RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 CLUAP1Q96AJ1 413 aa14.21□□□□□ -0.13
CCDC40-203ENST00000374877 METP08581 1390 aa14.2□□□□□ -0.14
CCDC40-203ENST00000374877 FAM135BQ49AJ0 1406 aa14.2□□□□□ -0.14
CCDC40-203ENST00000374877 MAPK8IP3Q9UPT6 1336 aa14.2□□□□□ -0.14
CCDC40-203ENST00000374877 CPS1P31327 1500 aa14.2□□□□□ -0.14
CCDC40-203ENST00000374877 NEUROD2Q15784 382 aa14.2□□□□□ -0.14
CCDC40-203ENST00000374877 TBX22Q9Y458 520 aa14.2□□□□□ -0.14
CCDC40-203ENST00000374877 PDE3AQ14432 1141 aa14.19□□□□□ -0.14
CCDC40-203ENST00000374877 STK26Q9P289 416 aa14.18□□□□□ -0.14
CCDC40-203ENST00000374877 PIK3R4Q99570 1358 aa14.18□□□□□ -0.14
CCDC40-203ENST00000374877 EVC2Q86UK5 1308 aa14.18□□□□□ -0.14
CCDC40-203ENST00000374877 FAM43AQ8N2R8 423 aa14.18□□□□□ -0.14
CCDC40-203ENST00000374877 ARXQ96QS3 562 aa14.18□□□□□ -0.14
CCDC40-203ENST00000374877 ANKLE2Q86XL3 938 aa14.18□□□□□ -0.14
CCDC40-203ENST00000374877 TULP4Q9NRJ4 1543 aa14.17□□□□□ -0.14
CCDC40-203ENST00000374877 UPF2Q9HAU5 1272 aaKnown RBP14.17□□□□□ -0.14
CCDC40-203ENST00000374877 PRAM1Q96QH2 718 aa14.17□□□□□ -0.14
CCDC40-203ENST00000374877 MYOM1P52179 1685 aa14.17□□□□□ -0.14
CCDC40-203ENST00000374877 NPC1L1Q9UHC9 1359 aa14.16□□□□□ -0.14
CCDC40-203ENST00000374877 WWC1Q8IX03 1113 aa14.16□□□□□ -0.14
CCDC40-203ENST00000374877 RRP7AQ9Y3A4 280 aaKnown RBP14.16□□□□□ -0.14
CCDC40-203ENST00000374877 TNNT2P45379 298 aaPredicted RBP14.15□□□□□ -0.14
CCDC40-203ENST00000374877 BCL2L13Q9BXK5 485 aa14.14□□□□□ -0.15
CCDC40-203ENST00000374877 NINLQ9Y2I6 1382 aa14.14□□□□□ -0.15
CCDC40-203ENST00000374877 PTCH1Q13635 1447 aa14.14□□□□□ -0.15
CCDC40-203ENST00000374877 SENP3Q9H4L4 574 aaPredicted RBP14.14□□□□□ -0.15
CCDC40-203ENST00000374877 SPRYD3Q8NCJ5 442 aa14.14□□□□□ -0.15
CCDC40-203ENST00000374877 CARD14Q9BXL6 1004 aa14.14□□□□□ -0.15
CCDC40-203ENST00000374877 NGEFQ8N5V2 710 aa14.13□□□□□ -0.15
CCDC40-203ENST00000374877 PMFBP1Q8TBY8 1022 aa14.13□□□□□ -0.15
CCDC40-203ENST00000374877 TNNQ9UQP3 1299 aa14.13□□□□□ -0.15
CCDC40-203ENST00000374877 PTPRUQ92729 1446 aa14.13□□□□□ -0.15
CCDC40-203ENST00000374877 RSPH6AQ9H0K4 717 aa14.12□□□□□ -0.15
CCDC40-203ENST00000374877 ATAD2Q6PL18 1390 aa14.12□□□□□ -0.15
CCDC40-203ENST00000374877 KDM4FA0A1W2PPD8 638 aa14.12□□□□□ -0.15
CCDC40-203ENST00000374877 PCDHB15Q9Y5E8 787 aa14.12□□□□□ -0.15
CCDC40-203ENST00000374877 XRN1Q8IZH2 1706 aaKnown RBP14.12□□□□□ -0.15
CCDC40-203ENST00000374877 PDZRN3Q9UPQ7 1066 aa14.11□□□□□ -0.15
CCDC40-203ENST00000374877 NPHP4O75161 1426 aaPredicted RBP14.11□□□□□ -0.15
CCDC40-203ENST00000374877 VIRMAQ69YN4 1812 aaKnown RBP14.11□□□□□ -0.15
CCDC40-203ENST00000374877 L1TD1Q5T7N2 865 aaKnown RBP14.11□□□□□ -0.15
CCDC40-203ENST00000374877 SLC26A8Q96RN1 970 aa14.11□□□□□ -0.15
CCDC40-203ENST00000374877 ADGRB2O60241 1585 aa14.11□□□□□ -0.15
CCDC40-203ENST00000374877 RLBP1P12271 317 aa14.11□□□□□ -0.15
CCDC40-203ENST00000374877 RARSP54136 660 aaKnown RBP14.11□□□□□ -0.15
CCDC40-203ENST00000374877 ROBO2Q9HCK4 1378 aa14.1□□□□□ -0.15
CCDC40-203ENST00000374877 TBC1D2Q9BYX2 928 aa14.1□□□□□ -0.15
CCDC40-203ENST00000374877 TBC1D32Q96NH3 1257 aa14.1□□□□□ -0.15
CCDC40-203ENST00000374877 ANTXR1Q9H6X2 564 aa14.1□□□□□ -0.15
CCDC40-203ENST00000374877 MINK1Q8N4C8 1332 aaPredicted RBP14.1□□□□□ -0.15
CCDC40-203ENST00000374877 WAPLQ7Z5K2 1190 aa14.09□□□□□ -0.15
CCDC40-203ENST00000374877 MORC1Q86VD1 984 aa14.09□□□□□ -0.15
CCDC40-203ENST00000374877 SAFB2Q14151 953 aaKnown RBP eCLIP14.08□□□□□ -0.15
CCDC40-203ENST00000374877 TCP11L2Q8N4U5 519 aa14.08□□□□□ -0.16
CCDC40-203ENST00000374877 GZF1Q9H116 711 aaPredicted RBP14.08□□□□□ -0.16
CCDC40-203ENST00000374877 AMOTL2Q9Y2J4 779 aa14.08□□□□□ -0.16
CCDC40-203ENST00000374877 RRAGDQ9NQL2 400 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-203ENST00000374877 RUNDC1Q96C34 613 aa14.07□□□□□ -0.16
CCDC40-203ENST00000374877 RWDD1Q9H446 243 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-203ENST00000374877 CDK19Q9BWU1 502 aa14.07□□□□□ -0.16
CCDC40-203ENST00000374877 POLR3AO14802 1390 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-203ENST00000374877 ANKRD36BQ8N2N9 1353 aa14.06□□□□□ -0.16
CCDC40-203ENST00000374877 SRPK2P78362 688 aaKnown RBP14.06□□□□□ -0.16
CCDC40-203ENST00000374877 UBE2Q2Q8WVN8 375 aa14.06□□□□□ -0.16
CCDC40-203ENST00000374877 CABP2Q9NPB3 220 aa14.06□□□□□ -0.16
CCDC40-203ENST00000374877 USP32Q8NFA0 1604 aa14.06□□□□□ -0.16
CCDC40-203ENST00000374877 WASLO00401 505 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-203ENST00000374877 GOLGA6L3A6NEY3 463 aa14.04□□□□□ -0.16
CCDC40-203ENST00000374877 MFAP1P55081 439 aaKnown RBP14.04□□□□□ -0.16
CCDC40-203ENST00000374877 AAMPQ13685 434 aa14.04□□□□□ -0.16
CCDC40-203ENST00000374877 NWD1Q149M9 1564 aa14.04□□□□□ -0.16
CCDC40-203ENST00000374877 CHD2O14647 1828 aaKnown RBP14.04□□□□□ -0.16
CCDC40-203ENST00000374877 FTSJ3Q8IY81 847 aaKnown RBP14.04□□□□□ -0.16
CCDC40-203ENST00000374877 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-203ENST00000374877 SLC12A5Q9H2X9 1139 aa14.03□□□□□ -0.16
CCDC40-203ENST00000374877 NSD3Q9BZ95 1437 aa14.03□□□□□ -0.16
CCDC40-203ENST00000374877 ATP7BP35670 1465 aa14.03□□□□□ -0.16
CCDC40-203ENST00000374877 LMTK3Q96Q04 1460 aa14.03□□□□□ -0.16
CCDC40-203ENST00000374877 MCM4P33991 863 aa14.03□□□□□ -0.16
CCDC40-203ENST00000374877 NCKAP5LQ9HCH0 1330 aa14.03□□□□□ -0.16
CCDC40-203ENST00000374877 XRCC6P12956 609 aaKnown RBP eCLIP14.02□□□□□ -0.16
CCDC40-203ENST00000374877 WDR63Q8IWG1 891 aa14.02□□□□□ -0.17
CCDC40-203ENST00000374877 C22orf23Q9BZE7 217 aa14.02□□□□□ -0.17
CCDC40-203ENST00000374877 MTHFSP49914 203 aa14.01□□□□□ -0.17
CCDC40-203ENST00000374877 NSD2O96028 1365 aa14.01□□□□□ -0.17
CCDC40-203ENST00000374877 KCNA6P17658 529 aa14.01□□□□□ -0.17
CCDC40-203ENST00000374877 MVPQ14764 893 aaKnown RBP14.01□□□□□ -0.17
CCDC40-203ENST00000374877 PANK2Q9BZ23 570 aa14.01□□□□□ -0.17
CCDC40-203ENST00000374877 TERF2IPQ9NYB0 399 aa14.01□□□□□ -0.17
CCDC40-203ENST00000374877 CD163L1Q9NR16 1453 aa14□□□□□ -0.17
CCDC40-203ENST00000374877 CFAP53Q96M91 514 aa14□□□□□ -0.17
CCDC40-203ENST00000374877 MYH16Q9H6N6 1097 aa14□□□□□ -0.17
CCDC40-203ENST00000374877 ZKSCAN2Q63HK3 967 aa13.99□□□□□ -0.17
CCDC40-203ENST00000374877 CHMP5Q9NZZ3 219 aa13.99□□□□□ -0.17
CCDC40-203ENST00000374877 U2AF1L5P0DN76 240 aaPredicted RBP13.99□□□□□ -0.17
CCDC40-203ENST00000374877 U2AF1Q01081 240 aaKnown RBP eCLIP13.99□□□□□ -0.17
CCDC40-203ENST00000374877 DZIP1LQ8IYY4 767 aaKnown RBP13.99□□□□□ -0.17
CCDC40-203ENST00000374877 A0A1W2PP64 1363 aa13.99□□□□□ -0.17
CCDC40-203ENST00000374877 TRAK2O60296 914 aa13.98□□□□□ -0.17
CCDC40-203ENST00000374877 HDGFL2Q7Z4V5 671 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms