RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeastyeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB4YOR171C HUA1P40325 198 aa1.64□□□□□ -2.15
LCB4YOR171C YHR213W-BQ8TGK1 99 aa1.64□□□□□ -2.15
LCB4YOR171C YOR008C-AQ3E7B9 74 aa1.63□□□□□ -2.15
LCB4YOR171C TOM7P53507 60 aa1.63□□□□□ -2.15
LCB4YOR171C YLR342W-AQ3E810 57 aa1.63□□□□□ -2.15
LCB4YOR171C RPS27BP38711 82 aa1.62□□□□□ -2.15
LCB4YOR171C SIP18P50263 79 aa1.61□□□□□ -2.15
LCB4YOR171C YCR108CQ3E819 63 aa1.6□□□□□ -2.15
LCB4YOR171C SEN1Q00416 2231 aaKnown RBP1.59□□□□□ -2.15
LCB4YOR171C VPS13Q07878 3144 aa1.58□□□□□ -2.16
LCB4YOR171C YJL133C-AQ3E7A3 74 aa1.57□□□□□ -2.16
LCB4YOR171C YBL044WP38194 122 aa1.56□□□□□ -2.16
LCB4YOR171C YBR016WP38216 128 aa1.56□□□□□ -2.16
LCB4YOR171C YLR307C-AQ3E825 87 aa1.55□□□□□ -2.16
LCB4YOR171C YGR146C-AQ8TGT9 53 aa1.54□□□□□ -2.16
LCB4YOR171C YLL006W-AQ3E814 58 aa1.52□□□□□ -2.17
LCB4YOR171C YOL164W-AQ3E7A5 60 aa1.52□□□□□ -2.17
LCB4YOR171C RPL37BP51402 88 aaKnown RBP1.51□□□□□ -2.17
LCB4YOR171C DDR2P89113 61 aa1.5□□□□□ -2.17
LCB4YOR171C YGL258W-AQ3E740 77 aa1.48□□□□□ -2.17
LCB4YOR171C CSF1Q12150 2958 aa1.48□□□□□ -2.17
LCB4YOR171C YLR157W-EP0CF00 54 aa1.48□□□□□ -2.17
LCB4YOR171C RPL29P05747 59 aaPredicted RBP1.47□□□□□ -2.17
LCB4YOR171C IRA2P19158 3079 aa1.47□□□□□ -2.17
LCB4YOR171C IRA1P18963 3092 aa1.46□□□□□ -2.18
LCB4YOR171C YDR524C-BQ3E6R4 66 aa1.46□□□□□ -2.18
LCB4YOR171C TAO3P40468 2376 aa1.45□□□□□ -2.18
LCB4YOR171C YJL127C-BQ3E828 52 aa1.43□□□□□ -2.18
LCB4YOR171C YOR316C-AQ3E806 69 aa1.42□□□□□ -2.18
LCB4YOR171C FMP27Q06179 2628 aa1.41□□□□□ -2.18
LCB4YOR171C TRA1P38811 3744 aa1.41□□□□□ -2.18
LCB4YOR171C RPL37AP49166 88 aaKnown RBP1.4□□□□□ -2.19
LCB4YOR171C NCE101Q02820 53 aa1.38□□□□□ -2.19
LCB4YOR171C YPR117WQ06116 2489 aa1.38□□□□□ -2.19
LCB4YOR171C TEL1P38110 2787 aa1.36□□□□□ -2.19
LCB4YOR171C GCN1P33892 2672 aaKnown RBP1.36□□□□□ -2.19
LCB4YOR171C YIL046W-AQ3E7Z4 54 aa1.35□□□□□ -2.19
LCB4YOR171C YOR072W-BQ3E832 53 aa1.35□□□□□ -2.19
LCB4YOR171C YDR034W-BQ6Q5X2 51 aa1.35□□□□□ -2.19
LCB4YOR171C TOR2P32600 2474 aaKnown RBP1.35□□□□□ -2.19
LCB4YOR171C PMP3P87284 55 aa1.31□□□□□ -2.2
LCB4YOR171C YHR073W-AP0C5N7 58 aa1.3□□□□□ -2.2
LCB4YOR171C PRP8P33334 2413 aaKnown RBP1.29□□□□□ -2.2
LCB4YOR171C YDR034C-AP0C289 58 aa1.27□□□□□ -2.21
LCB4YOR171C HOR7Q05827 59 aa1.26□□□□□ -2.21
LCB4YOR171C YMR105W-AQ8TGS8 64 aa1.26□□□□□ -2.21
LCB4YOR171C RPL39P04650 51 aa1.25□□□□□ -2.21
LCB4YOR171C NUM1Q00402 2748 aa1.24□□□□□ -2.21
LCB4YOR171C RPS29BP41058 56 aaKnown RBP1.23□□□□□ -2.21
LCB4YOR171C MEC1P38111 2368 aa1.23□□□□□ -2.21
LCB4YOR171C TOR1P35169 2470 aa1.22□□□□□ -2.21
LCB4YOR171C YBR056W-AI2HB52 66 aa1.21□□□□□ -2.22
LCB4YOR171C UTP20P35194 2493 aaKnown RBP1.2□□□□□ -2.22
LCB4YOR171C DYN1P36022 4092 aa1.18□□□□□ -2.22
LCB4YOR171C Q0297Q9ZZV8 51 aa1.15□□□□□ -2.23
LCB4YOR171C RPS29AP41057 56 aaKnown RBP1.1□□□□□ -2.23
LCB4YOR171C YLL066W-BQ8TGJ7 56 aa1.09□□□□□ -2.24
LCB4YOR171C YML054C-AQ3E809 52 aa1.02□□□□□ -2.25
LCB4YOR171C CUP1-1P0CX80 61 aa1.01□□□□□ -2.25
LCB4YOR171C CUP1-2P0CX81 61 aa1.01□□□□□ -2.25
LCB4YOR171C MDN1Q12019 4910 aaKnown RBP1.01□□□□□ -2.25
LCB4YOR171C YHR050W-AQ05451 56 aa0.99□□□□□ -2.25
LCB4YOR171C Q0017Q9ZZX8 53 aa0.98□□□□□ -2.25
Retrieved 63 of 5,963 RNA–protein pairs in 44.8 ms