RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 CCDC102AQ96A19 550 aa12.59□□□□□ -0.39
TPM3-213ENST00000368545 MINK1Q8N4C8 1332 aaPredicted RBP12.59□□□□□ -0.39
TPM3-213ENST00000368545 PRKAR2AP13861 404 aaKnown RBP12.58□□□□□ -0.4
TPM3-213ENST00000368545 PARP9Q8IXQ6 854 aa12.58□□□□□ -0.4
TPM3-213ENST00000368545 ONECUT3O60422 494 aaPredicted RBP12.58□□□□□ -0.4
TPM3-213ENST00000368545 SPDYE16A6NNV3 312 aaPredicted RBP12.57□□□□□ -0.4
TPM3-213ENST00000368545 TMEM94Q12767 1356 aa12.57□□□□□ -0.4
TPM3-213ENST00000368545 ERBINQ96RT1 1412 aa12.57□□□□□ -0.4
TPM3-213ENST00000368545 UBR1Q8IWV7 1749 aa12.56□□□□□ -0.4
TPM3-213ENST00000368545 WASHC2CQ9Y4E1 1318 aa12.56□□□□□ -0.4
TPM3-213ENST00000368545 UNC13BO14795 1591 aa12.56□□□□□ -0.4
TPM3-213ENST00000368545 PDIA4P13667 645 aaKnown RBP12.55□□□□□ -0.4
TPM3-213ENST00000368545 AMHR2Q16671 573 aa12.55□□□□□ -0.4
TPM3-213ENST00000368545 RBM33Q96EV2 1170 aaKnown RBP12.55□□□□□ -0.4
TPM3-213ENST00000368545 GOLGA2Q08379 1002 aa12.55□□□□□ -0.4
TPM3-213ENST00000368545 MAP2K5Q13163 448 aa12.55□□□□□ -0.4
TPM3-213ENST00000368545 MPHOSPH9Q99550 1183 aa12.55□□□□□ -0.4
TPM3-213ENST00000368545 ERVK-7P63135 1459 aa12.54□□□□□ -0.4
TPM3-213ENST00000368545 IRF6O14896 467 aa12.54□□□□□ -0.4
TPM3-213ENST00000368545 LRP6O75581 1613 aa12.54□□□□□ -0.4
TPM3-213ENST00000368545 CLUAP1Q96AJ1 413 aa12.53□□□□□ -0.4
TPM3-213ENST00000368545 SLAIN2Q9P270 581 aa12.53□□□□□ -0.4
TPM3-213ENST00000368545 CCDC82Q8N4S0 544 aa12.53□□□□□ -0.4
TPM3-213ENST00000368545 NHSL1Q5SYE7 1610 aa12.53□□□□□ -0.4
TPM3-213ENST00000368545 PROSER2Q86WR7 435 aaPredicted RBP12.52□□□□□ -0.4
TPM3-213ENST00000368545 EIF2AK4Q9P2K8 1649 aaKnown RBP12.52□□□□□ -0.41
TPM3-213ENST00000368545 DSG2Q14126 1118 aa12.52□□□□□ -0.41
TPM3-213ENST00000368545 NECTIN2Q92692 538 aa12.52□□□□□ -0.41
TPM3-213ENST00000368545 RGS12O14924 1447 aa12.51□□□□□ -0.41
TPM3-213ENST00000368545 MROH1Q8NDA8 1641 aa12.51□□□□□ -0.41
TPM3-213ENST00000368545 FBXO31Q5XUX0 539 aaPredicted RBP12.51□□□□□ -0.41
TPM3-213ENST00000368545 TXNDC2Q86VQ3 553 aa12.51□□□□□ -0.41
TPM3-213ENST00000368545 IQGAP3Q86VI3 1631 aa12.51□□□□□ -0.41
TPM3-213ENST00000368545 NUTM2FA1L443 756 aa12.5□□□□□ -0.41
TPM3-213ENST00000368545 IFFO2Q5TF58 517 aa12.5□□□□□ -0.41
TPM3-213ENST00000368545 ARHGAP31Q2M1Z3 1444 aa12.5□□□□□ -0.41
TPM3-213ENST00000368545 ZBTB7CA1YPR0 619 aa12.5□□□□□ -0.41
TPM3-213ENST00000368545 NUP155O75694 1391 aa12.5□□□□□ -0.41
TPM3-213ENST00000368545 SIN3AQ96ST3 1273 aa12.49□□□□□ -0.41
TPM3-213ENST00000368545 TMEM106CQ9BVX2 250 aa12.49□□□□□ -0.41
TPM3-213ENST00000368545 TONSLQ96HA7 1378 aa12.49□□□□□ -0.41
TPM3-213ENST00000368545 TRAK2O60296 914 aa12.49□□□□□ -0.41
TPM3-213ENST00000368545 GOPCQ9HD26 462 aa12.49□□□□□ -0.41
TPM3-213ENST00000368545 ANKRD30BQ9BXX2 1392 aa12.48□□□□□ -0.41
TPM3-213ENST00000368545 GRXCR2A6NFK2 248 aa12.48□□□□□ -0.41
TPM3-213ENST00000368545 A6NJR5 290 aa12.48□□□□□ -0.41
TPM3-213ENST00000368545 NEUROD1Q13562 356 aa12.48□□□□□ -0.41
TPM3-213ENST00000368545 NUTM2BA6NNL0 878 aaPredicted RBP12.47□□□□□ -0.41
TPM3-213ENST00000368545 NUTM2EB1AL46 878 aaPredicted RBP12.47□□□□□ -0.41
TPM3-213ENST00000368545 KIF3BO15066 747 aa12.47□□□□□ -0.41
TPM3-213ENST00000368545 FECHP22830 423 aa12.47□□□□□ -0.41
TPM3-213ENST00000368545 NUTM2DQ5VT03 806 aaPredicted RBP12.47□□□□□ -0.41
TPM3-213ENST00000368545 NUTM2AQ8IVF1 878 aaPredicted RBP12.47□□□□□ -0.41
TPM3-213ENST00000368545 SETBP1Q9Y6X0 1596 aa12.47□□□□□ -0.41
TPM3-213ENST00000368545 AFF2P51816 1311 aa12.47□□□□□ -0.41
TPM3-213ENST00000368545 RPRD2Q5VT52 1461 aaKnown RBP12.46□□□□□ -0.41
TPM3-213ENST00000368545 TMEM2Q9UHN6 1383 aa12.46□□□□□ -0.41
TPM3-213ENST00000368545 DIP2AQ14689 1571 aa12.46□□□□□ -0.42
TPM3-213ENST00000368545 GNPATO15228 680 aa12.45□□□□□ -0.42
TPM3-213ENST00000368545 DCCP43146 1447 aa12.45□□□□□ -0.42
TPM3-213ENST00000368545 TET3O43151 1660 aa12.45□□□□□ -0.42
TPM3-213ENST00000368545 HDGFP51858 240 aaKnown RBP12.44□□□□□ -0.42
TPM3-213ENST00000368545 CCDC9Q9Y3X0 531 aaKnown RBP12.44□□□□□ -0.42
TPM3-213ENST00000368545 TTLL12Q14166 644 aaPredicted RBP12.44□□□□□ -0.42
TPM3-213ENST00000368545 QTRT2Q9H974 415 aaKnown RBP12.43□□□□□ -0.42
TPM3-213ENST00000368545 TRPC6Q9Y210 931 aa12.43□□□□□ -0.42
TPM3-213ENST00000368545 PHF12Q96QT6 1004 aa12.43□□□□□ -0.42
TPM3-213ENST00000368545 PIK3R4Q99570 1358 aa12.42□□□□□ -0.42
TPM3-213ENST00000368545 TRPC5Q9UL62 973 aaPredicted RBP12.41□□□□□ -0.42
TPM3-213ENST00000368545 BLMP54132 1417 aaPredicted RBP12.41□□□□□ -0.42
TPM3-213ENST00000368545 PTCH1Q13635 1447 aa12.41□□□□□ -0.42
TPM3-213ENST00000368545 EFCAB6Q5THR3 1501 aa12.41□□□□□ -0.42
TPM3-213ENST00000368545 PPP1R15AO75807 674 aaPredicted RBP12.4□□□□□ -0.42
TPM3-213ENST00000368545 MS4A1P11836 297 aa12.4□□□□□ -0.42
TPM3-213ENST00000368545 OSBPP22059 807 aa12.4□□□□□ -0.42
TPM3-213ENST00000368545 FOXK1P85037 733 aa12.4□□□□□ -0.42
TPM3-213ENST00000368545 LRRC59Q96AG4 307 aaKnown RBP12.4□□□□□ -0.42
TPM3-213ENST00000368545 LTKP29376 864 aa12.4□□□□□ -0.43
TPM3-213ENST00000368545 FXR2P51116 673 aaKnown RBP eCLIP12.4□□□□□ -0.432e-6■■□□□ 12.8
TPM3-213ENST00000368545 HIC1Q14526 733 aa12.4□□□□□ -0.43
TPM3-213ENST00000368545 KANK1Q14678 1352 aa12.4□□□□□ -0.43
TPM3-213ENST00000368545 SPHKAPQ2M3C7 1700 aa12.4□□□□□ -0.43
TPM3-213ENST00000368545 MCM6Q14566 821 aa12.39□□□□□ -0.43
TPM3-213ENST00000368545 PCMTD1Q96MG8 357 aaPredicted RBP12.39□□□□□ -0.43
TPM3-213ENST00000368545 ATF3P18847 181 aa12.38□□□□□ -0.43
TPM3-213ENST00000368545 GIGYF2Q6Y7W6 1299 aaKnown RBP12.38□□□□□ -0.43
TPM3-213ENST00000368545 E9PCH4 1651 aa12.38□□□□□ -0.43
TPM3-213ENST00000368545 CHD2O14647 1828 aaKnown RBP12.37□□□□□ -0.43
TPM3-213ENST00000368545 C19orf44Q9H6X5 657 aa12.37□□□□□ -0.43
TPM3-213ENST00000368545 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.37□□□□□ -0.439e-8■■□□□ 14.3
TPM3-213ENST00000368545 SF3B2Q13435 895 aaKnown RBP12.37□□□□□ -0.43
TPM3-213ENST00000368545 LMTK2Q8IWU2 1503 aa12.36□□□□□ -0.43
TPM3-213ENST00000368545 REPIN1Q9BWE0 567 aaKnown RBP12.36□□□□□ -0.43
TPM3-213ENST00000368545 FCHSD2O94868 740 aa12.35□□□□□ -0.43
TPM3-213ENST00000368545 TMC2Q8TDI7 906 aa12.35□□□□□ -0.43
TPM3-213ENST00000368545 ATRNO75882 1429 aa12.35□□□□□ -0.43
TPM3-213ENST00000368545 PLPP6Q8IY26 295 aa12.35□□□□□ -0.43
TPM3-213ENST00000368545 CCDC144AA2RUR9 1427 aa12.35□□□□□ -0.43
TPM3-213ENST00000368545 PLEKHG1Q9ULL1 1385 aa12.35□□□□□ -0.43
TPM3-213ENST00000368545 PIK3C2BO00750 1634 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms