RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 CDK11BP21127 795 aaKnown RBP10.95□□□□□ -0.66
VAPB-201ENST00000265619 RAB3GAP1Q15042 981 aa10.95□□□□□ -0.66
VAPB-201ENST00000265619 TNNT2P45379 298 aaPredicted RBP10.95□□□□□ -0.66
VAPB-201ENST00000265619 SASS6Q6UVJ0 657 aa10.94□□□□□ -0.66
VAPB-201ENST00000265619 HSCBQ8IWL3 235 aa10.94□□□□□ -0.66
VAPB-201ENST00000265619 CHAMP1Q96JM3 812 aa10.94□□□□□ -0.66
VAPB-201ENST00000265619 CGNQ9P2M7 1197 aaKnown RBP10.94□□□□□ -0.66
VAPB-201ENST00000265619 DISP3Q9P2K9 1392 aa10.94□□□□□ -0.66
VAPB-201ENST00000265619 ZKSCAN5Q9Y2L8 839 aa10.93□□□□□ -0.66
VAPB-201ENST00000265619 CEBPAP49715 358 aaPredicted RBP10.93□□□□□ -0.66
VAPB-201ENST00000265619 PDLIM2Q96JY6 352 aa10.93□□□□□ -0.66
VAPB-201ENST00000265619 MAST1Q9Y2H9 1570 aa10.93□□□□□ -0.66
VAPB-201ENST00000265619 APAF1O14727 1248 aa10.93□□□□□ -0.66
VAPB-201ENST00000265619 C17orf53Q8N3J3 647 aaPredicted RBP10.93□□□□□ -0.66
VAPB-201ENST00000265619 RBM42Q9BTD8 480 aaKnown RBP10.93□□□□□ -0.66
VAPB-201ENST00000265619 RBM27Q9P2N5 1060 aaKnown RBP10.93□□□□□ -0.66
VAPB-201ENST00000265619 PRIM1P49642 420 aaKnown RBP10.92□□□□□ -0.66
VAPB-201ENST00000265619 BCL2L13Q9BXK5 485 aa10.92□□□□□ -0.66
VAPB-201ENST00000265619 DDX49Q9Y6V7 483 aaKnown RBP10.92□□□□□ -0.66
VAPB-201ENST00000265619 PLXNC1O60486 1568 aa10.92□□□□□ -0.66
VAPB-201ENST00000265619 IDI1Q13907 227 aa10.92□□□□□ -0.66
VAPB-201ENST00000265619 CAVIN1Q6NZI2 390 aaKnown RBP10.92□□□□□ -0.66
VAPB-201ENST00000265619 NKTRP30414 1462 aaKnown RBP10.92□□□□□ -0.66
VAPB-201ENST00000265619 MTERF4Q7Z6M4 381 aaKnown RBP10.91□□□□□ -0.66
VAPB-201ENST00000265619 UHRF1BP1Q6BDS2 1440 aa10.91□□□□□ -0.66
VAPB-201ENST00000265619 KIF20AO95235 890 aa10.91□□□□□ -0.66
VAPB-201ENST00000265619 TMF1P82094 1093 aa10.91□□□□□ -0.66
VAPB-201ENST00000265619 CGNL1Q0VF96 1302 aa10.91□□□□□ -0.66
VAPB-201ENST00000265619 NCLP19338 710 aaKnown RBP10.91□□□□□ -0.66
VAPB-201ENST00000265619 SMC5Q8IY18 1101 aa10.91□□□□□ -0.66
VAPB-201ENST00000265619 GTPBP4Q9BZE4 634 aaKnown RBP10.91□□□□□ -0.66
VAPB-201ENST00000265619 ZSCAN23Q3MJ62 389 aa10.9□□□□□ -0.66
VAPB-201ENST00000265619 GBP4Q96PP9 640 aa10.9□□□□□ -0.66
VAPB-201ENST00000265619 ATP10AO60312 1499 aa10.9□□□□□ -0.66
VAPB-201ENST00000265619 KIDINS220Q9ULH0 1771 aa10.9□□□□□ -0.66
VAPB-201ENST00000265619 PRAG1Q86YV5 1406 aa10.9□□□□□ -0.66
VAPB-201ENST00000265619 E9PSI1 815 aa10.9□□□□□ -0.67
VAPB-201ENST00000265619 PPP2R1AP30153 589 aa10.9□□□□□ -0.67
VAPB-201ENST00000265619 WDR43Q15061 677 aaKnown RBP eCLIP10.9□□□□□ -0.67
VAPB-201ENST00000265619 CERS3Q8IU89 383 aa10.9□□□□□ -0.67
VAPB-201ENST00000265619 KIF2CQ99661 725 aa10.9□□□□□ -0.67
VAPB-201ENST00000265619 LETM1O95202 739 aaPredicted RBP10.89□□□□□ -0.67
VAPB-201ENST00000265619 GAS2L2Q8NHY3 880 aa10.89□□□□□ -0.67
VAPB-201ENST00000265619 INSRP06213 1382 aa10.89□□□□□ -0.67
VAPB-201ENST00000265619 ARAP3Q8WWN8 1544 aa10.89□□□□□ -0.67
VAPB-201ENST00000265619 PKP1Q13835 747 aa10.89□□□□□ -0.67
VAPB-201ENST00000265619 SKOR2Q2VWA4 1001 aaPredicted RBP10.89□□□□□ -0.67
VAPB-201ENST00000265619 MYRIPQ8NFW9 859 aa10.89□□□□□ -0.67
VAPB-201ENST00000265619 HSP90AB1P08238 724 aaKnown RBP10.88□□□□□ -0.67
VAPB-201ENST00000265619 NOS1P29475 1434 aa10.88□□□□□ -0.67
VAPB-201ENST00000265619 NUTM2FA1L443 756 aa10.88□□□□□ -0.67
VAPB-201ENST00000265619 BAG4O95429 457 aaKnown RBP10.88□□□□□ -0.67
VAPB-201ENST00000265619 U2AF2P26368 475 aaKnown RBP eCLIP10.88□□□□□ -0.672e-6■□□□□ 9.4
VAPB-201ENST00000265619 KLHL40Q2TBA0 621 aa10.88□□□□□ -0.67
VAPB-201ENST00000265619 NSFL1CQ9UNZ2 370 aaKnown RBP10.88□□□□□ -0.67
VAPB-201ENST00000265619 UNC13BO14795 1591 aa10.88□□□□□ -0.67
VAPB-201ENST00000265619 PDE3AQ14432 1141 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 HS1BP3Q53T59 392 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 CEP152O94986 1710 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 IRX5P78411 483 aaPredicted RBP10.87□□□□□ -0.67
VAPB-201ENST00000265619 MCTP1Q6DN14 999 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 RNF214Q8ND24 703 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 NPATQ14207 1427 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 KDM5DQ9BY66 1539 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 IQGAP3Q86VI3 1631 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 INO80Q9ULG1 1556 aaPredicted RBP10.87□□□□□ -0.67
VAPB-201ENST00000265619 ZNF445P59923 1031 aa10.87□□□□□ -0.67
VAPB-201ENST00000265619 HECW2Q9P2P5 1572 aa10.86□□□□□ -0.67
VAPB-201ENST00000265619 FBXO3Q9UK99 471 aa10.86□□□□□ -0.67
VAPB-201ENST00000265619 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.86□□□□□ -0.67
VAPB-201ENST00000265619 TESK2Q96S53 571 aa10.86□□□□□ -0.67
VAPB-201ENST00000265619 MINK1Q8N4C8 1332 aaPredicted RBP10.86□□□□□ -0.67
VAPB-201ENST00000265619 SAMD1Q6SPF0 538 aaPredicted RBP10.86□□□□□ -0.67
VAPB-201ENST00000265619 ZBTB9Q96C00 473 aa10.86□□□□□ -0.67
VAPB-201ENST00000265619 ABCA6Q8N139 1617 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 MAP3K4Q9Y6R4 1608 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 GPT2Q8TD30 523 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 BCL2L12Q9HB09 334 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 PRDM15P57071 1507 aaPredicted RBP10.85□□□□□ -0.67
VAPB-201ENST00000265619 CSPP1Q1MSJ5 1256 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 KNSTRNQ9Y448 316 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 NEO1Q92859 1461 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 PMFBP1Q8TBY8 1022 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 LMBRD1Q9NUN5 540 aa10.85□□□□□ -0.67
VAPB-201ENST00000265619 SRPK2P78362 688 aaKnown RBP10.84□□□□□ -0.67
VAPB-201ENST00000265619 DNTTIP2Q5QJE6 756 aaKnown RBP10.84□□□□□ -0.67
VAPB-201ENST00000265619 SNX21Q969T3 373 aa10.84□□□□□ -0.67
VAPB-201ENST00000265619 GLI2P10070 1586 aa10.84□□□□□ -0.67
VAPB-201ENST00000265619 CLTCL1P53675 1640 aa10.84□□□□□ -0.67
VAPB-201ENST00000265619 IBTKQ9P2D0 1353 aaPredicted RBP10.84□□□□□ -0.67
VAPB-201ENST00000265619 MAGI2Q86UL8 1455 aa10.84□□□□□ -0.67
VAPB-201ENST00000265619 KIF13AQ9H1H9 1805 aa10.84□□□□□ -0.67
VAPB-201ENST00000265619 PPRC1Q5VV67 1664 aaKnown RBP10.83□□□□□ -0.67
VAPB-201ENST00000265619 COL17A1Q9UMD9 1497 aaPredicted RBP10.83□□□□□ -0.68
VAPB-201ENST00000265619 TMEM63CQ9P1W3 806 aa10.83□□□□□ -0.68
VAPB-201ENST00000265619 CIZ1Q9ULV3 898 aaPredicted RBP10.83□□□□□ -0.68
VAPB-201ENST00000265619 SYCE3A1L190 88 aa10.83□□□□□ -0.68
VAPB-201ENST00000265619 RBM25P49756 843 aaKnown RBP10.83□□□□□ -0.68
VAPB-201ENST00000265619 NEUROD2Q15784 382 aa10.83□□□□□ -0.68
VAPB-201ENST00000265619 RARSP54136 660 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms