201ENST00000377575 CD163L1Q9NR16 1453 aa23.68■■□□□ 1.38
HMGN4-201ENST00000377575 NINLQ9Y2I6 1382 aa23.67■■□□□ 1.38
HMGN4-201ENST00000377575 TMC1Q8TDI8 760 aa23.67■■□□□ 1.38
HMGN4-201ENST00000377575 SPATA31A5Q5VU36 1347 aa23.65■■□□□ 1.38
HMGN4-201ENST00000377575 SPATA31A7Q8IWB4 1347 aa23.65■■□□□ 1.38
HMGN4-201ENST00000377575 HDGFL2Q7Z4V5 671 aaPredicted RBP23.65■■□□□ 1.38
HMGN4-201ENST00000377575 SEPT12Q8IYM1 358 aa23.65■■□□□ 1.38
HMGN4-201ENST00000377575 THSD7AQ9UPZ6 1657 aa23.64■■□□□ 1.38
HMGN4-201ENST00000377575 CAMTA1Q9Y6Y1 1673 aa23.64■■□□□ 1.38
HMGN4-201ENST00000377575 ONECUT3O60422 494 aaPredicted RBP23.64■■□□□ 1.37
HMGN4-201ENST00000377575 A0A0G2JS52 829 aa23.63■■□□□ 1.37
HMGN4-201ENST00000377575 MYT1Q01538 1121 aa23.63■■□□□ 1.37
HMGN4-201ENST00000377575 EDC4Q6P2E9 1401 aaKnown RBP23.63■■□□□ 1.37
HMGN4-201ENST00000377575 TERF2IPQ9NYB0 399 aa23.63■■□□□ 1.37
HMGN4-201ENST00000377575 FAM98CQ17RN3 349 aaKnown RBP23.62■■□□□ 1.37
HMGN4-201ENST00000377575 STRN4Q9NRL3 753 aa23.62■■□□□ 1.37
HMGN4-201ENST00000377575 A0A1W2PP64 1363 aa23.62■■□□□ 1.37
HMGN4-201ENST00000377575 TMF1P82094 1093 aa23.61■■□□□ 1.37
HMGN4-201ENST00000377575 SLC12A5Q9H2X9 1139 aa23.61■■□□□ 1.37
HMGN4-201ENST00000377575 COL5A2P05997 1499 aaPredicted RBP23.61■■□□□ 1.37
HMGN4-201ENST00000377575 EVA1CP58658 441 aa23.6■■□□□ 1.37
HMGN4-201ENST00000377575 KCNH5Q8NCM2 988 aa23.6■■□□□ 1.37
HMGN4-201ENST00000377575 COL18A1P39060 1754 aa23.6■■□□□ 1.37
HMGN4-201ENST00000377575 SPATA31A1Q5TZJ5 1347 aa23.59■■□□□ 1.37
HMGN4-201ENST00000377575 NFAT5O94916 1531 aa23.59■■□□□ 1.37
HMGN4-201ENST00000377575 AATKQ6ZMQ8 1374 aa23.58■■□□□ 1.37
HMGN4-201ENST00000377575 ZBTB7CA1YPR0 619 aa23.58■■□□□ 1.37
HMGN4-201ENST00000377575 KRT27Q7Z3Y8 459 aa23.58■■□□□ 1.37
HMGN4-201ENST00000377575 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.58■■□□□ 1.37
HMGN4-201ENST00000377575 ABCC6O95255 1503 aa23.58■■□□□ 1.36
HMGN4-201ENST00000377575 USP31Q70CQ4 1352 aa23.57■■□□□ 1.36
HMGN4-201ENST00000377575 LTN1O94822 1766 aa23.56■■□□□ 1.36
HMGN4-201ENST00000377575 RGPD5Q99666 1765 aa23.56■■□□□ 1.36
HMGN4-201ENST00000377575 CDCA8Q53HL2 280 aa23.56■■□□□ 1.36
HMGN4-201ENST00000377575 CCDC125Q86Z20 511 aa23.56■■□□□ 1.36
HMGN4-201ENST00000377575 ANKRD36BQ8N2N9 1353 aa23.53■■□□□ 1.36
HMGN4-201ENST00000377575 BLMP54132 1417 aaPredicted RBP23.53■■□□□ 1.36
HMGN4-201ENST00000377575 CRB1P82279 1406 aa23.53■■□□□ 1.36
HMGN4-201ENST00000377575 SOX12O15370 315 aa23.53■■□□□ 1.36
HMGN4-201ENST00000377575 LARP1Q6PKG0 1096 aaKnown RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms