RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 PIP4K2BP78356 416 aa13.08□□□□□ -0.32
RFX3-201ENST00000302303 EDC4Q6P2E9 1401 aaKnown RBP13.08□□□□□ -0.32
RFX3-201ENST00000302303 PSME1Q06323 249 aa13.07□□□□□ -0.32
RFX3-201ENST00000302303 ZRANB1Q9UGI0 708 aa13.07□□□□□ -0.32
RFX3-201ENST00000302303 NPHP3Q7Z494 1330 aa13.07□□□□□ -0.32
RFX3-201ENST00000302303 AHDC1Q5TGY3 1603 aaPredicted RBP13.06□□□□□ -0.32
RFX3-201ENST00000302303 BRD4O60885 1362 aaPredicted RBP13.06□□□□□ -0.32
RFX3-201ENST00000302303 NME9Q86XW9 330 aa13.05□□□□□ -0.32
RFX3-201ENST00000302303 SBNO1A3KN83 1393 aa13.05□□□□□ -0.32
RFX3-201ENST00000302303 NPC1L1Q9UHC9 1359 aa13.05□□□□□ -0.32
RFX3-201ENST00000302303 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.04□□□□□ -0.328e-7■■■□□ 18.5
RFX3-201ENST00000302303 SPATA31A3Q5VYP0 1347 aa13.04□□□□□ -0.32
RFX3-201ENST00000302303 KNSTRNQ9Y448 316 aa13.03□□□□□ -0.32
RFX3-201ENST00000302303 PIK3C2AO00443 1686 aa13.03□□□□□ -0.32
RFX3-201ENST00000302303 ALS2Q96Q42 1657 aa13.03□□□□□ -0.32
RFX3-201ENST00000302303 TTC21AQ8NDW8 1320 aa13.03□□□□□ -0.32
RFX3-201ENST00000302303 MARF1Q9Y4F3 1742 aaKnown RBP13.03□□□□□ -0.32
RFX3-201ENST00000302303 GGNBP2Q9H3C7 697 aa13.03□□□□□ -0.32
RFX3-201ENST00000302303 USP31Q70CQ4 1352 aa13.02□□□□□ -0.32
RFX3-201ENST00000302303 COL16A1Q07092 1604 aaPredicted RBP13.02□□□□□ -0.32
RFX3-201ENST00000302303 OVOS2A0A0J9YW53 1432 aa13.02□□□□□ -0.33
RFX3-201ENST00000302303 OVOS2Q6IE36 1432 aa13.02□□□□□ -0.33
RFX3-201ENST00000302303 CGNL1Q0VF96 1302 aa13.01□□□□□ -0.33
RFX3-201ENST00000302303 TNS3Q68CZ2 1445 aa13□□□□□ -0.33
RFX3-201ENST00000302303 PAK3O75914 559 aaPredicted RBP13□□□□□ -0.33
RFX3-201ENST00000302303 CC2D1BQ5T0F9 858 aaKnown RBP13□□□□□ -0.33
RFX3-201ENST00000302303 DIEXFQ68CQ4 756 aaKnown RBP13□□□□□ -0.33
RFX3-201ENST00000302303 ABTB2Q8N961 1025 aa13□□□□□ -0.33
RFX3-201ENST00000302303 USP54Q70EL1 1684 aa13□□□□□ -0.33
RFX3-201ENST00000302303 SCAF1Q9H7N4 1312 aaKnown RBP12.99□□□□□ -0.33
RFX3-201ENST00000302303 FBLN1P23142 703 aa12.99□□□□□ -0.33
RFX3-201ENST00000302303 NUTM2GQ5VZR2 741 aa12.99□□□□□ -0.33
RFX3-201ENST00000302303 MED1Q15648 1581 aaPredicted RBP12.99□□□□□ -0.33
RFX3-201ENST00000302303 PARD3Q8TEW0 1356 aa12.99□□□□□ -0.33
RFX3-201ENST00000302303 USP19O94966 1318 aa12.98□□□□□ -0.33
RFX3-201ENST00000302303 HSPA1LP34931 641 aa12.98□□□□□ -0.33
RFX3-201ENST00000302303 LRRC59Q96AG4 307 aaKnown RBP12.98□□□□□ -0.33
RFX3-201ENST00000302303 PRKRIP1Q9H875 184 aaPredicted RBP12.98□□□□□ -0.33
RFX3-201ENST00000302303 PHLPP1O60346 1717 aa12.98□□□□□ -0.33
RFX3-201ENST00000302303 KIF20BQ96Q89 1820 aa12.98□□□□□ -0.33
RFX3-201ENST00000302303 NSD2O96028 1365 aa12.98□□□□□ -0.33
RFX3-201ENST00000302303 NLRP6P59044 892 aa12.98□□□□□ -0.33
RFX3-201ENST00000302303 CRYBG1Q9Y4K1 1723 aa12.97□□□□□ -0.33
RFX3-201ENST00000302303 PNPLA6Q8IY17 1366 aa12.97□□□□□ -0.33
RFX3-201ENST00000302303 SLIT3O75094 1523 aa12.96□□□□□ -0.33
RFX3-201ENST00000302303 CNGB1Q14028 1251 aaPredicted RBP12.96□□□□□ -0.33
RFX3-201ENST00000302303 CABLES1Q8TDN4 633 aa12.96□□□□□ -0.33
RFX3-201ENST00000302303 FBXO41Q8TF61 875 aa12.96□□□□□ -0.33
RFX3-201ENST00000302303 ANKRD26Q9UPS8 1709 aa12.96□□□□□ -0.33
RFX3-201ENST00000302303 ARHGEF10O15013 1369 aa12.95□□□□□ -0.34
RFX3-201ENST00000302303 NLRP13Q86W25 1043 aa12.95□□□□□ -0.34
RFX3-201ENST00000302303 COL22A1Q8NFW1 1626 aaPredicted RBP12.94□□□□□ -0.34
RFX3-201ENST00000302303 GCP02774 474 aa12.94□□□□□ -0.34
RFX3-201ENST00000302303 LMOD2Q6P5Q4 547 aa12.94□□□□□ -0.34
RFX3-201ENST00000302303 COG3Q96JB2 828 aa12.94□□□□□ -0.34
RFX3-201ENST00000302303 NFAT5O94916 1531 aa12.94□□□□□ -0.34
RFX3-201ENST00000302303 MORC1Q86VD1 984 aa12.93□□□□□ -0.34
RFX3-201ENST00000302303 AATKQ6ZMQ8 1374 aa12.93□□□□□ -0.34
RFX3-201ENST00000302303 PPP2R1AP30153 589 aa12.93□□□□□ -0.34
RFX3-201ENST00000302303 RALBP1Q15311 655 aa12.93□□□□□ -0.34
RFX3-201ENST00000302303 POLKQ9UBT6 870 aa12.93□□□□□ -0.34
RFX3-201ENST00000302303 TNNT2P45379 298 aaPredicted RBP12.92□□□□□ -0.34
RFX3-201ENST00000302303 CCDC184Q52MB2 194 aa12.92□□□□□ -0.34
RFX3-201ENST00000302303 MIER1Q8N108 512 aa12.92□□□□□ -0.34
RFX3-201ENST00000302303 PHRF1Q9P1Y6 1649 aaKnown RBP12.92□□□□□ -0.34
RFX3-201ENST00000302303 ABCA3Q99758 1704 aa12.91□□□□□ -0.34
RFX3-201ENST00000302303 ARHGEF25Q86VW2 580 aa12.91□□□□□ -0.34
RFX3-201ENST00000302303 SHPRHQ149N8 1683 aa12.91□□□□□ -0.34
RFX3-201ENST00000302303 PLEKHG5O94827 1062 aa12.9□□□□□ -0.34
RFX3-201ENST00000302303 RRS1Q15050 365 aaKnown RBP12.9□□□□□ -0.34
RFX3-201ENST00000302303 EMILIN1Q9Y6C2 1016 aa12.9□□□□□ -0.34
RFX3-201ENST00000302303 JCADQ9P266 1359 aa12.9□□□□□ -0.34
RFX3-201ENST00000302303 MAP3K19Q56UN5 1328 aa12.9□□□□□ -0.34
RFX3-201ENST00000302303 SOX12O15370 315 aa12.89□□□□□ -0.35
RFX3-201ENST00000302303 ANP32CO43423 234 aa12.89□□□□□ -0.35
RFX3-201ENST00000302303 PEAK1Q9H792 1746 aa12.89□□□□□ -0.35
RFX3-201ENST00000302303 SMG6Q86US8 1419 aaKnown RBP12.89□□□□□ -0.35
RFX3-201ENST00000302303 MTHFSP49914 203 aa12.88□□□□□ -0.35
RFX3-201ENST00000302303 KCNH5Q8NCM2 988 aa12.88□□□□□ -0.35
RFX3-201ENST00000302303 MYBBP1AQ9BQG0 1328 aaKnown RBP12.88□□□□□ -0.35
RFX3-201ENST00000302303 CPDO75976 1380 aa12.88□□□□□ -0.35
RFX3-201ENST00000302303 ZC3H6P61129 1189 aaKnown RBP12.88□□□□□ -0.35
RFX3-201ENST00000302303 AXIN2Q9Y2T1 843 aa12.88□□□□□ -0.35
RFX3-201ENST00000302303 MAP2P11137 1827 aaKnown RBP12.87□□□□□ -0.35
RFX3-201ENST00000302303 COL18A1P39060 1754 aa12.87□□□□□ -0.35
RFX3-201ENST00000302303 INSRP06213 1382 aa12.87□□□□□ -0.35
RFX3-201ENST00000302303 FAM83GA6ND36 823 aa12.87□□□□□ -0.35
RFX3-201ENST00000302303 KCNA4P22459 653 aa12.87□□□□□ -0.35
RFX3-201ENST00000302303 LRP6O75581 1613 aa12.86□□□□□ -0.35
RFX3-201ENST00000302303 KIAA0232Q92628 1395 aa12.86□□□□□ -0.35
RFX3-201ENST00000302303 COL3A1P02461 1466 aaPredicted RBP12.86□□□□□ -0.35
RFX3-201ENST00000302303 SPATA31A6Q5VVP1 1343 aa12.85□□□□□ -0.35
RFX3-201ENST00000302303 HOXC9P31274 260 aa12.84□□□□□ -0.35
RFX3-201ENST00000302303 CHRNA2Q15822 529 aa12.84□□□□□ -0.35
RFX3-201ENST00000302303 HSP90AB2PQ58FF8 381 aa12.84□□□□□ -0.35
RFX3-201ENST00000302303 IP6K1Q92551 441 aa12.84□□□□□ -0.35
RFX3-201ENST00000302303 KIF24Q5T7B8 1368 aa12.84□□□□□ -0.35
RFX3-201ENST00000302303 LMO7Q8WWI1 1683 aa12.84□□□□□ -0.35
RFX3-201ENST00000302303 LTN1O94822 1766 aa12.83□□□□□ -0.35
RFX3-201ENST00000302303 CAMTA1Q9Y6Y1 1673 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms