RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 TRPM3Q9HCF6 1732 aaPredicted RBP26■■□□□ 1.75
CHMP4A-201ENST00000347519 ROBO1Q9Y6N7 1651 aa26■■□□□ 1.75
CHMP4A-201ENST00000347519 FYB1O15117 783 aa25.98■■□□□ 1.75
CHMP4A-201ENST00000347519 PSME1Q06323 249 aa25.98■■□□□ 1.75
CHMP4A-201ENST00000347519 ILDR2Q71H61 639 aa25.98■■□□□ 1.75
CHMP4A-201ENST00000347519 NME9Q86XW9 330 aa25.98■■□□□ 1.75
CHMP4A-201ENST00000347519 ZRANB1Q9UGI0 708 aa25.98■■□□□ 1.75
CHMP4A-201ENST00000347519 NPC1L1Q9UHC9 1359 aa25.98■■□□□ 1.75
CHMP4A-201ENST00000347519 CGNL1Q0VF96 1302 aa25.97■■□□□ 1.75
CHMP4A-201ENST00000347519 NHSL1Q5SYE7 1610 aa25.97■■□□□ 1.75
CHMP4A-201ENST00000347519 ANKRD26Q9UPS8 1709 aa25.97■■□□□ 1.75
CHMP4A-201ENST00000347519 KRT28Q7Z3Y7 464 aa25.96■■□□□ 1.75
CHMP4A-201ENST00000347519 MIER1Q8N108 512 aa25.96■■□□□ 1.75
CHMP4A-201ENST00000347519 PXDNQ92626 1479 aa25.96■■□□□ 1.75
CHMP4A-201ENST00000347519 PIK3C2AO00443 1686 aa25.96■■□□□ 1.75
CHMP4A-201ENST00000347519 GGNBP2Q9H3C7 697 aa25.95■■□□□ 1.75
CHMP4A-201ENST00000347519 PRKRIP1Q9H875 184 aaPredicted RBP25.95■■□□□ 1.75
CHMP4A-201ENST00000347519 ANP32CO43423 234 aa25.95■■□□□ 1.74
CHMP4A-201ENST00000347519 NPHP3Q7Z494 1330 aa25.93■■□□□ 1.74
CHMP4A-201ENST00000347519 MARF1Q9Y4F3 1742 aaKnown RBP25.93■■□□□ 1.74
CHMP4A-201ENST00000347519 PARD3Q8TEW0 1356 aa25.92■■□□□ 1.74
CHMP4A-201ENST00000347519 TTC21AQ8NDW8 1320 aa25.92■■□□□ 1.74
CHMP4A-201ENST00000347519 PAK3O75914 559 aaPredicted RBP25.92■■□□□ 1.74
CHMP4A-201ENST00000347519 BRD4O60885 1362 aaPredicted RBP25.92■■□□□ 1.74
CHMP4A-201ENST00000347519 SCAF1Q9H7N4 1312 aaKnown RBP25.91■■□□□ 1.74
CHMP4A-201ENST00000347519 PIP4K2BP78356 416 aa25.91■■□□□ 1.74
CHMP4A-201ENST00000347519 NSD2O96028 1365 aa25.91■■□□□ 1.74
CHMP4A-201ENST00000347519 ALS2Q96Q42 1657 aa25.9■■□□□ 1.74
CHMP4A-201ENST00000347519 SOS2Q07890 1332 aaPredicted RBP25.89■■□□□ 1.73
CHMP4A-201ENST00000347519 AHDC1Q5TGY3 1603 aaPredicted RBP25.88■■□□□ 1.73
CHMP4A-201ENST00000347519 NUTM2GQ5VZR2 741 aa25.87■■□□□ 1.73
CHMP4A-201ENST00000347519 OVOS2A0A0J9YW53 1432 aa25.87■■□□□ 1.73
CHMP4A-201ENST00000347519 OVOS2Q6IE36 1432 aa25.87■■□□□ 1.73
CHMP4A-201ENST00000347519 USP54Q70EL1 1684 aa25.87■■□□□ 1.73
CHMP4A-201ENST00000347519 SBNO1A3KN83 1393 aa25.86■■□□□ 1.73
CHMP4A-201ENST00000347519 MORC1Q86VD1 984 aa25.86■■□□□ 1.73
CHMP4A-201ENST00000347519 USP31Q70CQ4 1352 aa25.86■■□□□ 1.73
CHMP4A-201ENST00000347519 RALBP1Q15311 655 aa25.85■■□□□ 1.73
CHMP4A-201ENST00000347519 ABTB2Q8N961 1025 aa25.85■■□□□ 1.73
CHMP4A-201ENST00000347519 TNNT2P45379 298 aaPredicted RBP25.83■■□□□ 1.73
CHMP4A-201ENST00000347519 SPATA31A3Q5VYP0 1347 aa25.83■■□□□ 1.73
CHMP4A-201ENST00000347519 TNS3Q68CZ2 1445 aa25.83■■□□□ 1.73
CHMP4A-201ENST00000347519 PHLPP1O60346 1717 aa25.82■■□□□ 1.72
CHMP4A-201ENST00000347519 HSPA1LP34931 641 aa25.82■■□□□ 1.72
CHMP4A-201ENST00000347519 NLRP6P59044 892 aa25.82■■□□□ 1.72
CHMP4A-201ENST00000347519 FBLN1P23142 703 aa25.82■■□□□ 1.72
CHMP4A-201ENST00000347519 COG3Q96JB2 828 aa25.82■■□□□ 1.72
CHMP4A-201ENST00000347519 LMOD2Q6P5Q4 547 aa25.81■■□□□ 1.72
CHMP4A-201ENST00000347519 PPP2R1AP30153 589 aa25.8■■□□□ 1.72
CHMP4A-201ENST00000347519 COL16A1Q07092 1604 aaPredicted RBP25.79■■□□□ 1.72
CHMP4A-201ENST00000347519 CCDC184Q52MB2 194 aa25.79■■□□□ 1.72
CHMP4A-201ENST00000347519 MYBBP1AQ9BQG0 1328 aaKnown RBP25.79■■□□□ 1.72
CHMP4A-201ENST00000347519 MED1Q15648 1581 aaPredicted RBP25.78■■□□□ 1.72
CHMP4A-201ENST00000347519 CRYBG1Q9Y4K1 1723 aa25.77■■□□□ 1.72
CHMP4A-201ENST00000347519 MAP2P11137 1827 aaKnown RBP25.76■■□□□ 1.71
CHMP4A-201ENST00000347519 PLEKHG5O94827 1062 aa25.76■■□□□ 1.71
CHMP4A-201ENST00000347519 SLIT3O75094 1523 aa25.75■■□□□ 1.71
CHMP4A-201ENST00000347519 USP19O94966 1318 aa25.74■■□□□ 1.71
CHMP4A-201ENST00000347519 SOX12O15370 315 aa25.74■■□□□ 1.71
CHMP4A-201ENST00000347519 NLRP13Q86W25 1043 aa25.74■■□□□ 1.71
CHMP4A-201ENST00000347519 PHRF1Q9P1Y6 1649 aaKnown RBP25.73■■□□□ 1.71
CHMP4A-201ENST00000347519 ARHGEF10O15013 1369 aa25.73■■□□□ 1.71
CHMP4A-201ENST00000347519 NFAT5O94916 1531 aa25.72■■□□□ 1.71
CHMP4A-201ENST00000347519 SOCS7O14512 581 aa25.72■■□□□ 1.71
CHMP4A-201ENST00000347519 CABLES1Q8TDN4 633 aa25.71■■□□□ 1.71
CHMP4A-201ENST00000347519 AATKQ6ZMQ8 1374 aa25.71■■□□□ 1.71
CHMP4A-201ENST00000347519 ABCA3Q99758 1704 aa25.7■■□□□ 1.7
CHMP4A-201ENST00000347519 CCER2I3L3R5 266 aa25.69■■□□□ 1.7
CHMP4A-201ENST00000347519 RRS1Q15050 365 aaKnown RBP25.69■■□□□ 1.7
CHMP4A-201ENST00000347519 LRRC59Q96AG4 307 aaKnown RBP25.69■■□□□ 1.7
CHMP4A-201ENST00000347519 POLKQ9UBT6 870 aa25.69■■□□□ 1.7
CHMP4A-201ENST00000347519 PEAK1Q9H792 1746 aa25.69■■□□□ 1.7
CHMP4A-201ENST00000347519 MTHFSP49914 203 aa25.69■■□□□ 1.7
CHMP4A-201ENST00000347519 EMILIN1Q9Y6C2 1016 aa25.68■■□□□ 1.7
CHMP4A-201ENST00000347519 GCP02774 474 aa25.67■■□□□ 1.7
CHMP4A-201ENST00000347519 PNPLA6Q8IY17 1366 aa25.67■■□□□ 1.7
CHMP4A-201ENST00000347519 LTN1O94822 1766 aa25.66■■□□□ 1.7
CHMP4A-201ENST00000347519 COL22A1Q8NFW1 1626 aaPredicted RBP25.66■■□□□ 1.7
CHMP4A-201ENST00000347519 SMG6Q86US8 1419 aaKnown RBP25.65■■□□□ 1.7
CHMP4A-201ENST00000347519 MAP3K19Q56UN5 1328 aa25.64■■□□□ 1.7
CHMP4A-201ENST00000347519 MRS2Q9HD23 443 aa25.64■■□□□ 1.69
CHMP4A-201ENST00000347519 KCNH5Q8NCM2 988 aa25.63■■□□□ 1.69
CHMP4A-201ENST00000347519 COL3A1P02461 1466 aaPredicted RBP25.61■■□□□ 1.69
CHMP4A-201ENST00000347519 PPM1GO15355 546 aaPredicted RBP25.6■■□□□ 1.69
CHMP4A-201ENST00000347519 SHPRHQ149N8 1683 aa25.6■■□□□ 1.69
CHMP4A-201ENST00000347519 ZC3H6P61129 1189 aaKnown RBP25.59■■□□□ 1.69
CHMP4A-201ENST00000347519 CDK12Q9NYV4 1490 aaPredicted RBP25.59■■□□□ 1.69
CHMP4A-201ENST00000347519 ARHGEF25Q86VW2 580 aa25.58■■□□□ 1.69
CHMP4A-201ENST00000347519 ZBTB7CA1YPR0 619 aa25.56■■□□□ 1.68
CHMP4A-201ENST00000347519 COL18A1P39060 1754 aa25.56■■□□□ 1.68
CHMP4A-201ENST00000347519 RGPD5Q99666 1765 aa25.56■■□□□ 1.68
CHMP4A-201ENST00000347519 INSRP06213 1382 aa25.55■■□□□ 1.68
CHMP4A-201ENST00000347519 KIAA0232Q92628 1395 aa25.55■■□□□ 1.68
CHMP4A-201ENST00000347519 HOXC9P31274 260 aa25.54■■□□□ 1.68
CHMP4A-201ENST00000347519 AMPHP49418 695 aa25.54■■□□□ 1.68
CHMP4A-201ENST00000347519 HSP90AB2PQ58FF8 381 aa25.54■■□□□ 1.68
CHMP4A-201ENST00000347519 PNISRQ8TF01 805 aaKnown RBP25.54■■□□□ 1.68
CHMP4A-201ENST00000347519 JCADQ9P266 1359 aa25.54■■□□□ 1.68
CHMP4A-201ENST00000347519 CPDO75976 1380 aa25.53■■□□□ 1.68
CHMP4A-201ENST00000347519 FLT4P35916 1363 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms