RNA–Protein interactions for RNA: YIR040C

YIR040C, Transcript of Dubious open reading frame, yeast

Gene YIR040C, Length 333 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YIR040C	YIR040C	IOC4	Q04213	475 aa		4.36	□□□□□ -1.71
YIR040C	YIR040C	DPH6	Q12429	685 aa		4.36	□□□□□ -1.71
YIR040C	YIR040C	TOP1	P04786	769 aa		4.35	□□□□□ -1.71
YIR040C	YIR040C	VMA3	P25515	160 aa		4.35	□□□□□ -1.71
YIR040C	YIR040C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
YIR040C	YIR040C	MSC7	P38694	644 aa		4.35	□□□□□ -1.71
YIR040C	YIR040C	QDR2	P40474	542 aa		4.35	□□□□□ -1.71
YIR040C	YIR040C	SSA1	P10591	642 aa	Known RBP	4.34	□□□□□ -1.71
YIR040C	YIR040C	RPC31	P17890	251 aa		4.34	□□□□□ -1.71
YIR040C	YIR040C	BOL3	P39724	118 aa		4.34	□□□□□ -1.71
YIR040C	YIR040C	SKP1	P52286	194 aa		4.34	□□□□□ -1.71
YIR040C	YIR040C	YNR040W	P53736	256 aa		4.34	□□□□□ -1.71
YIR040C	YIR040C	CUS1	Q02554	436 aa	Predicted RBP	4.34	□□□□□ -1.71
YIR040C	YIR040C	TY1A-DR2	Q03964	440 aa	Known RBP	4.34	□□□□□ -1.71
YIR040C	YIR040C	FPS1	P23900	669 aa		4.33	□□□□□ -1.72
YIR040C	YIR040C	KTR2	P33550	425 aa		4.33	□□□□□ -1.72
YIR040C	YIR040C	RPL34A	P87262	121 aa	Predicted RBP	4.32	□□□□□ -1.72
YIR040C	YIR040C	GPM1	P00950	247 aa	Known RBP	4.31	□□□□□ -1.72
YIR040C	YIR040C	BSD2	P38356	321 aa		4.31	□□□□□ -1.72
YIR040C	YIR040C	KRI1	P42846	591 aa	Known RBP	4.31	□□□□□ -1.72
YIR040C	YIR040C	LSO1	Q3E827	93 aa		4.31	□□□□□ -1.72
YIR040C	YIR040C	RPB10	P22139	70 aa		4.3	□□□□□ -1.72
YIR040C	YIR040C	GEF1	P37020	779 aa		4.3	□□□□□ -1.72
YIR040C	YIR040C	LDH1	P38139	375 aa		4.3	□□□□□ -1.72
YIR040C	YIR040C	ITC1	P53125	1264 aa		4.3	□□□□□ -1.72
YIR040C	YIR040C	SNU71	P53207	620 aa	Known RBP	4.3	□□□□□ -1.72
YIR040C	YIR040C	APC11	Q12157	165 aa		4.3	□□□□□ -1.72
YIR040C	YIR040C	MSN1	P22148	382 aa		4.29	□□□□□ -1.72
YIR040C	YIR040C	RRN6	P32786	894 aa		4.29	□□□□□ -1.72
YIR040C	YIR040C	MDJ1	P35191	511 aa		4.29	□□□□□ -1.72
YIR040C	YIR040C	APM2	P38700	605 aa		4.29	□□□□□ -1.72
YIR040C	YIR040C	DYS1	P38791	387 aa		4.29	□□□□□ -1.72
YIR040C	YIR040C	NOP2	P40991	618 aa	Known RBP	4.29	□□□□□ -1.72
YIR040C	YIR040C	YFL066C	P43538	392 aa		4.29	□□□□□ -1.72
YIR040C	YIR040C	YOR296W	Q08748	1289 aa		4.29	□□□□□ -1.72
YIR040C	YIR040C	FUR4	P05316	633 aa	Known RBP	4.28	□□□□□ -1.72
YIR040C	YIR040C	PDC5	P16467	563 aa	Known RBP	4.28	□□□□□ -1.72
YIR040C	YIR040C	NCL1	P38205	684 aa	Known RBP	4.28	□□□□□ -1.72
YIR040C	YIR040C	PRK1	P40494	810 aa		4.28	□□□□□ -1.72
YIR040C	YIR040C	SBE2	P42223	864 aa	Known RBP	4.28	□□□□□ -1.72
YIR040C	YIR040C	KAR5	Q04746	504 aa		4.28	□□□□□ -1.72
YIR040C	YIR040C	MRP10	O75012	95 aa		4.27	□□□□□ -1.73
YIR040C	YIR040C	AI1	P03875	834 aa		4.27	□□□□□ -1.73
YIR040C	YIR040C	CDC3	P32457	520 aa	Known RBP	4.27	□□□□□ -1.73
YIR040C	YIR040C	GIP1	P38229	639 aa		4.27	□□□□□ -1.73
YIR040C	YIR040C	SUT1	P53032	299 aa	Known RBP	4.27	□□□□□ -1.73
YIR040C	YIR040C	HEH2	Q03281	663 aa		4.27	□□□□□ -1.73
YIR040C	YIR040C	RPP1A	P05318	106 aa	Predicted RBP	4.26	□□□□□ -1.73
YIR040C	YIR040C	IDI1	P15496	288 aa		4.26	□□□□□ -1.73
YIR040C	YIR040C	KNS1	P32350	737 aa	Predicted RBP	4.26	□□□□□ -1.73
YIR040C	YIR040C	HXT8	P40886	569 aa		4.26	□□□□□ -1.73
YIR040C	YIR040C	RGD2	P43556	714 aa		4.26	□□□□□ -1.73
YIR040C	YIR040C	THI72	Q08579	599 aa		4.26	□□□□□ -1.73
YIR040C	YIR040C	ISW1	P38144	1129 aa		4.25	□□□□□ -1.73
YIR040C	YIR040C	GLO3	P38682	493 aa	Known RBP	4.25	□□□□□ -1.73
YIR040C	YIR040C	QDR1	P40475	563 aa		4.25	□□□□□ -1.73
YIR040C	YIR040C	EMG1	Q06287	252 aa	Known RBP	4.25	□□□□□ -1.73
YIR040C	YIR040C	TRL1	P09880	827 aa	Known RBP	4.24	□□□□□ -1.73
YIR040C	YIR040C	ERP5	P38819	212 aa		4.24	□□□□□ -1.73
YIR040C	YIR040C	YER156C	P40093	338 aa	Known RBP	4.24	□□□□□ -1.73
YIR040C	YIR040C	YIL165C	P40446	119 aa		4.24	□□□□□ -1.73
YIR040C	YIR040C	ATG1	P53104	897 aa		4.24	□□□□□ -1.73
YIR040C	YIR040C	NSG2	P53898	299 aa		4.24	□□□□□ -1.73
YIR040C	YIR040C	HAT1	Q12341	374 aa		4.24	□□□□□ -1.73
YIR040C	YIR040C	NTA1	P40354	457 aa		4.23	□□□□□ -1.73
YIR040C	YIR040C	RAD55	P38953	406 aa		4.22	□□□□□ -1.73
YIR040C	YIR040C	ICP55	P40051	511 aa		4.22	□□□□□ -1.73
YIR040C	YIR040C	MDJ2	P42834	146 aa		4.22	□□□□□ -1.73
YIR040C	YIR040C	TDA6	Q06466	467 aa		4.22	□□□□□ -1.73
YIR040C	YIR040C	TIF6	Q12522	245 aa	Known RBP	4.22	□□□□□ -1.73
YIR040C	YIR040C	YBL113C	Q7M4S9	792 aa		4.22	□□□□□ -1.73
YIR040C	YIR040C	NAR1	P23503	491 aa	Known RBP	4.21	□□□□□ -1.74
YIR040C	YIR040C	PGM2	P37012	569 aa	Known RBP	4.21	□□□□□ -1.74
YIR040C	YIR040C	GRS1	P38088	690 aa	Known RBP	4.21	□□□□□ -1.74
YIR040C	YIR040C	BOI2	P39969	1040 aa		4.21	□□□□□ -1.74
YIR040C	YIR040C	FIR1	P40020	876 aa		4.21	□□□□□ -1.74
YIR040C	YIR040C	PPT1	P53043	513 aa		4.21	□□□□□ -1.74
YIR040C	YIR040C	YNR014W	P53719	212 aa		4.21	□□□□□ -1.74
YIR040C	YIR040C	PHM7	Q12252	991 aa		4.21	□□□□□ -1.74
YIR040C	YIR040C	SMC1	P32908	1225 aa		4.2	□□□□□ -1.74
YIR040C	YIR040C	AIM46	P38885	310 aa		4.2	□□□□□ -1.74
YIR040C	YIR040C	PSY2	P40164	858 aa		4.2	□□□□□ -1.74
YIR040C	YIR040C	YJL181W	P46987	611 aa		4.2	□□□□□ -1.74
YIR040C	YIR040C	ACF4	P47129	309 aa		4.2	□□□□□ -1.74
YIR040C	YIR040C	GIS4	Q04233	774 aa		4.2	□□□□□ -1.74
YIR040C	YIR040C	MNL2	Q12205	849 aa		4.2	□□□□□ -1.74
YIR040C	YIR040C	FRT1	Q99332	602 aa		4.2	□□□□□ -1.74
YIR040C	YIR040C	DEF1	P35732	738 aa	Known RBP	4.19	□□□□□ -1.74
YIR040C	YIR040C	IRS4	P36115	615 aa	Known RBP	4.19	□□□□□ -1.74
YIR040C	YIR040C	ALG14	P38242	237 aa		4.19	□□□□□ -1.74
YIR040C	YIR040C	MCX1	P38323	520 aa	Predicted RBP	4.19	□□□□□ -1.74
YIR040C	YIR040C	SUB1	P54000	292 aa	Known RBP	4.19	□□□□□ -1.74
YIR040C	YIR040C	YCK2	P23292	546 aa	Known RBP	4.18	□□□□□ -1.74
YIR040C	YIR040C	TFA2	P36145	328 aa		4.18	□□□□□ -1.74
YIR040C	YIR040C	MET1	P36150	593 aa		4.18	□□□□□ -1.74
YIR040C	YIR040C	SSF1	P38789	453 aa	Predicted RBP	4.18	□□□□□ -1.74
YIR040C	YIR040C	FPR3	P38911	411 aa	Known RBP	4.18	□□□□□ -1.74
YIR040C	YIR040C	ALD3	P54114	506 aa		4.18	□□□□□ -1.74
YIR040C	YIR040C	TRS120	Q04183	1289 aa		4.18	□□□□□ -1.74
YIR040C	YIR040C	NUT2	Q06213	157 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 39.1 ms