RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SUPT5HO00267 1087 aaKnown RBP6.64□□□□□ -1.35
HMGB1-201ENST00000326004 GPR37L1O60883 481 aa6.64□□□□□ -1.35
HMGB1-201ENST00000326004 IRF5Q13568 498 aa6.64□□□□□ -1.35
HMGB1-201ENST00000326004 IFFO2Q5TF58 517 aa6.64□□□□□ -1.35
HMGB1-201ENST00000326004 CCDC24Q8N4L8 307 aa6.64□□□□□ -1.35
HMGB1-201ENST00000326004 NBPF14Q5TI25 921 aa6.63□□□□□ -1.35
HMGB1-201ENST00000326004 FCF1Q9Y324 198 aaKnown RBP6.63□□□□□ -1.35
HMGB1-201ENST00000326004 ANKLE1Q8NAG6 615 aa6.62□□□□□ -1.35
HMGB1-201ENST00000326004 UNC93B1Q9H1C4 597 aa6.62□□□□□ -1.35
HMGB1-201ENST00000326004 PDXDC2PQ6P474 469 aa6.61□□□□□ -1.35
HMGB1-201ENST00000326004 GPSM3Q9Y4H4 160 aa6.61□□□□□ -1.35
HMGB1-201ENST00000326004 ZBBXA8MT70 800 aa6.6□□□□□ -1.35
HMGB1-201ENST00000326004 RNF223E7ERA6 249 aa6.6□□□□□ -1.35
HMGB1-201ENST00000326004 SOX11P35716 441 aa6.6□□□□□ -1.35
HMGB1-201ENST00000326004 NR1H3Q13133 447 aa6.6□□□□□ -1.35
HMGB1-201ENST00000326004 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.6□□□□□ -1.35
HMGB1-201ENST00000326004 ZNF777Q9ULD5 760 aaPredicted RBP6.6□□□□□ -1.35
HMGB1-201ENST00000326004 ZBTB24O43167 697 aaPredicted RBP6.59□□□□□ -1.35
HMGB1-201ENST00000326004 PTK2Q05397 1052 aa6.59□□□□□ -1.35
HMGB1-201ENST00000326004 PTCRAQ6ISU1 281 aaPredicted RBP6.59□□□□□ -1.35
HMGB1-201ENST00000326004 PPP1R18Q6NYC8 613 aa6.59□□□□□ -1.35
HMGB1-201ENST00000326004 ZNF592Q92610 1267 aa6.59□□□□□ -1.35
HMGB1-201ENST00000326004 ARID3CA6NKF2 412 aa6.58□□□□□ -1.36
HMGB1-201ENST00000326004 PPEF1O14829 653 aaPredicted RBP6.58□□□□□ -1.36
HMGB1-201ENST00000326004 EIF4G2P78344 907 aaKnown RBP eCLIP6.58□□□□□ -1.36
HMGB1-201ENST00000326004 VAC14Q08AM6 782 aa6.58□□□□□ -1.36
HMGB1-201ENST00000326004 POM121CA8CG34 1229 aa6.57□□□□□ -1.36
HMGB1-201ENST00000326004 FBXO45P0C2W1 286 aa6.57□□□□□ -1.36
HMGB1-201ENST00000326004 RPIAP49247 311 aa6.57□□□□□ -1.36
HMGB1-201ENST00000326004 C1orf115Q9H7X2 142 aa6.57□□□□□ -1.36
HMGB1-201ENST00000326004 MCCD1P59942 119 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-201ENST00000326004 GLMNQ92990 594 aa6.56□□□□□ -1.36
HMGB1-201ENST00000326004 CCDC97Q96F63 343 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-201ENST00000326004 CALR3Q96L12 384 aaKnown RBP6.56□□□□□ -1.36
HMGB1-201ENST00000326004 ARHGAP9Q9BRR9 750 aa6.56□□□□□ -1.36
HMGB1-201ENST00000326004 SERPINA10Q9UK55 444 aa6.56□□□□□ -1.36
HMGB1-201ENST00000326004 TRIM32Q13049 653 aa6.55□□□□□ -1.36
HMGB1-201ENST00000326004 SEMA3FQ13275 785 aa6.55□□□□□ -1.36
HMGB1-201ENST00000326004 SH3BP5LQ7L8J4 393 aa6.55□□□□□ -1.36
HMGB1-201ENST00000326004 SH3RF1Q7Z6J0 888 aa6.55□□□□□ -1.36
HMGB1-201ENST00000326004 BPHLQ86WA6 291 aaPredicted RBP6.55□□□□□ -1.36
HMGB1-201ENST00000326004 ZNF511Q8NB15 262 aa6.55□□□□□ -1.36
HMGB1-201ENST00000326004 BAP1Q92560 729 aa6.55□□□□□ -1.36
HMGB1-201ENST00000326004 ALG2Q9H553 416 aa6.55□□□□□ -1.36
HMGB1-201ENST00000326004 PLA2G2EQ9NZK7 142 aa6.55□□□□□ -1.36
HMGB1-201ENST00000326004 WNT7BP56706 349 aa6.54□□□□□ -1.36
HMGB1-201ENST00000326004 LINC01559Q495D7 138 aa6.54□□□□□ -1.36
HMGB1-201ENST00000326004 PLA2G2CQ5R387 149 aa6.54□□□□□ -1.36
HMGB1-201ENST00000326004 HDGFL1Q5TGJ6 251 aa6.54□□□□□ -1.36
HMGB1-201ENST00000326004 ZBTB33Q86T24 672 aa6.54□□□□□ -1.36
HMGB1-201ENST00000326004 CD2BP2O95400 341 aaKnown RBP6.53□□□□□ -1.36
HMGB1-201ENST00000326004 SH3BP2P78314 561 aa6.53□□□□□ -1.36
HMGB1-201ENST00000326004 AGERQ15109 404 aa6.53□□□□□ -1.36
HMGB1-201ENST00000326004 CCDC82Q8N4S0 544 aa6.53□□□□□ -1.36
HMGB1-201ENST00000326004 OCSTAMPQ9BR26 566 aa6.53□□□□□ -1.36
HMGB1-201ENST00000326004 A0A0G2JS52 829 aa6.52□□□□□ -1.37
HMGB1-201ENST00000326004 ADAM32Q8TC27 787 aa6.52□□□□□ -1.37
HMGB1-201ENST00000326004 ADAMTS19Q8TE59 1207 aa6.52□□□□□ -1.37
HMGB1-201ENST00000326004 FOXJ1Q92949 421 aa6.52□□□□□ -1.37
HMGB1-201ENST00000326004 MAGEB6P1A0A0J9YX57 407 aa6.51□□□□□ -1.37
HMGB1-201ENST00000326004 C1QTNF2Q9BXJ5 285 aa6.51□□□□□ -1.37
HMGB1-201ENST00000326004 CARD14Q9BXL6 1004 aa6.51□□□□□ -1.37
HMGB1-201ENST00000326004 PCDHB9Q9Y5E1 797 aa6.51□□□□□ -1.37
HMGB1-201ENST00000326004 VARSP26640 1264 aaKnown RBP6.5□□□□□ -1.37
HMGB1-201ENST00000326004 ERFEQ4G0M1 354 aa6.5□□□□□ -1.37
HMGB1-201ENST00000326004 LIAT1Q6ZQX7 453 aa6.5□□□□□ -1.37
HMGB1-201ENST00000326004 DZIP3Q86Y13 1208 aaKnown RBP6.5□□□□□ -1.37
HMGB1-201ENST00000326004 TRMT44Q8IYL2 757 aaKnown RBP6.5□□□□□ -1.37
HMGB1-201ENST00000326004 CDV3Q9UKY7 258 aaKnown RBP6.5□□□□□ -1.37
HMGB1-201ENST00000326004 SLC19A1P41440 591 aa6.49□□□□□ -1.37
HMGB1-201ENST00000326004 C4orf48Q5BLP8 95 aa6.49□□□□□ -1.37
HMGB1-201ENST00000326004 SLC10A4Q96EP9 437 aa6.49□□□□□ -1.37
HMGB1-201ENST00000326004 ARID3AQ99856 593 aa6.49□□□□□ -1.37
HMGB1-201ENST00000326004 SKOR1P84550 965 aa6.48□□□□□ -1.37
HMGB1-201ENST00000326004 NFATC2IPQ8NCF5 419 aa6.48□□□□□ -1.37
HMGB1-201ENST00000326004 FAM174AQ8TBP5 190 aa6.48□□□□□ -1.37
HMGB1-201ENST00000326004 EMID1Q96A84 441 aaPredicted RBP6.48□□□□□ -1.37
HMGB1-201ENST00000326004 NBPF20Q3BBV1 942 aa6.47□□□□□ -1.37
HMGB1-201ENST00000326004 RC3H1Q5TC82 1133 aaKnown RBP6.47□□□□□ -1.37
HMGB1-201ENST00000326004 EHBP1Q8NDI1 1231 aa6.47□□□□□ -1.37
HMGB1-201ENST00000326004 ARXQ96QS3 562 aa6.47□□□□□ -1.37
HMGB1-201ENST00000326004 PPP1R12CQ9BZL4 782 aa6.47□□□□□ -1.37
HMGB1-201ENST00000326004 CEP126Q9P2H0 1117 aa6.47□□□□□ -1.37
HMGB1-201ENST00000326004 V9GY48 417 aaPredicted RBP6.47□□□□□ -1.37
HMGB1-201ENST00000326004 SLFNL1Q499Z3 407 aa6.46□□□□□ -1.38
HMGB1-201ENST00000326004 SPRYD7Q5W111 196 aa6.46□□□□□ -1.38
HMGB1-201ENST00000326004 CCDC125Q86Z20 511 aa6.46□□□□□ -1.38
HMGB1-201ENST00000326004 MPNDQ8N594 471 aa6.46□□□□□ -1.38
HMGB1-201ENST00000326004 UCN2Q96RP3 112 aa6.46□□□□□ -1.38
HMGB1-201ENST00000326004 MAP4K5Q9Y4K4 846 aa6.46□□□□□ -1.38
HMGB1-201ENST00000326004 PALM3A6NDB9 673 aaPredicted RBP6.45□□□□□ -1.38
HMGB1-201ENST00000326004 WNT7AO00755 349 aa6.45□□□□□ -1.38
HMGB1-201ENST00000326004 ATP9BO43861 1147 aa6.45□□□□□ -1.38
HMGB1-201ENST00000326004 RNF20Q5VTR2 975 aa6.45□□□□□ -1.38
HMGB1-201ENST00000326004 ZNF598Q86UK7 904 aaKnown RBP6.45□□□□□ -1.38
HMGB1-201ENST00000326004 SEPT12Q8IYM1 358 aa6.45□□□□□ -1.38
HMGB1-201ENST00000326004 PPP1R15AO75807 674 aaPredicted RBP6.44□□□□□ -1.38
HMGB1-201ENST00000326004 RNF135Q8IUD6 432 aa6.44□□□□□ -1.38
HMGB1-201ENST00000326004 PHTF2Q8N3S3 785 aa6.44□□□□□ -1.38
HMGB1-201ENST00000326004 CDK15Q96Q40 435 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms