RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W YOL097W-AQ3E7Y9 61 aa5.21□□□□□ -1.58
UFD1YGR048W YGR146C-AQ8TGT9 53 aa5.21□□□□□ -1.58
UFD1YGR048W YMR230W-AQ3E7B5 62 aa5.19□□□□□ -1.58
UFD1YGR048W YLL066W-BQ8TGJ7 56 aa5.19□□□□□ -1.58
UFD1YGR048W YDR034W-BQ6Q5X2 51 aa5.18□□□□□ -1.58
UFD1YGR048W YGL260WP53056 76 aa5.14□□□□□ -1.59
UFD1YGR048W COX8P04039 78 aa5.13□□□□□ -1.59
UFD1YGR048W YDR210WQ03482 75 aa5.13□□□□□ -1.59
UFD1YGR048W YCL042WP25572 119 aa5.09□□□□□ -1.59
UFD1YGR048W YHR073W-AP0C5N7 58 aa5.08□□□□□ -1.6
UFD1YGR048W YEL014CP39999 101 aa5.08□□□□□ -1.6
UFD1YGR048W RPL37BP51402 88 aaKnown RBP5.07□□□□□ -1.6
UFD1YGR048W Q0297Q9ZZV8 51 aa5.05□□□□□ -1.6
UFD1YGR048W GCN1P33892 2672 aaKnown RBP5.04□□□□□ -1.6
UFD1YGR048W FMP27Q06179 2628 aa5.03□□□□□ -1.6
UFD1YGR048W YOR394C-AQ8TGJ0 55 aa5.03□□□□□ -1.6
UFD1YGR048W YOR316C-AQ3E806 69 aa5.02□□□□□ -1.61
UFD1YGR048W OLI1P61829 76 aa5.01□□□□□ -1.61
UFD1YGR048W RPL43AP0CX25 92 aaKnown RBP4.98□□□□□ -1.61
UFD1YGR048W RPL43BP0CX26 92 aa4.98□□□□□ -1.61
UFD1YGR048W YJR085CP47131 105 aaKnown RBP4.97□□□□□ -1.61
UFD1YGR048W YER078W-AQ3E7A2 54 aa4.97□□□□□ -1.61
UFD1YGR048W TRA1P38811 3744 aa4.95□□□□□ -1.62
UFD1YGR048W YBR016WP38216 128 aa4.95□□□□□ -1.62
UFD1YGR048W CMC4Q3E7A9 73 aa4.95□□□□□ -1.62
UFD1YGR048W YCR108CQ3E819 63 aa4.93□□□□□ -1.62
UFD1YGR048W IRA1P18963 3092 aa4.93□□□□□ -1.62
UFD1YGR048W YER175W-AQ8TGU4 54 aa4.92□□□□□ -1.62
UFD1YGR048W YBL044WP38194 122 aa4.87□□□□□ -1.63
UFD1YGR048W PRP8P33334 2413 aaKnown RBP4.85□□□□□ -1.63
UFD1YGR048W YPR117WQ06116 2489 aa4.84□□□□□ -1.63
UFD1YGR048W COX7P10174 60 aa4.83□□□□□ -1.64
UFD1YGR048W YDR034C-AP0C289 58 aa4.8□□□□□ -1.64
UFD1YGR048W YJL144WP47009 104 aa4.8□□□□□ -1.64
UFD1YGR048W UTP20P35194 2493 aaKnown RBP4.8□□□□□ -1.64
UFD1YGR048W YPR195CQ06594 109 aa4.79□□□□□ -1.64
UFD1YGR048W YBR056W-AI2HB52 66 aa4.77□□□□□ -1.65
UFD1YGR048W MEC1P38111 2368 aa4.71□□□□□ -1.66
UFD1YGR048W YHR032W-AP0C5N6 59 aa4.7□□□□□ -1.66
UFD1YGR048W LCL1Q02786 101 aa4.69□□□□□ -1.66
UFD1YGR048W YFL067WP43537 175 aa4.58□□□□□ -1.68
UFD1YGR048W RPL37AP49166 88 aaKnown RBP4.58□□□□□ -1.68
UFD1YGR048W YBR072C-AQ3E794 53 aa4.57□□□□□ -1.68
UFD1YGR048W TOR2P32600 2474 aaKnown RBP4.52□□□□□ -1.69
UFD1YGR048W HHY1P39982 102 aa4.48□□□□□ -1.69
UFD1YGR048W YOR072W-BQ3E832 53 aa4.47□□□□□ -1.69
UFD1YGR048W TEL1P38110 2787 aa4.44□□□□□ -1.7
UFD1YGR048W YJL009WP47078 108 aa4.39□□□□□ -1.71
UFD1YGR048W YAL067W-AQ8TGK6 75 aa4.35□□□□□ -1.71
UFD1YGR048W NUM1Q00402 2748 aa4.29□□□□□ -1.72
UFD1YGR048W YML054C-AQ3E809 52 aa4.18□□□□□ -1.74
UFD1YGR048W TOR1P35169 2470 aa4.11□□□□□ -1.75
UFD1YGR048W Q0017Q9ZZX8 53 aa4.04□□□□□ -1.76
UFD1YGR048W DYN1P36022 4092 aa3.98□□□□□ -1.77
UFD1YGR048W YOL164W-AQ3E7A5 60 aa3.87□□□□□ -1.79
UFD1YGR048W CUP1-1P0CX80 61 aa3.52□□□□□ -1.85
UFD1YGR048W CUP1-2P0CX81 61 aa3.52□□□□□ -1.85
UFD1YGR048W YHR050W-AQ05451 56 aa3.5□□□□□ -1.85
UFD1YGR048W YHR086W-AQ3E746 53 aa3.49□□□□□ -1.85
UFD1YGR048W YLR157W-EP0CF00 54 aa3.3□□□□□ -1.88
UFD1YGR048W RPS29AP41057 56 aaKnown RBP3.28□□□□□ -1.88
UFD1YGR048W MDN1Q12019 4910 aaKnown RBP3.08□□□□□ -1.92
UFD1YGR048W RPS29BP41058 56 aaKnown RBP2.89□□□□□ -1.95
Retrieved 63 of 5,963 RNA–protein pairs in 9.3 ms