RNA–Protein interactions for RNA: ENST00000279247.10

CAPN1-201, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,007 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-201ENST00000279247 RRS1Q15050 365 aaKnown RBP23.41■■□□□ 1.34
CAPN1-201ENST00000279247 SKAP1Q86WV1 359 aa23.41■■□□□ 1.34
CAPN1-201ENST00000279247 CEP170BQ9Y4F5 1589 aaPredicted RBP23.41■■□□□ 1.34
CAPN1-201ENST00000279247 HSPA2P54652 639 aa23.41■■□□□ 1.34
CAPN1-201ENST00000279247 ANKLE2Q86XL3 938 aa23.4■■□□□ 1.34
CAPN1-201ENST00000279247 PMFBP1Q8TBY8 1022 aa23.4■■□□□ 1.34
CAPN1-201ENST00000279247 MAPK8IP3Q9UPT6 1336 aa23.4■■□□□ 1.34
CAPN1-201ENST00000279247 HMOX1P09601 288 aa23.4■■□□□ 1.34
CAPN1-201ENST00000279247 KCNA6P17658 529 aa23.39■■□□□ 1.33
CAPN1-201ENST00000279247 CANXP27824 592 aaKnown RBP23.39■■□□□ 1.33
CAPN1-201ENST00000279247 FRAT1Q92837 279 aaPredicted RBP23.39■■□□□ 1.33
CAPN1-201ENST00000279247 POLKQ9UBT6 870 aa23.39■■□□□ 1.33
CAPN1-201ENST00000279247 TRMT2AQ8IZ69 625 aaKnown RBP23.38■■□□□ 1.33
CAPN1-201ENST00000279247 NKTRP30414 1462 aaKnown RBP23.37■■□□□ 1.33
CAPN1-201ENST00000279247 ARHGAP23Q9P227 1491 aa23.36■■□□□ 1.33
CAPN1-201ENST00000279247 COG3Q96JB2 828 aa23.36■■□□□ 1.33
CAPN1-201ENST00000279247 TSR2Q969E8 191 aaKnown RBP23.35■■□□□ 1.33
CAPN1-201ENST00000279247 SLIT1O75093 1534 aa23.35■■□□□ 1.33
CAPN1-201ENST00000279247 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.35■■□□□ 1.33
CAPN1-201ENST00000279247 TBX22Q9Y458 520 aa23.35■■□□□ 1.33
CAPN1-201ENST00000279247 FAM135BQ49AJ0 1406 aa23.33■■□□□ 1.33
CAPN1-201ENST00000279247 ACEP12821 1306 aa23.33■■□□□ 1.33
CAPN1-201ENST00000279247 ATP7BP35670 1465 aa23.32■■□□□ 1.32
CAPN1-201ENST00000279247 KDM4FA0A1W2PPD8 638 aa23.32■■□□□ 1.32
CAPN1-201ENST00000279247 TMPOP42166 694 aaKnown RBP23.32■■□□□ 1.32
CAPN1-201ENST00000279247 PRKAR2BP31323 418 aa23.31■■□□□ 1.32
CAPN1-201ENST00000279247 RIPK4P57078 832 aa23.31■■□□□ 1.32
CAPN1-201ENST00000279247 NGEFQ8N5V2 710 aa23.31■■□□□ 1.32
CAPN1-201ENST00000279247 PLEKHF1Q96S99 279 aa23.3■■□□□ 1.32
CAPN1-201ENST00000279247 LAS1LQ9Y4W2 734 aaKnown RBP23.3■■□□□ 1.32
CAPN1-201ENST00000279247 TECPR2O15040 1411 aa23.3■■□□□ 1.32
CAPN1-201ENST00000279247 EDC4Q6P2E9 1401 aaKnown RBP23.29■■□□□ 1.32
CAPN1-201ENST00000279247 CPS1P31327 1500 aa23.29■■□□□ 1.32
CAPN1-201ENST00000279247 SIRT1Q96EB6 747 aa23.29■■□□□ 1.32
CAPN1-201ENST00000279247 CPSF1Q10570 1443 aaKnown RBP23.29■■□□□ 1.32
CAPN1-201ENST00000279247 MED14O60244 1454 aa23.29■■□□□ 1.32
CAPN1-201ENST00000279247 PANK1Q8TE04 598 aa23.29■■□□□ 1.32
CAPN1-201ENST00000279247 KIF20BQ96Q89 1820 aa23.29■■□□□ 1.32
CAPN1-201ENST00000279247 IQSEC2Q5JU85 1478 aa23.28■■□□□ 1.32
CAPN1-201ENST00000279247 CLUAP1Q96AJ1 413 aa23.28■■□□□ 1.32
CAPN1-201ENST00000279247 SETD1BQ9UPS6 1966 aaKnown RBP23.28■■□□□ 1.32
CAPN1-201ENST00000279247 NGDNQ8NEJ9 315 aaKnown RBP23.27■■□□□ 1.32
CAPN1-201ENST00000279247 NEFMP07197 916 aa23.27■■□□□ 1.32
CAPN1-201ENST00000279247 WDR63Q8IWG1 891 aa23.27■■□□□ 1.32
CAPN1-201ENST00000279247 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.27■■□□□ 1.31
CAPN1-201ENST00000279247 MAP2P11137 1827 aaKnown RBP23.26■■□□□ 1.31
CAPN1-201ENST00000279247 TNNQ9UQP3 1299 aa23.26■■□□□ 1.31
CAPN1-201ENST00000279247 COG6Q9Y2V7 657 aa23.26■■□□□ 1.31
CAPN1-201ENST00000279247 PLEKHG5O94827 1062 aa23.26■■□□□ 1.31
CAPN1-201ENST00000279247 NUTM2GQ5VZR2 741 aa23.26■■□□□ 1.31
CAPN1-201ENST00000279247 THUMPD2Q9BTF0 503 aaKnown RBP23.26■■□□□ 1.31
CAPN1-201ENST00000279247 COL3A1P02461 1466 aaPredicted RBP23.26■■□□□ 1.31
CAPN1-201ENST00000279247 PHACTR3Q96KR7 559 aa23.25■■□□□ 1.31
CAPN1-201ENST00000279247 ZNF692Q9BU19 519 aaPredicted RBP23.25■■□□□ 1.31
CAPN1-201ENST00000279247 TRIM35Q9UPQ4 493 aa23.25■■□□□ 1.31
CAPN1-201ENST00000279247 PHF23Q9BUL5 403 aaPredicted RBP23.24■■□□□ 1.31
CAPN1-201ENST00000279247 TTC21BQ7Z4L5 1316 aa23.24■■□□□ 1.31
CAPN1-201ENST00000279247 ANKRD26Q9UPS8 1709 aa23.24■■□□□ 1.31
CAPN1-201ENST00000279247 MYH16Q9H6N6 1097 aa23.24■■□□□ 1.31
CAPN1-201ENST00000279247 RARSP54136 660 aaKnown RBP23.22■■□□□ 1.31
CAPN1-201ENST00000279247 EXOSC9Q06265 439 aaKnown RBP23.22■■□□□ 1.31
CAPN1-201ENST00000279247 KNDC1Q76NI1 1749 aa23.22■■□□□ 1.31
CAPN1-201ENST00000279247 C14orf37Q86TY3 774 aa23.22■■□□□ 1.31
CAPN1-201ENST00000279247 CDC42BPGQ6DT37 1551 aa23.21■■□□□ 1.31
CAPN1-201ENST00000279247 CCDC27Q2M243 656 aa23.21■■□□□ 1.31
CAPN1-201ENST00000279247 PNPLA6Q8IY17 1366 aa23.2■■□□□ 1.31
CAPN1-201ENST00000279247 FANCIQ9NVI1 1328 aa23.2■■□□□ 1.31
CAPN1-201ENST00000279247 RSPH6AQ9H0K4 717 aa23.2■■□□□ 1.3
CAPN1-201ENST00000279247 FCHSD2O94868 740 aa23.19■■□□□ 1.3
CAPN1-201ENST00000279247 PAK3O75914 559 aaPredicted RBP23.19■■□□□ 1.3
CAPN1-201ENST00000279247 IL13P35225 146 aa23.18■■□□□ 1.3
CAPN1-201ENST00000279247 PNNQ9H307 717 aaKnown RBP23.17■■□□□ 1.3
CAPN1-201ENST00000279247 HSP90AB2PQ58FF8 381 aa23.17■■□□□ 1.3
CAPN1-201ENST00000279247 AEBP1Q8IUX7 1158 aa23.17■■□□□ 1.3
CAPN1-201ENST00000279247 NPHP4O75161 1426 aaPredicted RBP23.16■■□□□ 1.3
CAPN1-201ENST00000279247 PLEKHG3A1L390 1219 aa23.16■■□□□ 1.3
CAPN1-201ENST00000279247 RLBP1P12271 317 aa23.16■■□□□ 1.3
CAPN1-201ENST00000279247 ELL2O00472 640 aaPredicted RBP23.15■■□□□ 1.3
CAPN1-201ENST00000279247 ITSN1Q15811 1721 aa23.15■■□□□ 1.3
CAPN1-201ENST00000279247 SMC4Q9NTJ3 1288 aa23.15■■□□□ 1.3
CAPN1-201ENST00000279247 LRRC7Q96NW7 1537 aa23.15■■□□□ 1.3
CAPN1-201ENST00000279247 NPM2Q86SE8 214 aaKnown RBP23.14■■□□□ 1.3
CAPN1-201ENST00000279247 DCTN1Q14203 1278 aa23.14■■□□□ 1.29
CAPN1-201ENST00000279247 FAM83GA6ND36 823 aa23.14■■□□□ 1.29
CAPN1-201ENST00000279247 RGS3P49796 1198 aa23.14■■□□□ 1.29
CAPN1-201ENST00000279247 SULT6B1Q6IMI4 303 aa23.14■■□□□ 1.29
CAPN1-201ENST00000279247 USP6P35125 1406 aa23.13■■□□□ 1.29
CAPN1-201ENST00000279247 TCERG1O14776 1098 aaKnown RBP23.12■■□□□ 1.29
CAPN1-201ENST00000279247 ZNF142P52746 1687 aaPredicted RBP23.12■■□□□ 1.29
CAPN1-201ENST00000279247 NLRP6P59044 892 aa23.11■■□□□ 1.29
CAPN1-201ENST00000279247 RGPD8O14715 1765 aaPredicted RBP23.11■■□□□ 1.29
CAPN1-201ENST00000279247 EIF4A2Q14240 407 aaKnown RBP23.11■■□□□ 1.29
CAPN1-201ENST00000279247 ADGRB2O60241 1585 aa23.11■■□□□ 1.29
CAPN1-201ENST00000279247 MON2Q7Z3U7 1717 aa23.11■■□□□ 1.29
CAPN1-201ENST00000279247 NFE2L2Q16236 605 aa23.1■■□□□ 1.29
CAPN1-201ENST00000279247 MSH5O43196 834 aa23.1■■□□□ 1.29
CAPN1-201ENST00000279247 ZBTB7CA1YPR0 619 aa23.09■■□□□ 1.29
CAPN1-201ENST00000279247 PROSER2Q86WR7 435 aaPredicted RBP23.09■■□□□ 1.29
CAPN1-201ENST00000279247 FTSJ3Q8IY81 847 aaKnown RBP23.09■■□□□ 1.29
CAPN1-201ENST00000279247 SSH1Q8WYL5 1049 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms