RNA–Protein interactions for RNA: ENST00000298173.7

GTF2A1-201, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 2

Gene GTF2A1, Length 1,677 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-201ENST00000298173 GGNBP2Q9H3C7 697 aa33.34■■■□□ 2.93
GTF2A1-201ENST00000298173 MST1RQ04912 1400 aa33.33■■■□□ 2.93
GTF2A1-201ENST00000298173 TTC21BQ7Z4L5 1316 aa33.33■■■□□ 2.93
GTF2A1-201ENST00000298173 ESCO1Q5FWF5 840 aa33.33■■■□□ 2.93
GTF2A1-201ENST00000298173 ORAI2Q96SN7 254 aa33.31■■■□□ 2.92
GTF2A1-201ENST00000298173 NME9Q86XW9 330 aa33.28■■■□□ 2.92
GTF2A1-201ENST00000298173 LTBP4Q8N2S1 1624 aa33.27■■■□□ 2.92
GTF2A1-201ENST00000298173 AEBP2Q6ZN18 517 aaPredicted RBP33.26■■■□□ 2.92
GTF2A1-201ENST00000298173 TTC21AQ8NDW8 1320 aa33.25■■■□□ 2.91
GTF2A1-201ENST00000298173 PNISRQ8TF01 805 aaKnown RBP33.25■■■□□ 2.91
GTF2A1-201ENST00000298173 KIF1AQ12756 1690 aa33.24■■■□□ 2.91
GTF2A1-201ENST00000298173 ZRANB1Q9UGI0 708 aa33.22■■■□□ 2.91
GTF2A1-201ENST00000298173 TNNT2P45379 298 aaPredicted RBP33.2■■■□□ 2.91
GTF2A1-201ENST00000298173 SCAF1Q9H7N4 1312 aaKnown RBP33.2■■■□□ 2.91
GTF2A1-201ENST00000298173 FOXO3O43524 673 aa33.17■■■□□ 2.9
GTF2A1-201ENST00000298173 PSME1Q06323 249 aa33.17■■■□□ 2.9
GTF2A1-201ENST00000298173 COG3Q96JB2 828 aa33.17■■■□□ 2.9
GTF2A1-201ENST00000298173 OVOS2A0A0J9YW53 1432 aa33.17■■■□□ 2.9
GTF2A1-201ENST00000298173 OVOS2Q6IE36 1432 aa33.17■■■□□ 2.9
GTF2A1-201ENST00000298173 USP31Q70CQ4 1352 aa33.17■■■□□ 2.9
GTF2A1-201ENST00000298173 YTHDC1Q96MU7 727 aaKnown RBP33.17■■■□□ 2.9
GTF2A1-201ENST00000298173 FAM9BQ8IZU0 186 aa33.16■■■□□ 2.9
GTF2A1-201ENST00000298173 PIK3C2AO00443 1686 aa33.15■■■□□ 2.9
GTF2A1-201ENST00000298173 SLAIN2Q9P270 581 aa33.14■■■□□ 2.9
GTF2A1-201ENST00000298173 MTHFSP49914 203 aa33.13■■■□□ 2.89
GTF2A1-201ENST00000298173 AATKQ6ZMQ8 1374 aa33.12■■■□□ 2.89
GTF2A1-201ENST00000298173 USP54Q70EL1 1684 aa33.11■■■□□ 2.89
GTF2A1-201ENST00000298173 MAP2P11137 1827 aaKnown RBP33.11■■■□□ 2.89
GTF2A1-201ENST00000298173 TRPM3Q9HCF6 1732 aaPredicted RBP33.09■■■□□ 2.89
GTF2A1-201ENST00000298173 BRINP3Q76B58 766 aa33.08■■■□□ 2.89
GTF2A1-201ENST00000298173 KRT28Q7Z3Y7 464 aa33.08■■■□□ 2.89
GTF2A1-201ENST00000298173 MARF1Q9Y4F3 1742 aaKnown RBP33.08■■■□□ 2.89
GTF2A1-201ENST00000298173 PAK3O75914 559 aaPredicted RBP33.07■■■□□ 2.88
GTF2A1-201ENST00000298173 FBLN1P23142 703 aa33.07■■■□□ 2.88
GTF2A1-201ENST00000298173 ABTB2Q8N961 1025 aa33.07■■■□□ 2.88
GTF2A1-201ENST00000298173 POLKQ9UBT6 870 aa33.07■■■□□ 2.88
GTF2A1-201ENST00000298173 NLRP6P59044 892 aa33.04■■■□□ 2.88
GTF2A1-201ENST00000298173 XPCQ01831 940 aaPredicted RBP33.04■■■□□ 2.88
GTF2A1-201ENST00000298173 PNPLA6Q8IY17 1366 aa33.03■■■□□ 2.88
GTF2A1-201ENST00000298173 NPHP3Q7Z494 1330 aa33.03■■■□□ 2.88
GTF2A1-201ENST00000298173 INSRP06213 1382 aa33.02■■■□□ 2.88
GTF2A1-201ENST00000298173 SMG6Q86US8 1419 aaKnown RBP33.02■■■□□ 2.88
GTF2A1-201ENST00000298173 DDX17Q92841 729 aaKnown RBP33■■■□□ 2.87
GTF2A1-201ENST00000298173 CFAP53Q96M91 514 aa33■■■□□ 2.87
GTF2A1-201ENST00000298173 PXDNQ92626 1479 aa32.98■■■□□ 2.87
GTF2A1-201ENST00000298173 SBNO1A3KN83 1393 aa32.98■■■□□ 2.87
GTF2A1-201ENST00000298173 SHPRHQ149N8 1683 aa32.98■■■□□ 2.87
GTF2A1-201ENST00000298173 COL3A1P02461 1466 aaPredicted RBP32.98■■■□□ 2.87
GTF2A1-201ENST00000298173 NUTM2GQ5VZR2 741 aa32.97■■■□□ 2.87
GTF2A1-201ENST00000298173 ALS2Q96Q42 1657 aa32.97■■■□□ 2.87
GTF2A1-201ENST00000298173 ADAMTS8Q9UP79 889 aa32.97■■■□□ 2.87
GTF2A1-201ENST00000298173 EMILIN1Q9Y6C2 1016 aa32.97■■■□□ 2.87
GTF2A1-201ENST00000298173 RRS1Q15050 365 aaKnown RBP32.95■■■□□ 2.87
GTF2A1-201ENST00000298173 WDR43Q15061 677 aaKnown RBP eCLIP32.94■■■□□ 2.862e-10■□□□□ 9.2
GTF2A1-201ENST00000298173 CDK12Q9NYV4 1490 aaPredicted RBP32.92■■■□□ 2.86
GTF2A1-201ENST00000298173 SOS2Q07890 1332 aaPredicted RBP32.92■■■□□ 2.86
GTF2A1-201ENST00000298173 HNRNPUQ00839 825 aaKnown RBP eCLIP32.91■■■□□ 2.86
GTF2A1-201ENST00000298173 NHSL1Q5SYE7 1610 aa32.9■■■□□ 2.86
GTF2A1-201ENST00000298173 BLMP54132 1417 aaPredicted RBP32.9■■■□□ 2.86
GTF2A1-201ENST00000298173 SPATA31A3Q5VYP0 1347 aa32.89■■■□□ 2.86
GTF2A1-201ENST00000298173 PPM1GO15355 546 aaPredicted RBP32.88■■■□□ 2.85
GTF2A1-201ENST00000298173 USP19O94966 1318 aa32.87■■■□□ 2.85
GTF2A1-201ENST00000298173 SLIT3O75094 1523 aa32.87■■■□□ 2.85
GTF2A1-201ENST00000298173 TNS3Q68CZ2 1445 aa32.87■■■□□ 2.85
GTF2A1-201ENST00000298173 PEAK1Q9H792 1746 aa32.87■■■□□ 2.85
GTF2A1-201ENST00000298173 MAP3K19Q56UN5 1328 aa32.87■■■□□ 2.85
GTF2A1-201ENST00000298173 SOX12O15370 315 aa32.85■■■□□ 2.85
GTF2A1-201ENST00000298173 DIAPH1O60610 1272 aaKnown RBP32.85■■■□□ 2.85
GTF2A1-201ENST00000298173 KCNH5Q8NCM2 988 aa32.85■■■□□ 2.85
GTF2A1-201ENST00000298173 NFAT5O94916 1531 aa32.85■■■□□ 2.85
GTF2A1-201ENST00000298173 LMOD2Q6P5Q4 547 aa32.84■■■□□ 2.85
GTF2A1-201ENST00000298173 ROBO1Q9Y6N7 1651 aa32.83■■■□□ 2.85
GTF2A1-201ENST00000298173 KIF24Q5T7B8 1368 aa32.83■■■□□ 2.85
GTF2A1-201ENST00000298173 NUDCQ9Y266 331 aa32.82■■■□□ 2.84
GTF2A1-201ENST00000298173 GCP02774 474 aa32.82■■■□□ 2.84
GTF2A1-201ENST00000298173 IL13P35225 146 aa32.81■■■□□ 2.84
GTF2A1-201ENST00000298173 MED1Q15648 1581 aaPredicted RBP32.81■■■□□ 2.84
GTF2A1-201ENST00000298173 IQSEC2Q5JU85 1478 aa32.8■■■□□ 2.84
GTF2A1-201ENST00000298173 ARHGEF10O15013 1369 aa32.8■■■□□ 2.84
GTF2A1-201ENST00000298173 CENPBP07199 599 aaPredicted RBP32.79■■■□□ 2.84
GTF2A1-201ENST00000298173 FLT4P35916 1363 aa32.78■■■□□ 2.84
GTF2A1-201ENST00000298173 LTN1O94822 1766 aa32.77■■■□□ 2.84
GTF2A1-201ENST00000298173 ZBED9Q6R2W3 1325 aa32.77■■■□□ 2.84
GTF2A1-201ENST00000298173 TOM1O60784 492 aa32.77■■■□□ 2.84
GTF2A1-201ENST00000298173 HSP90AB2PQ58FF8 381 aa32.77■■■□□ 2.84
GTF2A1-201ENST00000298173 CRYBG1Q9Y4K1 1723 aa32.76■■■□□ 2.83
GTF2A1-201ENST00000298173 U2AF1L5P0DN76 240 aaPredicted RBP32.75■■■□□ 2.83
GTF2A1-201ENST00000298173 U2AF1Q01081 240 aaKnown RBP eCLIP32.75■■■□□ 2.83
GTF2A1-201ENST00000298173 AHDC1Q5TGY3 1603 aaPredicted RBP32.75■■■□□ 2.83
GTF2A1-201ENST00000298173 PHRF1Q9P1Y6 1649 aaKnown RBP32.75■■■□□ 2.83
GTF2A1-201ENST00000298173 AMPHP49418 695 aa32.75■■■□□ 2.83
GTF2A1-201ENST00000298173 U2SURPO15042 1029 aaKnown RBP32.73■■■□□ 2.83
GTF2A1-201ENST00000298173 ARHGEF25Q86VW2 580 aa32.73■■■□□ 2.83
GTF2A1-201ENST00000298173 HOXC9P31274 260 aa32.72■■■□□ 2.83
GTF2A1-201ENST00000298173 EIF4A2Q14240 407 aaKnown RBP32.72■■■□□ 2.83
GTF2A1-201ENST00000298173 RTL1A6NKG5 1358 aa32.72■■■□□ 2.83
GTF2A1-201ENST00000298173 CCDC146Q8IYE0 955 aa32.71■■■□□ 2.83
GTF2A1-201ENST00000298173 IP6K1Q92551 441 aa32.7■■■□□ 2.83
GTF2A1-201ENST00000298173 CERKQ8TCT0 537 aa32.69■■■□□ 2.82
GTF2A1-201ENST00000298173 RUNDC1Q96C34 613 aa32.69■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms