RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.98□□□□□ -0.17
TPM3-212ENST00000368533 NGDNQ8NEJ9 315 aaKnown RBP13.98□□□□□ -0.17
TPM3-212ENST00000368533 NPC1L1Q9UHC9 1359 aa13.97□□□□□ -0.17
TPM3-212ENST00000368533 SMG6Q86US8 1419 aaKnown RBP13.97□□□□□ -0.17
TPM3-212ENST00000368533 XPCQ01831 940 aaPredicted RBP13.97□□□□□ -0.17
TPM3-212ENST00000368533 DLC1Q96QB1 1528 aa13.97□□□□□ -0.17
TPM3-212ENST00000368533 DMRT2Q9Y5R5 561 aa13.96□□□□□ -0.17
TPM3-212ENST00000368533 CFAP53Q96M91 514 aa13.95□□□□□ -0.18
TPM3-212ENST00000368533 PUS7Q96PZ0 661 aaKnown RBP13.95□□□□□ -0.18
TPM3-212ENST00000368533 FAM135BQ49AJ0 1406 aa13.95□□□□□ -0.18
TPM3-212ENST00000368533 MED14O60244 1454 aa13.94□□□□□ -0.18
TPM3-212ENST00000368533 TECPR2O15040 1411 aa13.94□□□□□ -0.18
TPM3-212ENST00000368533 SPINK5Q9NQ38 1064 aaPredicted RBP13.94□□□□□ -0.18
TPM3-212ENST00000368533 PLIN1O60240 522 aa13.94□□□□□ -0.18
TPM3-212ENST00000368533 HMOX1P09601 288 aa13.94□□□□□ -0.18
TPM3-212ENST00000368533 LAS1LQ9Y4W2 734 aaKnown RBP13.94□□□□□ -0.18
TPM3-212ENST00000368533 SETD1BQ9UPS6 1966 aaKnown RBP13.94□□□□□ -0.18
TPM3-212ENST00000368533 ATP7BP35670 1465 aa13.93□□□□□ -0.18
TPM3-212ENST00000368533 ZBTB7CA1YPR0 619 aa13.93□□□□□ -0.18
TPM3-212ENST00000368533 CPS1P31327 1500 aa13.93□□□□□ -0.18
TPM3-212ENST00000368533 COG3Q96JB2 828 aa13.93□□□□□ -0.18
TPM3-212ENST00000368533 LMOD2Q6P5Q4 547 aa13.92□□□□□ -0.18
TPM3-212ENST00000368533 KDM4FA0A1W2PPD8 638 aa13.92□□□□□ -0.18
TPM3-212ENST00000368533 ZBTB47Q9UFB7 747 aaPredicted RBP13.92□□□□□ -0.18
TPM3-212ENST00000368533 BLMP54132 1417 aaPredicted RBP13.92□□□□□ -0.18
TPM3-212ENST00000368533 NINLQ9Y2I6 1382 aa13.91□□□□□ -0.18
TPM3-212ENST00000368533 ESCO1Q5FWF5 840 aa13.91□□□□□ -0.18
TPM3-212ENST00000368533 NPM2Q86SE8 214 aaKnown RBP13.91□□□□□ -0.18
TPM3-212ENST00000368533 POLKQ9UBT6 870 aa13.91□□□□□ -0.18
TPM3-212ENST00000368533 NKTRP30414 1462 aaKnown RBP13.91□□□□□ -0.18
TPM3-212ENST00000368533 RGPD8O14715 1765 aaPredicted RBP13.91□□□□□ -0.18
TPM3-212ENST00000368533 TCP11L2Q8N4U5 519 aa13.91□□□□□ -0.18
TPM3-212ENST00000368533 BRPF3Q9ULD4 1205 aa13.9□□□□□ -0.18
TPM3-212ENST00000368533 PROSER2Q86WR7 435 aaPredicted RBP13.9□□□□□ -0.18
TPM3-212ENST00000368533 SIRT1Q96EB6 747 aa13.9□□□□□ -0.18
TPM3-212ENST00000368533 NPHP4O75161 1426 aaPredicted RBP13.9□□□□□ -0.18
TPM3-212ENST00000368533 POLR3AO14802 1390 aaPredicted RBP13.9□□□□□ -0.18
TPM3-212ENST00000368533 TTC21BQ7Z4L5 1316 aa13.89□□□□□ -0.19
TPM3-212ENST00000368533 RCAN3Q9UKA8 241 aa13.89□□□□□ -0.19
TPM3-212ENST00000368533 DIAPH1O60610 1272 aaKnown RBP13.88□□□□□ -0.19
TPM3-212ENST00000368533 ANP32AP39687 249 aaKnown RBP13.88□□□□□ -0.19
TPM3-212ENST00000368533 DDX17Q92841 729 aaKnown RBP13.88□□□□□ -0.19
TPM3-212ENST00000368533 IPO9Q96P70 1041 aaKnown RBP13.88□□□□□ -0.19
TPM3-212ENST00000368533 ORAI2Q96SN7 254 aa13.88□□□□□ -0.19
TPM3-212ENST00000368533 KNDC1Q76NI1 1749 aa13.88□□□□□ -0.19
TPM3-212ENST00000368533 CPSF1Q10570 1443 aaKnown RBP13.88□□□□□ -0.19
TPM3-212ENST00000368533 NSD2O96028 1365 aa13.87□□□□□ -0.19
TPM3-212ENST00000368533 FOXO3O43524 673 aa13.87□□□□□ -0.19
TPM3-212ENST00000368533 NLRP6P59044 892 aa13.87□□□□□ -0.19
TPM3-212ENST00000368533 GOLGA2Q08379 1002 aa13.87□□□□□ -0.19
TPM3-212ENST00000368533 EDC4Q6P2E9 1401 aaKnown RBP13.86□□□□□ -0.19
TPM3-212ENST00000368533 EXOC6Q8TAG9 804 aa13.86□□□□□ -0.19
TPM3-212ENST00000368533 DIP2AQ14689 1571 aa13.86□□□□□ -0.19
TPM3-212ENST00000368533 NEFMP07197 916 aa13.86□□□□□ -0.19
TPM3-212ENST00000368533 RRP1P56182 461 aaKnown RBP13.86□□□□□ -0.19
TPM3-212ENST00000368533 LTV1Q96GA3 475 aaPredicted RBP13.86□□□□□ -0.19
TPM3-212ENST00000368533 ZNF692Q9BU19 519 aaPredicted RBP13.86□□□□□ -0.19
TPM3-212ENST00000368533 RUNDC1Q96C34 613 aa13.85□□□□□ -0.19
TPM3-212ENST00000368533 HSP90AB2PQ58FF8 381 aa13.85□□□□□ -0.19
TPM3-212ENST00000368533 ABTB2Q8N961 1025 aa13.85□□□□□ -0.19
TPM3-212ENST00000368533 CDC42BPGQ6DT37 1551 aa13.85□□□□□ -0.19
TPM3-212ENST00000368533 PLEKHG3A1L390 1219 aa13.84□□□□□ -0.19
TPM3-212ENST00000368533 PTCH1Q13635 1447 aa13.84□□□□□ -0.19
TPM3-212ENST00000368533 PRKAR2BP31323 418 aa13.84□□□□□ -0.19
TPM3-212ENST00000368533 WWC1Q8IX03 1113 aa13.84□□□□□ -0.19
TPM3-212ENST00000368533 SHPRHQ149N8 1683 aa13.84□□□□□ -0.19
TPM3-212ENST00000368533 THUMPD2Q9BTF0 503 aaKnown RBP13.84□□□□□ -0.19
TPM3-212ENST00000368533 PHF8Q9UPP1 1060 aa13.84□□□□□ -0.19
TPM3-212ENST00000368533 MAP2P11137 1827 aaKnown RBP13.83□□□□□ -0.2
TPM3-212ENST00000368533 KIF20BQ96Q89 1820 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 USP32Q8NFA0 1604 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 USP6P35125 1406 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 MAPK8IP3Q9UPT6 1336 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 DUSP27Q5VZP5 1158 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 BCL2L13Q9BXK5 485 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 RNF123Q5XPI4 1314 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 PSME1Q06323 249 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 AEBP1Q8IUX7 1158 aa13.83□□□□□ -0.2
TPM3-212ENST00000368533 TSR2Q969E8 191 aaKnown RBP13.82□□□□□ -0.2
TPM3-212ENST00000368533 PHACTR3Q96KR7 559 aa13.82□□□□□ -0.2
TPM3-212ENST00000368533 ZNF142P52746 1687 aaPredicted RBP13.82□□□□□ -0.2
TPM3-212ENST00000368533 ITSN1Q15811 1721 aa13.81□□□□□ -0.2
TPM3-212ENST00000368533 XRN1Q8IZH2 1706 aaKnown RBP13.81□□□□□ -0.2
TPM3-212ENST00000368533 C20orf194Q5TEA3 1177 aa13.81□□□□□ -0.2
TPM3-212ENST00000368533 SLFN5Q08AF3 891 aa13.8□□□□□ -0.2
TPM3-212ENST00000368533 PDE3BQ13370 1112 aa13.8□□□□□ -0.2
TPM3-212ENST00000368533 ZNF521Q96K83 1311 aa13.8□□□□□ -0.2
TPM3-212ENST00000368533 BCAR3O75815 825 aa13.8□□□□□ -0.2
TPM3-212ENST00000368533 RIPK4P57078 832 aa13.8□□□□□ -0.2
TPM3-212ENST00000368533 NALCNQ8IZF0 1738 aa13.79□□□□□ -0.2
TPM3-212ENST00000368533 AMPHP49418 695 aa13.79□□□□□ -0.2
TPM3-212ENST00000368533 CHD2O14647 1828 aaKnown RBP13.79□□□□□ -0.2
TPM3-212ENST00000368533 DCTN1Q14203 1278 aa13.79□□□□□ -0.2
TPM3-212ENST00000368533 MAP3K19Q56UN5 1328 aa13.78□□□□□ -0.2
TPM3-212ENST00000368533 TMPOP42166 694 aaKnown RBP13.78□□□□□ -0.2
TPM3-212ENST00000368533 SULT6B1Q6IMI4 303 aa13.78□□□□□ -0.2
TPM3-212ENST00000368533 PKNOX2Q96KN3 472 aa13.78□□□□□ -0.2
TPM3-212ENST00000368533 EIF4A2Q14240 407 aaKnown RBP13.78□□□□□ -0.2
TPM3-212ENST00000368533 PIK3R4Q99570 1358 aa13.77□□□□□ -0.2
TPM3-212ENST00000368533 FAM83GA6ND36 823 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms