RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CCDC73Q6ZRK6 1079 aa23.25■■□□□ 1.31
USP48-201ENST00000308271 SSH1Q8WYL5 1049 aa23.25■■□□□ 1.31
USP48-201ENST00000308271 NSD3Q9BZ95 1437 aa23.25■■□□□ 1.31
USP48-201ENST00000308271 TRIM5Q9C035 493 aa23.25■■□□□ 1.31
USP48-201ENST00000308271 ARGLU1Q9NWB6 273 aaPredicted RBP23.25■■□□□ 1.31
USP48-201ENST00000308271 CCDC141Q6ZP82 1450 aa23.25■■□□□ 1.31
USP48-201ENST00000308271 PDCP20941 246 aa23.24■■□□□ 1.31
USP48-201ENST00000308271 FIBPO43427 364 aa23.24■■□□□ 1.31
USP48-201ENST00000308271 DISP3Q9P2K9 1392 aa23.24■■□□□ 1.31
USP48-201ENST00000308271 NUTM2FA1L443 756 aa23.24■■□□□ 1.31
USP48-201ENST00000308271 UBTFL1P0CB47 393 aaPredicted RBP23.23■■□□□ 1.31
USP48-201ENST00000308271 CNTROBQ8N137 903 aa23.23■■□□□ 1.31
USP48-201ENST00000308271 DNAJC5BQ9UF47 199 aa23.23■■□□□ 1.31
USP48-201ENST00000308271 TPD52L1Q16890 204 aaPredicted RBP23.22■■□□□ 1.31
USP48-201ENST00000308271 CCDC27Q2M243 656 aa23.22■■□□□ 1.31
USP48-201ENST00000308271 RPAP2Q8IXW5 612 aaPredicted RBP23.22■■□□□ 1.31
USP48-201ENST00000308271 CCAR2Q8N163 923 aaKnown RBP23.22■■□□□ 1.31
USP48-201ENST00000308271 NECTIN2Q92692 538 aa23.22■■□□□ 1.31
USP48-201ENST00000308271 ABCC11Q96J66 1382 aa23.22■■□□□ 1.31
USP48-201ENST00000308271 TEFQ10587 303 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 ALDH1L2Q3SY69 923 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 CCDC192P0DO97 292 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 EIF2S2P20042 333 aaKnown RBP23.21■■□□□ 1.31
USP48-201ENST00000308271 SSFA2P28290 1259 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 CCDC66A2RUB6 948 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 PSMA5P28066 241 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 SYCE3A1L190 88 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 GNAI2P04899 355 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 CFAP43Q8NDM7 1665 aa23.21■■□□□ 1.31
USP48-201ENST00000308271 FCHSD2O94868 740 aa23.2■■□□□ 1.31
USP48-201ENST00000308271 BMP2KLQ5H9B9 411 aa23.19■■□□□ 1.3
USP48-201ENST00000308271 G3BP1Q13283 466 aaKnown RBP eCLIP23.19■■□□□ 1.3
USP48-201ENST00000308271 KLHL40Q2TBA0 621 aa23.19■■□□□ 1.3
USP48-201ENST00000308271 MCM5P33992 734 aa23.18■■□□□ 1.3
USP48-201ENST00000308271 MNS1Q8NEH6 495 aa23.18■■□□□ 1.3
USP48-201ENST00000308271 NAT10Q9H0A0 1025 aaKnown RBP23.18■■□□□ 1.3
USP48-201ENST00000308271 TRIM27P14373 513 aa23.18■■□□□ 1.3
USP48-201ENST00000308271 CPLX2Q6PUV4 134 aaKnown RBP23.17■■□□□ 1.3
USP48-201ENST00000308271 SURF6O75683 361 aaKnown RBP23.17■■□□□ 1.3
USP48-201ENST00000308271 TCOF1Q13428 1488 aaKnown RBP23.17■■□□□ 1.3
USP48-201ENST00000308271 CCT4P50991 539 aaKnown RBP23.16■■□□□ 1.3
USP48-201ENST00000308271 NEXNQ0ZGT2 675 aa23.16■■□□□ 1.3
USP48-201ENST00000308271 IFT140Q96RY7 1462 aa23.16■■□□□ 1.3
USP48-201ENST00000308271 AEBP1Q8IUX7 1158 aa23.16■■□□□ 1.3
USP48-201ENST00000308271 SPC24Q8NBT2 197 aa23.16■■□□□ 1.3
USP48-201ENST00000308271 PANK2Q9BZ23 570 aa23.16■■□□□ 1.3
USP48-201ENST00000308271 LRRCC1Q9C099 1032 aa23.16■■□□□ 1.3
USP48-201ENST00000308271 CLASRPQ8N2M8 674 aaKnown RBP23.16■■□□□ 1.3
USP48-201ENST00000308271 MPNDQ8N594 471 aa23.16■■□□□ 1.3
USP48-201ENST00000308271 PCDHB15Q9Y5E8 787 aa23.16■■□□□ 1.3
USP48-201ENST00000308271 TAF7LQ5H9L4 462 aa23.15■■□□□ 1.3
USP48-201ENST00000308271 TPM1P09493 284 aa23.15■■□□□ 1.3
USP48-201ENST00000308271 LRRFIP1Q32MZ4 808 aaKnown RBP23.15■■□□□ 1.3
USP48-201ENST00000308271 MAGI1Q96QZ7 1491 aaPredicted RBP23.15■■□□□ 1.3
USP48-201ENST00000308271 HDAC1Q13547 482 aaPredicted RBP23.15■■□□□ 1.3
USP48-201ENST00000308271 CCDC30Q5VVM6 783 aa23.15■■□□□ 1.3
USP48-201ENST00000308271 SRCIN1Q9C0H9 1055 aa23.15■■□□□ 1.3
USP48-201ENST00000308271 BAG4O95429 457 aaKnown RBP23.14■■□□□ 1.3
USP48-201ENST00000308271 XPCQ01831 940 aaPredicted RBP23.14■■□□□ 1.3
USP48-201ENST00000308271 EID1Q9Y6B2 187 aa23.14■■□□□ 1.29
USP48-201ENST00000308271 ARHGEF11O15085 1522 aa23.13■■□□□ 1.29
USP48-201ENST00000308271 SCAF11Q99590 1463 aaKnown RBP23.13■■□□□ 1.29
USP48-201ENST00000308271 SLC4A2P04920 1241 aa23.13■■□□□ 1.29
USP48-201ENST00000308271 CCDC112Q8NEF3 446 aa23.13■■□□□ 1.29
USP48-201ENST00000308271 CPLX1O14810 134 aa23.12■■□□□ 1.29
USP48-201ENST00000308271 ZMYND15Q9H091 742 aa23.12■■□□□ 1.29
USP48-201ENST00000308271 DDX58O95786 925 aaKnown RBP23.12■■□□□ 1.29
USP48-201ENST00000308271 NFE2L2Q16236 605 aa23.12■■□□□ 1.29
USP48-201ENST00000308271 SDF4Q9BRK5 362 aa23.12■■□□□ 1.29
USP48-201ENST00000308271 KRT85P78386 507 aa23.11■■□□□ 1.29
USP48-201ENST00000308271 RPGRIP1LQ68CZ1 1315 aa23.11■■□□□ 1.29
USP48-201ENST00000308271 A0A0U1RQG5 324 aaPredicted RBP23.11■■□□□ 1.29
USP48-201ENST00000308271 C1orf141Q5JVX7 400 aa23.11■■□□□ 1.29
USP48-201ENST00000308271 SNX21Q969T3 373 aa23.11■■□□□ 1.29
USP48-201ENST00000308271 KDM2BQ8NHM5 1336 aa23.1■■□□□ 1.29
USP48-201ENST00000308271 ATAD2Q6PL18 1390 aa23.1■■□□□ 1.29
USP48-201ENST00000308271 CSB-PGBD3P0DP91 1061 aa23.1■■□□□ 1.29
USP48-201ENST00000308271 PRAM1Q96QH2 718 aa23.1■■□□□ 1.29
USP48-201ENST00000308271 KINO60870 393 aaKnown RBP23.09■■□□□ 1.29
USP48-201ENST00000308271 TBC1D9Q6ZT07 1266 aa23.09■■□□□ 1.29
USP48-201ENST00000308271 CYP46A1Q9Y6A2 500 aa23.09■■□□□ 1.29
USP48-201ENST00000308271 HIP1O00291 1037 aa23.09■■□□□ 1.29
USP48-201ENST00000308271 TSR1Q2NL82 804 aaKnown RBP23.09■■□□□ 1.29
USP48-201ENST00000308271 CREBRFQ8IUR6 639 aa23.09■■□□□ 1.29
USP48-201ENST00000308271 PDCL2Q8N4E4 241 aa23.09■■□□□ 1.29
USP48-201ENST00000308271 HOOK1Q9UJC3 728 aaKnown RBP23.09■■□□□ 1.29
USP48-201ENST00000308271 MRC2Q9UBG0 1479 aa23.09■■□□□ 1.29
USP48-201ENST00000308271 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.09■■□□□ 1.29
USP48-201ENST00000308271 SNAPC4Q5SXM2 1469 aa23.08■■□□□ 1.29
USP48-201ENST00000308271 PDIA4P13667 645 aaKnown RBP23.08■■□□□ 1.29
USP48-201ENST00000308271 TNMDQ9H2S6 317 aa23.08■■□□□ 1.29
USP48-201ENST00000308271 PLEKHH1Q9ULM0 1364 aa23.08■■□□□ 1.29
USP48-201ENST00000308271 GAS2L2Q8NHY3 880 aa23.07■■□□□ 1.28
USP48-201ENST00000308271 DYNC1I1O14576 645 aa23.07■■□□□ 1.28
USP48-201ENST00000308271 PER1O15534 1290 aaPredicted RBP23.07■■□□□ 1.28
USP48-201ENST00000308271 SYNE3Q6ZMZ3 975 aa23.06■■□□□ 1.28
USP48-201ENST00000308271 TRIM29Q14134 588 aa23.06■■□□□ 1.28
USP48-201ENST00000308271 FBXW7Q969H0 707 aa23.06■■□□□ 1.28
USP48-201ENST00000308271 CABP1Q9NZU7 370 aa23.06■■□□□ 1.28
USP48-201ENST00000308271 ZNF330Q9Y3S2 320 aaPredicted RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms