RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CUL4AQ13619 759 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 MAP3K21Q5TCX8 1036 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 SNX30Q5VWJ9 437 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 KLK6Q92876 244 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 AHSPQ9NZD4 102 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 IMPACTQ9P2X3 320 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 PADI4Q9UM07 663 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 SLC16A3O15427 465 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 KLHL18O94889 574 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 GUCA1CO95843 209 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 PIM1P11309 404 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 CCDC130P13994 396 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 PBX3P40426 434 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ALKBH5Q6P6C2 394 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 LINC00523Q86TU6 105 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 VSIG10LQ86VR7 867 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ARL14EPQ8N8R7 260 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 NPLOC4Q8TAT6 608 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 FAM76AQ8TAV0 307 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ARHGEF2Q92974 986 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 FUBP3Q96I24 572 aaKnown RBP eCLIP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 RBPJLQ9UBG7 517 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 RABGEF1Q9UJ41 708 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 PCDHGB3Q9Y5G1 929 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 TADA3O75528 432 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 WFS1O76024 890 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 IDSP22304 550 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ALDH9A1P49189 494 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 SEMG2Q02383 582 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 RBPJQ06330 500 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ITSN1Q15811 1721 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 HGSNATQ68CP4 663 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 CRTC3Q6UUV7 619 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 TRIM59Q8IWR1 403 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 COLGALT1Q8NBJ5 622 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.47□□□□□ -0.895e-6■■■■□ 19.4
LIMCH1-202ENST00000381753 TMEM125Q96AQ2 219 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ZBTB9Q96C00 473 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 EPB41L4AQ9HCS5 686 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 Q9Y3F1 56 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 FAM227AF5H4B4 570 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 FTLP02792 175 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 UQCRBP14927 111 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 ITGB6P18564 788 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 CUL2Q13617 745 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 ZNHIT3Q15649 155 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 KRT71Q3SY84 523 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 DHX40Q8IX18 779 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 ZNF507Q8TCN5 953 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 FAM163AQ96GL9 167 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 DPYSL5Q9BPU6 564 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 SLAMF7Q9NQ25 335 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 PACSIN2Q9UNF0 486 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 MRPS33Q9Y291 106 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 PIAS3Q9Y6X2 628 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 KIDINS220Q9ULH0 1771 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 COL14A1Q05707 1796 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 OR6A2O95222 327 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 HNRNPH1P31943 449 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 BMPR1AP36894 532 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 TRPC1P48995 793 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 PDX1P52945 283 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 RPP38P78345 283 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 KBTBD12Q3ZCT8 623 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 LYSMD4Q5XG99 296 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 TPGS2Q68CL5 300 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 C16orf62Q7Z3J2 963 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 EID3Q8N140 333 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 SNX21Q969T3 373 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 PANX2Q96RD6 677 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 TMEM175Q9BSA9 504 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 PCDHA2Q9Y5H9 948 aa9.46□□□□□ -0.89
LIMCH1-202ENST00000381753 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 SCAMP1O15126 338 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 CPA2P48052 419 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 NDST1P52848 882 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 YWHAZP63104 245 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 PIGHQ14442 188 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 GRM3Q14832 879 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 MINDY4Q4G0A6 757 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 SLC36A4Q6YBV0 504 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 VSIG1Q86XK7 387 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 RFWD2Q8NHY2 731 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 ZCWPW1Q9H0M4 648 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 GKN1Q9NS71 199 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 OR10H1Q9Y4A9 318 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 COLEC10Q9Y6Z7 277 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 CCR3P51677 355 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 ZC3H12BQ5HYM0 836 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 KIAA1211LQ6NV74 962 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 PHOSPHO2Q8TCD6 241 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 WFIKKN2Q8TEU8 576 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 WHAMMQ8TF30 809 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 VAV3Q9UKW4 847 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 L3MBTL1Q9Y468 752 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 C3P01024 1663 aa9.46□□□□□ -0.9
LIMCH1-202ENST00000381753 PEX14O75381 377 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 KRT37O76014 449 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 CER1O95813 267 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 KLHL40Q2TBA0 621 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms