RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 VGFO15240 615 aaPredicted RBP18.31■□□□□ 0.52
CCNF-201ENST00000293968 ABCA6Q8N139 1617 aa18.31■□□□□ 0.52
CCNF-201ENST00000293968 GAS2L3Q86XJ1 694 aa18.31■□□□□ 0.52
CCNF-201ENST00000293968 ADGRL1O94910 1474 aa18.3■□□□□ 0.52
CCNF-201ENST00000293968 CD2BP2O95400 341 aaKnown RBP18.3■□□□□ 0.52
CCNF-201ENST00000293968 ZFYVE16Q7Z3T8 1539 aa18.29■□□□□ 0.52
CCNF-201ENST00000293968 MAP3K4Q9Y6R4 1608 aa18.29■□□□□ 0.52
CCNF-201ENST00000293968 K7ELQ4 463 aaPredicted RBP18.29■□□□□ 0.52
CCNF-201ENST00000293968 TBC1D9Q6ZT07 1266 aa18.29■□□□□ 0.52
CCNF-201ENST00000293968 HDGFL2Q7Z4V5 671 aaPredicted RBP18.29■□□□□ 0.52
CCNF-201ENST00000293968 ZMYM3Q14202 1370 aa18.28■□□□□ 0.52
CCNF-201ENST00000293968 ANKRD36BQ8N2N9 1353 aa18.28■□□□□ 0.52
CCNF-201ENST00000293968 IQSEC2Q5JU85 1478 aa18.28■□□□□ 0.52
CCNF-201ENST00000293968 SBNO2Q9Y2G9 1366 aa18.28■□□□□ 0.52
CCNF-201ENST00000293968 SKOR2Q2VWA4 1001 aaPredicted RBP18.28■□□□□ 0.52
CCNF-201ENST00000293968 STAG3Q9UJ98 1225 aa18.28■□□□□ 0.52
CCNF-201ENST00000293968 ATP7AQ04656 1500 aa18.28■□□□□ 0.52
CCNF-201ENST00000293968 MYOM2P54296 1465 aa18.27■□□□□ 0.52
CCNF-201ENST00000293968 RBM25P49756 843 aaKnown RBP18.27■□□□□ 0.52
CCNF-201ENST00000293968 FOXD4L5Q5VV16 416 aaPredicted RBP18.27■□□□□ 0.52
CCNF-201ENST00000293968 FOXD4L4Q8WXT5 416 aaPredicted RBP18.27■□□□□ 0.52
CCNF-201ENST00000293968 PLEKHF1Q96S99 279 aa18.27■□□□□ 0.52
CCNF-201ENST00000293968 CFAP65Q6ZU64 1925 aaKnown RBP18.27■□□□□ 0.51
CCNF-201ENST00000293968 MCTP1Q6DN14 999 aa18.27■□□□□ 0.51
CCNF-201ENST00000293968 PRAM1Q96QH2 718 aa18.27■□□□□ 0.51
CCNF-201ENST00000293968 ZNF692Q9BU19 519 aaPredicted RBP18.27■□□□□ 0.51
CCNF-201ENST00000293968 FYB1O15117 783 aa18.26■□□□□ 0.51
CCNF-201ENST00000293968 NASPP49321 788 aaPredicted RBP18.26■□□□□ 0.51
CCNF-201ENST00000293968 BMP2KLQ5H9B9 411 aa18.26■□□□□ 0.51
CCNF-201ENST00000293968 ERBB4Q15303 1308 aa18.25■□□□□ 0.51
CCNF-201ENST00000293968 A0A1W2PP64 1363 aa18.25■□□□□ 0.51
CCNF-201ENST00000293968 GAS2L2Q8NHY3 880 aa18.25■□□□□ 0.51
CCNF-201ENST00000293968 SNX21Q969T3 373 aa18.25■□□□□ 0.51
CCNF-201ENST00000293968 NPM1P06748 294 aaKnown RBP eCLIP18.25■□□□□ 0.51
CCNF-201ENST00000293968 RAB3GAP1Q15042 981 aa18.25■□□□□ 0.51
CCNF-201ENST00000293968 TSPYL6Q8N831 410 aa18.25■□□□□ 0.51
CCNF-201ENST00000293968 CIZ1Q9ULV3 898 aaPredicted RBP18.25■□□□□ 0.51
CCNF-201ENST00000293968 TET3O43151 1660 aa18.25■□□□□ 0.51
CCNF-201ENST00000293968 CABP1Q9NZU7 370 aa18.24■□□□□ 0.51
CCNF-201ENST00000293968 CD109Q6YHK3 1445 aa18.24■□□□□ 0.51
CCNF-201ENST00000293968 MSNP26038 577 aaKnown RBP18.24■□□□□ 0.51
CCNF-201ENST00000293968 CHMP4BQ9H444 224 aaKnown RBP18.23■□□□□ 0.51
CCNF-201ENST00000293968 GCC1Q96CN9 775 aa18.23■□□□□ 0.51
CCNF-201ENST00000293968 CDC45O75419 566 aa18.23■□□□□ 0.51
CCNF-201ENST00000293968 ABCC11Q96J66 1382 aa18.23■□□□□ 0.51
CCNF-201ENST00000293968 CAVIN1Q6NZI2 390 aaKnown RBP18.23■□□□□ 0.51
CCNF-201ENST00000293968 VIRMAQ69YN4 1812 aaKnown RBP18.22■□□□□ 0.51
CCNF-201ENST00000293968 TPRNQ4KMQ1 711 aa18.22■□□□□ 0.51
CCNF-201ENST00000293968 CALD1Q05682 793 aaKnown RBP18.22■□□□□ 0.51
CCNF-201ENST00000293968 ZCCHC11Q5TAX3 1644 aaKnown RBP18.22■□□□□ 0.51
CCNF-201ENST00000293968 ZBTB7CA1YPR0 619 aa18.22■□□□□ 0.51
CCNF-201ENST00000293968 NSD2O96028 1365 aa18.21■□□□□ 0.51
CCNF-201ENST00000293968 SHROOM2Q13796 1616 aa18.21■□□□□ 0.51
CCNF-201ENST00000293968 ALDH1L2Q3SY69 923 aa18.21■□□□□ 0.51
CCNF-201ENST00000293968 PTMSP20962 102 aa18.21■□□□□ 0.51
CCNF-201ENST00000293968 CHD1O14646 1710 aa18.2■□□□□ 0.5
CCNF-201ENST00000293968 PHACTR3Q96KR7 559 aa18.2■□□□□ 0.5
CCNF-201ENST00000293968 ISY1Q9ULR0 285 aaKnown RBP18.2■□□□□ 0.5
CCNF-201ENST00000293968 ZBTB7BO15156 539 aaPredicted RBP18.2■□□□□ 0.5
CCNF-201ENST00000293968 IL16Q14005 1332 aa18.2■□□□□ 0.5
CCNF-201ENST00000293968 TWISTNBQ3B726 338 aaPredicted RBP18.2■□□□□ 0.5
CCNF-201ENST00000293968 RPGRIP1LQ68CZ1 1315 aa18.19■□□□□ 0.5
CCNF-201ENST00000293968 ATAD2Q6PL18 1390 aa18.19■□□□□ 0.5
CCNF-201ENST00000293968 SHPRHQ149N8 1683 aa18.19■□□□□ 0.5
CCNF-201ENST00000293968 DCTN1Q14203 1278 aa18.19■□□□□ 0.5
CCNF-201ENST00000293968 ARID3AQ99856 593 aa18.19■□□□□ 0.5
CCNF-201ENST00000293968 FCHSD2O94868 740 aa18.18■□□□□ 0.5
CCNF-201ENST00000293968 C16orf71Q8IYS4 520 aaPredicted RBP18.18■□□□□ 0.5
CCNF-201ENST00000293968 CDK19Q9BWU1 502 aa18.18■□□□□ 0.5
CCNF-201ENST00000293968 BAG4O95429 457 aaKnown RBP18.18■□□□□ 0.5
CCNF-201ENST00000293968 NOL8Q76FK4 1167 aaKnown RBP18.18■□□□□ 0.5
CCNF-201ENST00000293968 IDI1Q13907 227 aa18.17■□□□□ 0.5
CCNF-201ENST00000293968 KIF2CQ99661 725 aa18.17■□□□□ 0.5
CCNF-201ENST00000293968 NPATQ14207 1427 aa18.17■□□□□ 0.5
CCNF-201ENST00000293968 VAMP4O75379 141 aa18.17■□□□□ 0.5
CCNF-201ENST00000293968 GNAI1P63096 354 aa18.17■□□□□ 0.5
CCNF-201ENST00000293968 KIAA1211Q6ZU35 1233 aa18.17■□□□□ 0.5
CCNF-201ENST00000293968 MRPL50Q8N5N7 158 aaKnown RBP18.17■□□□□ 0.5
CCNF-201ENST00000293968 CASC1Q6TDU7 716 aa18.16■□□□□ 0.5
CCNF-201ENST00000293968 KIF1BO60333 1816 aa18.16■□□□□ 0.5
CCNF-201ENST00000293968 FAM83GA6ND36 823 aa18.16■□□□□ 0.5
CCNF-201ENST00000293968 RAPGEF3O95398 923 aa18.16■□□□□ 0.5
CCNF-201ENST00000293968 PRPF40AO75400 957 aaKnown RBP18.16■□□□□ 0.5
CCNF-201ENST00000293968 CCDC173Q0VFZ6 552 aa18.16■□□□□ 0.5
CCNF-201ENST00000293968 EMILIN1Q9Y6C2 1016 aa18.16■□□□□ 0.5
CCNF-201ENST00000293968 FOXD4L6Q3SYB3 417 aaPredicted RBP18.16■□□□□ 0.5
CCNF-201ENST00000293968 FOXD4L3Q6VB84 417 aaPredicted RBP18.16■□□□□ 0.5
CCNF-201ENST00000293968 MBIPQ9NS73 344 aa18.16■□□□□ 0.5
CCNF-201ENST00000293968 PPIP5K1Q6PFW1 1433 aa18.15■□□□□ 0.5
CCNF-201ENST00000293968 SMARCA5O60264 1052 aaPredicted RBP18.15■□□□□ 0.5
CCNF-201ENST00000293968 NFE2L2Q16236 605 aa18.15■□□□□ 0.5
CCNF-201ENST00000293968 RRP9O43818 475 aaKnown RBP18.15■□□□□ 0.5
CCNF-201ENST00000293968 DDIT3P35638 169 aa18.15■□□□□ 0.5
CCNF-201ENST00000293968 KIAA1210Q9ULL0 1709 aa18.14■□□□□ 0.49
CCNF-201ENST00000293968 SOX12O15370 315 aa18.14■□□□□ 0.49
CCNF-201ENST00000293968 SIRT2Q8IXJ6 389 aa18.14■□□□□ 0.49
CCNF-201ENST00000293968 C8orf58Q8NAV2 365 aa18.14■□□□□ 0.49
CCNF-201ENST00000293968 RBM10P98175 930 aaKnown RBP18.13■□□□□ 0.49
CCNF-201ENST00000293968 RABEP1Q15276 862 aa18.13■□□□□ 0.49
CCNF-201ENST00000293968 API5Q9BZZ5 524 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms