RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 COL16A1Q07092 1604 aaPredicted RBP20.84■□□□□ 0.93
CCDC40-202ENST00000374876 SLC24A1O60721 1099 aa20.83■□□□□ 0.93
CCDC40-202ENST00000374876 KIF1AQ12756 1690 aa20.83■□□□□ 0.92
CCDC40-202ENST00000374876 LRRC59Q96AG4 307 aaKnown RBP20.83■□□□□ 0.92
CCDC40-202ENST00000374876 SMG6Q86US8 1419 aaKnown RBP20.82■□□□□ 0.92
CCDC40-202ENST00000374876 ITSN1Q15811 1721 aa20.82■□□□□ 0.92
CCDC40-202ENST00000374876 TOPAZ1Q8N9V7 1692 aa20.81■□□□□ 0.92
CCDC40-202ENST00000374876 PXDNQ92626 1479 aa20.81■□□□□ 0.92
CCDC40-202ENST00000374876 SLC12A5Q9H2X9 1139 aa20.81■□□□□ 0.92
CCDC40-202ENST00000374876 ATAD2Q6PL18 1390 aa20.81■□□□□ 0.92
CCDC40-202ENST00000374876 PARD3Q8TEW0 1356 aa20.81■□□□□ 0.92
CCDC40-202ENST00000374876 PER1O15534 1290 aaPredicted RBP20.8■□□□□ 0.92
CCDC40-202ENST00000374876 NLRP13Q86W25 1043 aa20.8■□□□□ 0.92
CCDC40-202ENST00000374876 PUS7Q96PZ0 661 aaKnown RBP20.78■□□□□ 0.92
CCDC40-202ENST00000374876 POLR3AO14802 1390 aaPredicted RBP20.78■□□□□ 0.92
CCDC40-202ENST00000374876 PAK3O75914 559 aaPredicted RBP20.78■□□□□ 0.92
CCDC40-202ENST00000374876 LMOD2Q6P5Q4 547 aa20.78■□□□□ 0.92
CCDC40-202ENST00000374876 PPP4R2Q9NY27 417 aa20.78■□□□□ 0.92
CCDC40-202ENST00000374876 NUDCQ9Y266 331 aa20.78■□□□□ 0.92
CCDC40-202ENST00000374876 JCADQ9P266 1359 aa20.77■□□□□ 0.92
CCDC40-202ENST00000374876 PLEKHG5O94827 1062 aa20.77■□□□□ 0.91
CCDC40-202ENST00000374876 PANK3Q9H999 370 aa20.77■□□□□ 0.91
CCDC40-202ENST00000374876 CDCA8Q53HL2 280 aa20.76■□□□□ 0.91
CCDC40-202ENST00000374876 SPATA31A3Q5VYP0 1347 aa20.75■□□□□ 0.91
CCDC40-202ENST00000374876 NUTM2BA6NNL0 878 aaPredicted RBP20.73■□□□□ 0.91
CCDC40-202ENST00000374876 NUTM2EB1AL46 878 aaPredicted RBP20.73■□□□□ 0.91
CCDC40-202ENST00000374876 CC2D1BQ5T0F9 858 aaKnown RBP20.73■□□□□ 0.91
CCDC40-202ENST00000374876 NUTM2AQ8IVF1 878 aaPredicted RBP20.73■□□□□ 0.91
CCDC40-202ENST00000374876 PNPLA6Q8IY17 1366 aa20.73■□□□□ 0.91
CCDC40-202ENST00000374876 ZNF692Q9BU19 519 aaPredicted RBP20.72■□□□□ 0.91
CCDC40-202ENST00000374876 NUTM2GQ5VZR2 741 aa20.71■□□□□ 0.91
CCDC40-202ENST00000374876 SBNO1A3KN83 1393 aa20.71■□□□□ 0.91
CCDC40-202ENST00000374876 SENP3-EIF4A1A0A087X0R7 540 aa20.71■□□□□ 0.91
CCDC40-202ENST00000374876 CD163L1Q9NR16 1453 aa20.7■□□□□ 0.9
CCDC40-202ENST00000374876 TNS3Q68CZ2 1445 aa20.7■□□□□ 0.9
CCDC40-202ENST00000374876 CPSF1Q10570 1443 aaKnown RBP20.7■□□□□ 0.9
CCDC40-202ENST00000374876 CABLES1Q8TDN4 633 aa20.7■□□□□ 0.9
CCDC40-202ENST00000374876 TRPM3Q9HCF6 1732 aaPredicted RBP20.7■□□□□ 0.9
CCDC40-202ENST00000374876 USP6P35125 1406 aa20.69■□□□□ 0.9
CCDC40-202ENST00000374876 HDGFL2Q7Z4V5 671 aaPredicted RBP20.69■□□□□ 0.9
CCDC40-202ENST00000374876 TERF2IPQ9NYB0 399 aa20.69■□□□□ 0.9
CCDC40-202ENST00000374876 SHPRHQ149N8 1683 aa20.69■□□□□ 0.9
CCDC40-202ENST00000374876 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.68■□□□□ 0.9
CCDC40-202ENST00000374876 ABTB2Q8N961 1025 aa20.68■□□□□ 0.9
CCDC40-202ENST00000374876 A0A1W2PP64 1363 aa20.67■□□□□ 0.9
CCDC40-202ENST00000374876 SPATA31A6Q5VVP1 1343 aa20.67■□□□□ 0.9
CCDC40-202ENST00000374876 AKAP12Q02952 1782 aa20.66■□□□□ 0.9
CCDC40-202ENST00000374876 NINLQ9Y2I6 1382 aa20.66■□□□□ 0.9
CCDC40-202ENST00000374876 TTC21BQ7Z4L5 1316 aa20.65■□□□□ 0.9
CCDC40-202ENST00000374876 RBM19Q9Y4C8 960 aaKnown RBP20.65■□□□□ 0.9
CCDC40-202ENST00000374876 SSH2Q76I76 1423 aa20.65■□□□□ 0.9
CCDC40-202ENST00000374876 ARHGEF10O15013 1369 aa20.64■□□□□ 0.9
CCDC40-202ENST00000374876 ALS2Q96Q42 1657 aa20.64■□□□□ 0.9
CCDC40-202ENST00000374876 RNF123Q5XPI4 1314 aa20.64■□□□□ 0.89
CCDC40-202ENST00000374876 ADAMTS2O95450 1211 aa20.64■□□□□ 0.89
CCDC40-202ENST00000374876 KNSTRNQ9Y448 316 aa20.64■□□□□ 0.89
CCDC40-202ENST00000374876 LRP6O75581 1613 aa20.64■□□□□ 0.89
CCDC40-202ENST00000374876 MYOM1P52179 1685 aa20.63■□□□□ 0.89
CCDC40-202ENST00000374876 ANKRD36BQ8N2N9 1353 aa20.63■□□□□ 0.89
CCDC40-202ENST00000374876 HAP1P54257 671 aaPredicted RBP20.62■□□□□ 0.89
CCDC40-202ENST00000374876 B4GALNT3Q6L9W6 998 aa20.62■□□□□ 0.89
CCDC40-202ENST00000374876 NLRP6P59044 892 aa20.61■□□□□ 0.89
CCDC40-202ENST00000374876 MEX3CQ5U5Q3 659 aaKnown RBP20.61■□□□□ 0.89
CCDC40-202ENST00000374876 CARD14Q9BXL6 1004 aa20.61■□□□□ 0.89
CCDC40-202ENST00000374876 ZRANB1Q9UGI0 708 aa20.61■□□□□ 0.89
CCDC40-202ENST00000374876 COL22A1Q8NFW1 1626 aaPredicted RBP20.61■□□□□ 0.89
CCDC40-202ENST00000374876 MON2Q7Z3U7 1717 aa20.61■□□□□ 0.89
CCDC40-202ENST00000374876 NME9Q86XW9 330 aa20.6■□□□□ 0.89
CCDC40-202ENST00000374876 INSRP06213 1382 aa20.6■□□□□ 0.89
CCDC40-202ENST00000374876 TTC21AQ8NDW8 1320 aa20.59■□□□□ 0.89
CCDC40-202ENST00000374876 MED1Q15648 1581 aaPredicted RBP20.59■□□□□ 0.89
CCDC40-202ENST00000374876 EDC4Q6P2E9 1401 aaKnown RBP20.58■□□□□ 0.89
CCDC40-202ENST00000374876 PDE3BQ13370 1112 aa20.58■□□□□ 0.89
CCDC40-202ENST00000374876 SALL2Q9Y467 1007 aaPredicted RBP20.58■□□□□ 0.89
CCDC40-202ENST00000374876 NRKQ7Z2Y5 1582 aa20.57■□□□□ 0.88
CCDC40-202ENST00000374876 C8orf37Q96NL8 207 aa20.57■□□□□ 0.88
CCDC40-202ENST00000374876 PIK3C2AO00443 1686 aa20.56■□□□□ 0.88
CCDC40-202ENST00000374876 AMER1Q5JTC6 1135 aaPredicted RBP20.56■□□□□ 0.88
CCDC40-202ENST00000374876 BLMP54132 1417 aaPredicted RBP20.56■□□□□ 0.88
CCDC40-202ENST00000374876 SOX12O15370 315 aa20.54■□□□□ 0.88
CCDC40-202ENST00000374876 ZC3H6P61129 1189 aaKnown RBP20.54■□□□□ 0.88
CCDC40-202ENST00000374876 NGLY1Q96IV0 654 aa20.54■□□□□ 0.88
CCDC40-202ENST00000374876 NSD3Q9BZ95 1437 aa20.53■□□□□ 0.88
CCDC40-202ENST00000374876 GCP02774 474 aa20.53■□□□□ 0.88
CCDC40-202ENST00000374876 PPP2R1AP30153 589 aa20.53■□□□□ 0.88
CCDC40-202ENST00000374876 PHF23Q9BUL5 403 aaPredicted RBP20.53■□□□□ 0.88
CCDC40-202ENST00000374876 FYB1O15117 783 aa20.53■□□□□ 0.88
CCDC40-202ENST00000374876 USP19O94966 1318 aa20.52■□□□□ 0.88
CCDC40-202ENST00000374876 GGNBP2Q9H3C7 697 aa20.52■□□□□ 0.88
CCDC40-202ENST00000374876 ABCA3Q99758 1704 aa20.52■□□□□ 0.88
CCDC40-202ENST00000374876 FAM83GA6ND36 823 aa20.51■□□□□ 0.87
CCDC40-202ENST00000374876 CRYBG1Q9Y4K1 1723 aa20.51■□□□□ 0.87
CCDC40-202ENST00000374876 RGS17Q9UGC6 210 aaPredicted RBP20.51■□□□□ 0.87
CCDC40-202ENST00000374876 NPC1L1Q9UHC9 1359 aa20.5■□□□□ 0.87
CCDC40-202ENST00000374876 MYT1Q01538 1121 aa20.5■□□□□ 0.87
CCDC40-202ENST00000374876 RCAN3Q9UKA8 241 aa20.5■□□□□ 0.87
CCDC40-202ENST00000374876 ZBTB7CA1YPR0 619 aa20.49■□□□□ 0.87
CCDC40-202ENST00000374876 USP31Q70CQ4 1352 aa20.49■□□□□ 0.87
CCDC40-202ENST00000374876 WDR43Q15061 677 aaKnown RBP eCLIP20.49■□□□□ 0.87
CCDC40-202ENST00000374876 CHRNA2Q15822 529 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms