RNA–Protein interactions for RNA: ENST00000347559.6

LMNA-201, Transcript of lamin A/C, humanhuman

TSL 5 BASIC

Gene LMNA, Length 3,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-201ENST00000347559 SYCE3A1L190 88 aa18.95■□□□□ 0.62
LMNA-201ENST00000347559 CFAP53Q96M91 514 aa18.95■□□□□ 0.62
LMNA-201ENST00000347559 C1orf115Q9H7X2 142 aa18.95■□□□□ 0.62
LMNA-201ENST00000347559 KIF16BQ96L93 1317 aa18.95■□□□□ 0.62
LMNA-201ENST00000347559 SCAPERQ9BY12 1400 aa18.94■□□□□ 0.62
LMNA-201ENST00000347559 CCDC39Q9UFE4 941 aa18.94■□□□□ 0.62
LMNA-201ENST00000347559 RNF17Q9BXT8 1623 aaKnown RBP18.93■□□□□ 0.62
LMNA-201ENST00000347559 CBX1P83916 185 aa18.93■□□□□ 0.62
LMNA-201ENST00000347559 RSPH4AQ5TD94 716 aa18.93■□□□□ 0.62
LMNA-201ENST00000347559 JPH4Q96JJ6 628 aa18.93■□□□□ 0.62
LMNA-201ENST00000347559 CCDC94Q9BW85 323 aaPredicted RBP18.93■□□□□ 0.62
LMNA-201ENST00000347559 SLC12A5Q9H2X9 1139 aa18.93■□□□□ 0.62
LMNA-201ENST00000347559 MYOM1P52179 1685 aa18.93■□□□□ 0.62
LMNA-201ENST00000347559 NUCB2P80303 420 aa18.92■□□□□ 0.62
LMNA-201ENST00000347559 ATP10BO94823 1461 aa18.92■□□□□ 0.62
LMNA-201ENST00000347559 U2SURPO15042 1029 aaKnown RBP18.92■□□□□ 0.62
LMNA-201ENST00000347559 FAM177BA6PVY3 158 aa18.91■□□□□ 0.62
LMNA-201ENST00000347559 CLEC17AQ6ZS10 378 aa18.91■□□□□ 0.62
LMNA-201ENST00000347559 GPT2Q8TD30 523 aa18.91■□□□□ 0.62
LMNA-201ENST00000347559 NSD3Q9BZ95 1437 aa18.91■□□□□ 0.62
LMNA-201ENST00000347559 CCDC27Q2M243 656 aa18.91■□□□□ 0.62
LMNA-201ENST00000347559 GRIN2AQ12879 1464 aa18.91■□□□□ 0.62
LMNA-201ENST00000347559 ARHGEF5Q12774 1597 aa18.9■□□□□ 0.62
LMNA-201ENST00000347559 CARMIL2Q6F5E8 1435 aa18.9■□□□□ 0.62
LMNA-201ENST00000347559 IQGAP1P46940 1657 aa18.89■□□□□ 0.62
LMNA-201ENST00000347559 DMTNQ08495 405 aa18.89■□□□□ 0.62
LMNA-201ENST00000347559 TMEM63CQ9P1W3 806 aa18.89■□□□□ 0.62
LMNA-201ENST00000347559 ZGPATQ8N5A5 531 aaKnown RBP18.89■□□□□ 0.61
LMNA-201ENST00000347559 NSFL1CQ9UNZ2 370 aaKnown RBP18.89■□□□□ 0.61
LMNA-201ENST00000347559 IQSEC2Q5JU85 1478 aa18.88■□□□□ 0.61
LMNA-201ENST00000347559 ZSCAN20P17040 1043 aaPredicted RBP18.88■□□□□ 0.61
LMNA-201ENST00000347559 MCM5P33992 734 aa18.88■□□□□ 0.61
LMNA-201ENST00000347559 KDM5AP29375 1690 aaKnown RBP18.88■□□□□ 0.61
LMNA-201ENST00000347559 MADDQ8WXG6 1647 aa18.87■□□□□ 0.61
LMNA-201ENST00000347559 IPO8O15397 1037 aaKnown RBP18.87■□□□□ 0.61
LMNA-201ENST00000347559 KIAA2012Q0VF49 1180 aa18.87■□□□□ 0.61
LMNA-201ENST00000347559 LRSAM1Q6UWE0 723 aa18.87■□□□□ 0.61
LMNA-201ENST00000347559 ZNF830Q96NB3 372 aaPredicted RBP18.87■□□□□ 0.61
LMNA-201ENST00000347559 ERVK-7P63135 1459 aa18.87■□□□□ 0.61
LMNA-201ENST00000347559 SYCP2Q9BX26 1530 aa18.86■□□□□ 0.61
LMNA-201ENST00000347559 SAMD9LQ8IVG5 1584 aa18.86■□□□□ 0.61
LMNA-201ENST00000347559 CDC45O75419 566 aa18.86■□□□□ 0.61
LMNA-201ENST00000347559 FGD1P98174 961 aa18.86■□□□□ 0.61
LMNA-201ENST00000347559 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.86■□□□□ 0.61
LMNA-201ENST00000347559 CT47B1P0C2W7 299 aaPredicted RBP18.85■□□□□ 0.61
LMNA-201ENST00000347559 RABEP1Q15276 862 aa18.85■□□□□ 0.61
LMNA-201ENST00000347559 TPRNQ4KMQ1 711 aa18.85■□□□□ 0.61
LMNA-201ENST00000347559 KANK1Q14678 1352 aa18.85■□□□□ 0.61
LMNA-201ENST00000347559 UNC13BO14795 1591 aa18.84■□□□□ 0.61
LMNA-201ENST00000347559 FOXD4L6Q3SYB3 417 aaPredicted RBP18.84■□□□□ 0.61
LMNA-201ENST00000347559 FOXD4L3Q6VB84 417 aaPredicted RBP18.84■□□□□ 0.61
LMNA-201ENST00000347559 C17orf53Q8N3J3 647 aaPredicted RBP18.83■□□□□ 0.61
LMNA-201ENST00000347559 UTP14CQ5TAP6 766 aaKnown RBP18.83■□□□□ 0.6
LMNA-201ENST00000347559 MYRIPQ8NFW9 859 aa18.83■□□□□ 0.6
LMNA-201ENST00000347559 TRAK1Q9UPV9 953 aa18.83■□□□□ 0.6
LMNA-201ENST00000347559 PPP4R3BQ5MIZ7 849 aa18.83■□□□□ 0.6
LMNA-201ENST00000347559 TMPOP42166 694 aaKnown RBP18.82■□□□□ 0.6
LMNA-201ENST00000347559 ATP10AO60312 1499 aa18.82■□□□□ 0.6
LMNA-201ENST00000347559 CEP152O94986 1710 aa18.82■□□□□ 0.6
LMNA-201ENST00000347559 SPDYE4A6NLX3 237 aa18.82■□□□□ 0.6
LMNA-201ENST00000347559 CYP2E1P05181 493 aaPredicted RBP18.82■□□□□ 0.6
LMNA-201ENST00000347559 ADGRF5Q8IZF2 1346 aa18.81■□□□□ 0.6
LMNA-201ENST00000347559 SHPRHQ149N8 1683 aa18.81■□□□□ 0.6
LMNA-201ENST00000347559 IQGAP3Q86VI3 1631 aa18.81■□□□□ 0.6
LMNA-201ENST00000347559 SLC24A1O60721 1099 aa18.81■□□□□ 0.6
LMNA-201ENST00000347559 IGSF3O75054 1194 aa18.81■□□□□ 0.6
LMNA-201ENST00000347559 ZNF710Q8N1W2 664 aa18.81■□□□□ 0.6
LMNA-201ENST00000347559 GCC1Q96CN9 775 aa18.81■□□□□ 0.6
LMNA-201ENST00000347559 TRIM35Q9UPQ4 493 aa18.8■□□□□ 0.6
LMNA-201ENST00000347559 ZDHHC9Q9Y397 364 aa18.8■□□□□ 0.6
LMNA-201ENST00000347559 ATP2B3Q16720 1220 aa18.8■□□□□ 0.6
LMNA-201ENST00000347559 ARHGAP5Q13017 1502 aa18.79■□□□□ 0.6
LMNA-201ENST00000347559 GSPT1P15170 499 aaKnown RBP18.79■□□□□ 0.6
LMNA-201ENST00000347559 ABCA8O94911 1581 aa18.79■□□□□ 0.6
LMNA-201ENST00000347559 PPIP5K1Q6PFW1 1433 aa18.79■□□□□ 0.6
LMNA-201ENST00000347559 TSPY26PQ9H489 355 aa18.78■□□□□ 0.6
LMNA-201ENST00000347559 ELL2O00472 640 aaPredicted RBP18.78■□□□□ 0.6
LMNA-201ENST00000347559 IFT140Q96RY7 1462 aa18.78■□□□□ 0.6
LMNA-201ENST00000347559 APBB1O00213 710 aa18.78■□□□□ 0.6
LMNA-201ENST00000347559 ST18O60284 1047 aa18.78■□□□□ 0.6
LMNA-201ENST00000347559 TTC12Q9H892 705 aaPredicted RBP18.78■□□□□ 0.6
LMNA-201ENST00000347559 CWC22Q9HCG8 908 aaKnown RBP18.78■□□□□ 0.6
LMNA-201ENST00000347559 TTC37Q6PGP7 1564 aa18.77■□□□□ 0.6
LMNA-201ENST00000347559 ZNF518AQ6AHZ1 1483 aa18.77■□□□□ 0.6
LMNA-201ENST00000347559 BBXQ8WY36 941 aaPredicted RBP18.77■□□□□ 0.6
LMNA-201ENST00000347559 CHGAP10645 457 aaKnown RBP18.76■□□□□ 0.59
LMNA-201ENST00000347559 PLCB2Q00722 1185 aa18.76■□□□□ 0.59
LMNA-201ENST00000347559 MAST1Q9Y2H9 1570 aa18.76■□□□□ 0.59
LMNA-201ENST00000347559 ZBTB7BO15156 539 aaPredicted RBP18.76■□□□□ 0.59
LMNA-201ENST00000347559 NOLC1Q14978 699 aaKnown RBP eCLIP18.76■□□□□ 0.59
LMNA-201ENST00000347559 NOL8Q76FK4 1167 aaKnown RBP18.76■□□□□ 0.59
LMNA-201ENST00000347559 SHROOM2Q13796 1616 aa18.76■□□□□ 0.59
LMNA-201ENST00000347559 SIRT2Q8IXJ6 389 aa18.76■□□□□ 0.59
LMNA-201ENST00000347559 C16orf71Q8IYS4 520 aaPredicted RBP18.76■□□□□ 0.59
LMNA-201ENST00000347559 USP26Q9BXU7 913 aa18.76■□□□□ 0.59
LMNA-201ENST00000347559 STAC3Q96MF2 364 aa18.75■□□□□ 0.59
LMNA-201ENST00000347559 KIF3AQ9Y496 699 aa18.75■□□□□ 0.59
LMNA-201ENST00000347559 PTPRTO14522 1441 aa18.75■□□□□ 0.59
LMNA-201ENST00000347559 NOS1P29475 1434 aa18.75■□□□□ 0.59
LMNA-201ENST00000347559 CFAP74Q9C0B2 1584 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms