RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 WBP2Q969T9 261 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 MSANTD3Q96H12 275 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 FAXDC2Q96IV6 333 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 CNOT6LQ96LI5 555 aaKnown RBP8.73□□□□□ -1.01
HDAC6-221ENST00000477561 NT5C1BQ96P26 610 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 NACA2Q9H009 215 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 CHRDQ9H2X0 955 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 FBXO44Q9H4M3 255 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 NMUR1Q9HB89 426 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 FBRSL1Q9HCM7 1045 aaKnown RBP8.73□□□□□ -1.01
HDAC6-221ENST00000477561 RTN4Q9NQC3 1192 aaKnown RBP8.73□□□□□ -1.01
HDAC6-221ENST00000477561 COMMD8Q9NX08 183 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 OSER1Q9NX31 292 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 PCDHB4Q9Y5E5 795 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.73□□□□□ -1.01
HDAC6-221ENST00000477561 MIA3Q5JRA6 1907 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 ANAPC1Q9H1A4 1944 aa8.73□□□□□ -1.01
HDAC6-221ENST00000477561 ZNF638Q14966 1978 aaKnown RBP8.73□□□□□ -1.01
HDAC6-221ENST00000477561 KIF26AQ9ULI4 1882 aaPredicted RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 USP34Q70CQ2 3546 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 RNF225M0QZC1 329 aaPredicted RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 TULP2O00295 520 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 MDM4O15151 490 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 TLR5O60602 858 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 GFRA3O60609 400 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 FGFR1OPO95684 399 aaKnown RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 EGFP01133 1207 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 PFKLP17858 780 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 TBXAS1P24557 533 aaPredicted RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 HOXC13P31276 330 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 MAGEA9P43362 315 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 KIF11P52732 1056 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 MARSP56192 900 aaKnown RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 YWHAEP62258 255 aaKnown RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 SATB1Q01826 763 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 CETN1Q12798 172 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 CCINQ13939 588 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 LRRC32Q14392 662 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 TPD52L1Q16890 204 aaPredicted RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 SGO2Q562F6 1265 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 HSP90AA4PQ58FG1 418 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 SNX30Q5VWJ9 437 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 ARHGAP17Q68EM7 881 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 FSTL4Q6MZW2 842 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 C1orf228Q6PIY5 440 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 SARM1Q6SZW1 724 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 ASCL5Q7RTU5 278 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 PIGZQ86VD9 579 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 TTC30AQ86WT1 665 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 ADGRG2Q8IZP9 1017 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 UBR7Q8N806 425 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 ANKRD52Q8NB46 1076 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 NDRG1Q92597 394 aaKnown RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 ATP2A3Q93084 1043 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 NKD2Q969F2 451 aaPredicted RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 ZFRQ96KR1 1074 aaKnown RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 CRACR2AQ9BSW2 395 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 INTS2Q9H0H0 1204 aaKnown RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 TLR8Q9NR97 1041 aaKnown RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 POLR3BQ9NW08 1133 aaPredicted RBP8.72□□□□□ -1.01
HDAC6-221ENST00000477561 C2orf42Q9NWW7 574 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 NAGPAQ9UK23 515 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 TSPAN16Q9UKR8 245 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 SCML2Q9UQR0 700 aa8.72□□□□□ -1.01
HDAC6-221ENST00000477561 PRR23AA6NEV1 266 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 PROB1E7EW31 1015 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 PIK3R2O00459 728 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 TRDMT1O14717 391 aaKnown RBP8.71□□□□□ -1.02
HDAC6-221ENST00000477561 PMM2O15305 246 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 P4HA2O15460 535 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 NFATC1O95644 943 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 CYP17A1P05093 508 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 VDRP11473 427 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 RARGP13631 454 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 TCF3P15923 654 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 BRD2P25440 801 aaKnown RBP8.71□□□□□ -1.02
HDAC6-221ENST00000477561 ATP5C1P36542 298 aaKnown RBP8.71□□□□□ -1.02
HDAC6-221ENST00000477561 MTIF2P46199 727 aaKnown RBP8.71□□□□□ -1.02
HDAC6-221ENST00000477561 CXCL12P48061 93 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 SLC6A11P48066 632 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 SLC8A3P57103 927 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 AMPD2Q01433 879 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 APBA1Q02410 837 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 PDE4CQ08493 712 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 GRSF1Q12849 480 aaKnown RBP eCLIP8.71□□□□□ -1.02
HDAC6-221ENST00000477561 NR1H3Q13133 447 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 NCAPHQ15003 741 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 DHCR24Q15392 516 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 TMEM196Q5HYL7 178 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 DGKKQ5KSL6 1271 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 PKN3Q6P5Z2 889 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 GJB7Q6PEY0 223 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 SCD5Q86SK9 330 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 IRF2BP1Q8IU81 584 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 TFAP2BQ92481 460 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 CD101Q93033 1021 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 KREMEN1Q96MU8 473 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 P2RY13Q9BPV8 354 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 PNPLA8Q9NP80 782 aa8.71□□□□□ -1.02
HDAC6-221ENST00000477561 UBE2TQ9NPD8 197 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms