RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 MPP6Q9NZW5 540 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 ASIC3Q9UHC3 531 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 IGLV3-10A0A075B6K4 115 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 BCLAF3A2AJT9 711 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 FGF10O15520 208 aaPredicted RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 IFNB1P01574 187 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 PTPN2P17706 415 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 RBL1P28749 1068 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 CORO1AP31146 461 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 HARS2P49590 506 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 FAM133BQ5BKY9 247 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 FBXL22Q6P050 247 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 DENND1CQ8IV53 801 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 CCDC89Q8N998 374 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 SHKBP1Q8TBC3 707 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 ADAMTS19Q8TE59 1207 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 HNRNPLLQ8WVV9 542 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 IGSF8Q969P0 613 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 TCEAL4Q96EI5 215 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 QKIQ96PU8 341 aaKnown RBP eCLIP19.16■□□□□ 0.66
CLN3-206ENST00000360019 GCNAQ96QF7 691 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 PCDH9Q9HC56 1237 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 NDFIP2Q9NV92 336 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 DPP7Q9UHL4 492 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 C5orf42Q9H799 3197 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 ACSL4O60488 711 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 MOSPD3O75425 235 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 RHOP08100 348 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 MTA1Q13330 715 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 SLC45A4Q5BKX6 768 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 FAM182AQ5T1J6 154 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 ZDHHC24Q6UX98 284 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 BZW1Q7L1Q6 419 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 NLRP14Q86W24 1093 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 EIF1ADQ8N9N8 165 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 VN1R2Q8NFZ6 395 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 AENQ8WTP8 325 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 PRKD2Q9BZL6 878 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 PRO3102Q9H379 93 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 CATSPERBQ9H7T0 1116 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 PPARGC1AQ9UBK2 798 aaKnown RBP19.16■□□□□ 0.66
CLN3-206ENST00000360019 CPQQ9Y646 472 aa19.16■□□□□ 0.66
CLN3-206ENST00000360019 NOTCH4Q99466 2003 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 TP73O15350 636 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 XYLBO75191 536 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 ERLIN1O75477 346 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 SEC31AO94979 1220 aaKnown RBP19.15■□□□□ 0.66
CLN3-206ENST00000360019 TACR2P21452 398 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 SLC6A4P31645 630 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 STIP1P31948 543 aaKnown RBP19.15■□□□□ 0.66
CLN3-206ENST00000360019 SERPINB6P35237 376 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 SMAD3P84022 425 aaKnown RBP19.15■□□□□ 0.66
CLN3-206ENST00000360019 KCNC3Q14003 757 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 HLTFQ14527 1009 aaKnown RBP eCLIP19.15■□□□□ 0.66
CLN3-206ENST00000360019 SLC5A9Q2M3M2 681 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 BEND6Q5SZJ8 279 aaPredicted RBP19.15■□□□□ 0.66
CLN3-206ENST00000360019 ACBD5Q5T8D3 534 aaPredicted RBP19.15■□□□□ 0.66
CLN3-206ENST00000360019 PDZD4Q76G19 769 aaPredicted RBP19.15■□□□□ 0.66
CLN3-206ENST00000360019 CHSY1Q86X52 802 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 CDKL3Q8IVW4 592 aaPredicted RBP19.15■□□□□ 0.66
CLN3-206ENST00000360019 RTL3Q8N8U3 475 aaKnown RBP19.15■□□□□ 0.66
CLN3-206ENST00000360019 LGMNQ99538 433 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 SLC46A2Q9BY10 475 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 PRDM12Q9H4Q4 367 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 ZDHHC18Q9NUE0 388 aa19.15■□□□□ 0.66
CLN3-206ENST00000360019 CCDC195A0A1B0GUA6 201 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 DRGXA6NNA5 263 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 WASH4PA8MWX3 477 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 KCNN4O15554 427 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 GREM1O60565 184 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 CNTN5O94779 1100 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 CKMP06732 381 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 POU2F2P09086 479 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 VAV1P15498 845 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 SLC11A2P49281 568 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 NTHL1P78549 312 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 SLC7A9P82251 487 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 PDK1Q15118 436 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 ALFQ53S48 1182 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 LRRC31Q6UY01 552 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 CHRDL2Q6WN34 429 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 CCHCR1Q8TD31 782 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 AZIN2Q96A70 460 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 RTP4Q96DX8 246 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 CELF6Q96J87 481 aaKnown RBP19.14■□□□□ 0.65
CLN3-206ENST00000360019 ZYG11BQ9C0D3 744 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 AGO1Q9UL18 857 aaKnown RBP19.14■□□□□ 0.65
CLN3-206ENST00000360019 RAD54BQ9Y620 910 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 CLUHO75153 1309 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 DOCK4Q8N1I0 1966 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 CFAP69A5D8W1 941 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 SPDYE4A6NLX3 237 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 HACD1B0YJ81 288 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 FGF19O95750 216 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 FAM153BP0C7A2 387 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 ADCY8P40145 1251 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 PRKD1Q15139 912 aaPredicted RBP19.14■□□□□ 0.65
CLN3-206ENST00000360019 FAM153CQ494X1 144 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 RFWD3Q6PCD5 774 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 GRASPQ7Z6J2 395 aaPredicted RBP19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms