RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PCDHA5Q9Y5H7 936 aa17.82■□□□□ 0.44
VPS29-204ENST00000548259 MYOFQ9NZM1 2061 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 A0A087WV48 116 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 TRABD2BA6NFA1 517 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 CLIC2O15247 247 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 TNFSF14O43557 240 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 EXOC3O60645 756 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 ATXN1LP0C7T5 689 aaKnown RBP17.81■□□□□ 0.44
VPS29-204ENST00000548259 COG7P83436 770 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 C19orf57Q0VDD7 668 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 ORC1Q13415 861 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 NCOA4Q13772 614 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 BMT2Q1RMZ1 405 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 SCARA5Q6ZMJ2 495 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 DBX2Q6ZNG2 339 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 UNC93AQ86WB7 457 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 GOLGA5Q8TBA6 731 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 BAHD1Q8TBE0 780 aaPredicted RBP17.81■□□□□ 0.44
VPS29-204ENST00000548259 HPS3Q969F9 1004 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 UBL7Q96S82 380 aaPredicted RBP17.81■□□□□ 0.44
VPS29-204ENST00000548259 SMOQ99835 787 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 TRIM9Q9C026 710 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 FBXO10Q9UK96 956 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 MORC2Q9Y6X9 1032 aaPredicted RBP17.81■□□□□ 0.44
VPS29-204ENST00000548259 LOC400499M0QZD8 3231 aa17.81■□□□□ 0.44
VPS29-204ENST00000548259 TGFB1I1O43294 461 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 TIMM44O43615 452 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 STX6O43752 255 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 IGLV3-19P01714 112 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 RALAP11233 206 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 RARGP13631 454 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 CCDC130P13994 396 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 HOXD13P35453 343 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 IL12RB1P42701 662 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 ABCG1P45844 678 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 MFAP3P55082 362 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 EPM2AIP1Q7L775 607 aaPredicted RBP17.8■□□□□ 0.44
VPS29-204ENST00000548259 ANKS1BQ7Z6G8 1248 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 CRYBG2Q8N1P7 616 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 ZMIZ2Q8NF64 920 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 ZNF516Q92618 1163 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 PNPLA8Q9NP80 782 aa17.8■□□□□ 0.44
VPS29-204ENST00000548259 A0A1B0GVT2 93 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 KCNJ18B7U540 433 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 DKK1O94907 266 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 PENKP01210 267 aaPredicted RBP17.79■□□□□ 0.44
VPS29-204ENST00000548259 ACO1P21399 889 aaKnown RBP17.79■□□□□ 0.44
VPS29-204ENST00000548259 ENPP2Q13822 863 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 SLC39A14Q15043 492 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 SGSM1Q2NKQ1 1148 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 SERPINA13PQ6UXR4 307 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 Q6ZNB5 142 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 NELFCDQ8IXH7 590 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 TAF4BQ92750 862 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 COL26A1Q96A83 441 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 SLC2A11Q9BYW1 496 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 CIPCQ9C0C6 399 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.79■□□□□ 0.44
VPS29-204ENST00000548259 KBTBD4Q9NVX7 518 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 ELOVL2Q9NXB9 296 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 NAGPAQ9UK23 515 aa17.79■□□□□ 0.44
VPS29-204ENST00000548259 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.79■□□□□ 0.44
VPS29-204ENST00000548259 FLNBO75369 2602 aaKnown RBP17.79■□□□□ 0.44
VPS29-204ENST00000548259 SMG1Q96Q15 3661 aaKnown RBP17.78■□□□□ 0.44
VPS29-204ENST00000548259 CEP192Q8TEP8 1941 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 A0A087X0B3 334 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 CYP26A1O43174 497 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 DFNA5O60443 496 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 STC2O76061 302 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 RPN1P04843 607 aaKnown RBP17.78■□□□□ 0.44
VPS29-204ENST00000548259 EPHX1P07099 455 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 HLA-EP13747 358 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 ADORA2BP29275 332 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 CSNK1EP49674 416 aaKnown RBP17.78■□□□□ 0.44
VPS29-204ENST00000548259 CCT8P50990 548 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 NDST1P52848 882 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 ZNF234Q14588 700 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 CCDC157Q569K6 752 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 C12orf56Q8IXR9 622 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 IQUBQ8NA54 791 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 IGSF8Q969P0 613 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 BBC3Q96PG8 261 aaPredicted RBP17.78■□□□□ 0.44
VPS29-204ENST00000548259 OSGEPQ9NPF4 335 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 FAM49BQ9NUQ9 324 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 TOR4AQ9NXH8 423 aa17.78■□□□□ 0.44
VPS29-204ENST00000548259 TFIP11Q9UBB9 837 aaKnown RBP17.78■□□□□ 0.44
VPS29-204ENST00000548259 SETXQ7Z333 2677 aaKnown RBP17.78■□□□□ 0.44
VPS29-204ENST00000548259 URB1O60287 2271 aaKnown RBP17.77■□□□□ 0.44
VPS29-204ENST00000548259 A0A1W2PQH9 124 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 TK2O00142 265 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 BEST1O76090 585 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 CDK4P11802 303 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 HNF1BP35680 557 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 GRIA4P48058 902 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 PGFP49763 221 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 SMAD1Q15797 465 aaKnown RBP17.77■□□□□ 0.44
VPS29-204ENST00000548259 GEN1Q17RS7 908 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 CNNM4Q6P4Q7 775 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 LRRC69Q6ZNQ3 347 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 ADAT2Q7Z6V5 191 aaKnown RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms