RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TOM1O60784 492 aa12.45□□□□□ -0.42
USP4-202ENST00000351842 AMER1Q5JTC6 1135 aaPredicted RBP12.45□□□□□ -0.42
USP4-202ENST00000351842 COG3Q96JB2 828 aa12.45□□□□□ -0.42
USP4-202ENST00000351842 CERKQ8TCT0 537 aa12.44□□□□□ -0.42
USP4-202ENST00000351842 TTC21BQ7Z4L5 1316 aa12.44□□□□□ -0.42
USP4-202ENST00000351842 ANKRD36BQ8N2N9 1353 aa12.44□□□□□ -0.42
USP4-202ENST00000351842 NKTRP30414 1462 aaKnown RBP12.43□□□□□ -0.42
USP4-202ENST00000351842 ADAMTS2O95450 1211 aa12.43□□□□□ -0.42
USP4-202ENST00000351842 EMILIN1Q9Y6C2 1016 aa12.43□□□□□ -0.42
USP4-202ENST00000351842 C1orf167Q5SNV9 1468 aa12.43□□□□□ -0.42
USP4-202ENST00000351842 U2SURPO15042 1029 aaKnown RBP12.43□□□□□ -0.42
USP4-202ENST00000351842 CHRNA2Q15822 529 aa12.43□□□□□ -0.42
USP4-202ENST00000351842 MTHFSP49914 203 aa12.42□□□□□ -0.42
USP4-202ENST00000351842 ZNF692Q9BU19 519 aaPredicted RBP12.42□□□□□ -0.42
USP4-202ENST00000351842 PLEKHG3A1L390 1219 aa12.41□□□□□ -0.42
USP4-202ENST00000351842 MST1RQ04912 1400 aa12.4□□□□□ -0.42
USP4-202ENST00000351842 NPHP3Q7Z494 1330 aa12.4□□□□□ -0.42
USP4-202ENST00000351842 USP35Q9P2H5 1018 aa12.4□□□□□ -0.42
USP4-202ENST00000351842 PPP2R1AP30153 589 aa12.39□□□□□ -0.43
USP4-202ENST00000351842 AMPHP49418 695 aa12.39□□□□□ -0.43
USP4-202ENST00000351842 KNDC1Q76NI1 1749 aa12.39□□□□□ -0.43
USP4-202ENST00000351842 NEUROD2Q15784 382 aa12.39□□□□□ -0.43
USP4-202ENST00000351842 CCDC146Q8IYE0 955 aa12.38□□□□□ -0.43
USP4-202ENST00000351842 CD163L1Q9NR16 1453 aa12.38□□□□□ -0.43
USP4-202ENST00000351842 USP6P35125 1406 aa12.38□□□□□ -0.43
USP4-202ENST00000351842 MYOM1P52179 1685 aa12.36□□□□□ -0.43
USP4-202ENST00000351842 HMOX1P09601 288 aa12.36□□□□□ -0.43
USP4-202ENST00000351842 HSP90AB2PQ58FF8 381 aa12.36□□□□□ -0.43
USP4-202ENST00000351842 NLRP13Q86W25 1043 aa12.36□□□□□ -0.43
USP4-202ENST00000351842 STRN4Q9NRL3 753 aa12.36□□□□□ -0.43
USP4-202ENST00000351842 NWD1Q149M9 1564 aa12.36□□□□□ -0.43
USP4-202ENST00000351842 USP32Q8NFA0 1604 aa12.36□□□□□ -0.43
USP4-202ENST00000351842 MYBBP1AQ9BQG0 1328 aaKnown RBP12.35□□□□□ -0.43
USP4-202ENST00000351842 WDR43Q15061 677 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP4-202ENST00000351842 RALBP1Q15311 655 aa12.35□□□□□ -0.43
USP4-202ENST00000351842 USHBP1Q8N6Y0 703 aa12.35□□□□□ -0.43
USP4-202ENST00000351842 U2AF1L5P0DN76 240 aaPredicted RBP12.35□□□□□ -0.43
USP4-202ENST00000351842 CSB-PGBD3P0DP91 1061 aa12.35□□□□□ -0.43
USP4-202ENST00000351842 HSPA1LP34931 641 aa12.35□□□□□ -0.43
USP4-202ENST00000351842 U2AF1Q01081 240 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP4-202ENST00000351842 HNRNPUQ00839 825 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP4-202ENST00000351842 GCP02774 474 aa12.34□□□□□ -0.43
USP4-202ENST00000351842 PUS7Q96PZ0 661 aaKnown RBP12.34□□□□□ -0.43
USP4-202ENST00000351842 PRDM11Q9NQV5 511 aa12.34□□□□□ -0.43
USP4-202ENST00000351842 EDC4Q6P2E9 1401 aaKnown RBP12.34□□□□□ -0.43
USP4-202ENST00000351842 CDC42BPGQ6DT37 1551 aa12.34□□□□□ -0.43
USP4-202ENST00000351842 LTBP4Q8N2S1 1624 aa12.34□□□□□ -0.43
USP4-202ENST00000351842 XIRP1Q702N8 1843 aaKnown RBP12.33□□□□□ -0.44
USP4-202ENST00000351842 NINLQ9Y2I6 1382 aa12.33□□□□□ -0.44
USP4-202ENST00000351842 CPSF1Q10570 1443 aaKnown RBP12.33□□□□□ -0.44
USP4-202ENST00000351842 CCDC9Q9Y3X0 531 aaKnown RBP12.33□□□□□ -0.44
USP4-202ENST00000351842 ANKARQ7Z5J8 1434 aa12.33□□□□□ -0.44
USP4-202ENST00000351842 POLKQ9UBT6 870 aa12.33□□□□□ -0.44
USP4-202ENST00000351842 RRP7AQ9Y3A4 280 aaKnown RBP12.33□□□□□ -0.44
USP4-202ENST00000351842 FMN2Q9NZ56 1722 aa12.32□□□□□ -0.44
USP4-202ENST00000351842 MAP3K19Q56UN5 1328 aa12.32□□□□□ -0.44
USP4-202ENST00000351842 A0A0G2JS52 829 aa12.32□□□□□ -0.44
USP4-202ENST00000351842 LRRC59Q96AG4 307 aaKnown RBP12.31□□□□□ -0.44
USP4-202ENST00000351842 CFAP53Q96M91 514 aa12.31□□□□□ -0.44
USP4-202ENST00000351842 POLR3AO14802 1390 aaPredicted RBP12.31□□□□□ -0.44
USP4-202ENST00000351842 C8orf37Q96NL8 207 aa12.3□□□□□ -0.44
USP4-202ENST00000351842 ADAMTS8Q9UP79 889 aa12.3□□□□□ -0.44
USP4-202ENST00000351842 ADGRB2O60241 1585 aa12.3□□□□□ -0.44
USP4-202ENST00000351842 SPATA31A3Q5VYP0 1347 aa12.3□□□□□ -0.44
USP4-202ENST00000351842 MEX3CQ5U5Q3 659 aaKnown RBP12.3□□□□□ -0.44
USP4-202ENST00000351842 PARD3Q8TEW0 1356 aa12.29□□□□□ -0.44
USP4-202ENST00000351842 TTC21AQ8NDW8 1320 aa12.29□□□□□ -0.44
USP4-202ENST00000351842 NLRP2Q9NX02 1062 aa12.29□□□□□ -0.44
USP4-202ENST00000351842 ITSN1Q15811 1721 aa12.28□□□□□ -0.44
USP4-202ENST00000351842 EVA1CP58658 441 aa12.28□□□□□ -0.44
USP4-202ENST00000351842 AEBP1Q8IUX7 1158 aa12.28□□□□□ -0.44
USP4-202ENST00000351842 AXIN2Q9Y2T1 843 aa12.28□□□□□ -0.44
USP4-202ENST00000351842 DCCP43146 1447 aa12.28□□□□□ -0.44
USP4-202ENST00000351842 DIAPH1O60610 1272 aaKnown RBP12.28□□□□□ -0.44
USP4-202ENST00000351842 KAT6BQ8WYB5 2073 aa12.28□□□□□ -0.44
USP4-202ENST00000351842 KIAA0232Q92628 1395 aa12.27□□□□□ -0.44
USP4-202ENST00000351842 ROBO1Q9Y6N7 1651 aa12.26□□□□□ -0.45
USP4-202ENST00000351842 SULT6B1Q6IMI4 303 aa12.26□□□□□ -0.45
USP4-202ENST00000351842 NGLY1Q96IV0 654 aa12.26□□□□□ -0.45
USP4-202ENST00000351842 SOS2Q07890 1332 aaPredicted RBP12.26□□□□□ -0.45
USP4-202ENST00000351842 NCOA3Q9Y6Q9 1424 aa12.26□□□□□ -0.45
USP4-202ENST00000351842 BTG4Q9NY30 223 aa12.25□□□□□ -0.45
USP4-202ENST00000351842 SRCAPQ6ZRS2 3230 aa12.25□□□□□ -0.45
USP4-202ENST00000351842 NUDCQ9Y266 331 aa12.24□□□□□ -0.45
USP4-202ENST00000351842 EP400Q96L91 3159 aa12.24□□□□□ -0.45
USP4-202ENST00000351842 TNS3Q68CZ2 1445 aa12.24□□□□□ -0.45
USP4-202ENST00000351842 CCER2I3L3R5 266 aa12.24□□□□□ -0.45
USP4-202ENST00000351842 HOXC9P31274 260 aa12.24□□□□□ -0.45
USP4-202ENST00000351842 EIF4A2Q14240 407 aaKnown RBP12.24□□□□□ -0.45
USP4-202ENST00000351842 TOM1L2Q6ZVM7 507 aa12.24□□□□□ -0.45
USP4-202ENST00000351842 KCNH5Q8NCM2 988 aa12.24□□□□□ -0.45
USP4-202ENST00000351842 PNISRQ8TF01 805 aaKnown RBP12.24□□□□□ -0.45
USP4-202ENST00000351842 FAM83GA6ND36 823 aa12.23□□□□□ -0.45
USP4-202ENST00000351842 APAF1O14727 1248 aa12.23□□□□□ -0.45
USP4-202ENST00000351842 ANKRD24Q8TF21 1146 aa12.23□□□□□ -0.45
USP4-202ENST00000351842 PRKAR2BP31323 418 aa12.22□□□□□ -0.45
USP4-202ENST00000351842 CENPBP07199 599 aaPredicted RBP12.22□□□□□ -0.45
USP4-202ENST00000351842 TOPAZ1Q8N9V7 1692 aa12.22□□□□□ -0.45
USP4-202ENST00000351842 SSH2Q76I76 1423 aa12.22□□□□□ -0.45
USP4-202ENST00000351842 NSD2O96028 1365 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms