RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS41	YDR080W	CCP1	P00431	361 aa		4.25	□□□□□ -1.73
VPS41	YDR080W	SLA1	P32790	1244 aa		4.25	□□□□□ -1.73
VPS41	YDR080W	GLY1	P37303	387 aa	Known RBP	4.25	□□□□□ -1.73
VPS41	YDR080W	SRF1	Q12516	437 aa		4.25	□□□□□ -1.73
VPS41	YDR080W	NUP157	P40064	1391 aa	Known RBP	4.25	□□□□□ -1.73
VPS41	YDR080W	WTM2	Q12206	467 aa		4.25	□□□□□ -1.73
VPS41	YDR080W	NAM8	Q00539	523 aa	Known RBP	4.24	□□□□□ -1.73
VPS41	YDR080W	YPR204W	Q08995	1032 aa		4.24	□□□□□ -1.73
VPS41	YDR080W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.24	□□□□□ -1.73
VPS41	YDR080W	YIR007W	P40566	764 aa		4.24	□□□□□ -1.73
VPS41	YDR080W	MIP1	P15801	1254 aa		4.23	□□□□□ -1.73
VPS41	YDR080W	VTC4	P47075	721 aa		4.23	□□□□□ -1.73
VPS41	YDR080W	LSC2	P53312	427 aa		4.23	□□□□□ -1.73
VPS41	YDR080W	CAF120	P53836	1060 aa		4.23	□□□□□ -1.73
VPS41	YDR080W	YPQ2	Q06328	317 aa		4.23	□□□□□ -1.73
VPS41	YDR080W	OSH7	P38755	437 aa		4.23	□□□□□ -1.73
VPS41	YDR080W	DAL1	P32375	460 aa		4.22	□□□□□ -1.73
VPS41	YDR080W	SHM1	P37292	490 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS41	YDR080W	CDC19	P00549	500 aa	Known RBP	4.22	□□□□□ -1.73
VPS41	YDR080W	UTR2	P32623	467 aa		4.22	□□□□□ -1.73
VPS41	YDR080W	TTI1	P36097	1038 aa		4.22	□□□□□ -1.73
VPS41	YDR080W	SWI5	P08153	709 aa		4.21	□□□□□ -1.74
VPS41	YDR080W	UTP7	P40055	554 aa	Known RBP	4.21	□□□□□ -1.74
VPS41	YDR080W	AIM9	P40053	627 aa	Known RBP	4.21	□□□□□ -1.74
VPS41	YDR080W	SCW11	P53189	542 aa		4.21	□□□□□ -1.74
VPS41	YDR080W	RPS31	P05759	152 aa	Known RBP	4.2	□□□□□ -1.74
VPS41	YDR080W	ACS2	P52910	683 aa	Known RBP	4.2	□□□□□ -1.74
VPS41	YDR080W	CAT8	P39113	1433 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	SUM1	P46676	1062 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	TY1A-MR1	Q04215	440 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	USO1	P25386	1790 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	ROG3	P43602	733 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	HGH1	P48362	394 aa	Known RBP	4.2	□□□□□ -1.74
VPS41	YDR080W	MSN5	P52918	1224 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	YNL165W	P53891	406 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	UBP2	Q01476	1272 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	RGA2	Q06407	1009 aa		4.2	□□□□□ -1.74
VPS41	YDR080W	PDI1	P17967	522 aa	Known RBP	4.19	□□□□□ -1.74
VPS41	YDR080W	ROM1	P53046	1155 aa		4.19	□□□□□ -1.74
VPS41	YDR080W	TSC13	Q99190	310 aa		4.19	□□□□□ -1.74
VPS41	YDR080W	SEC7	P11075	2009 aa	Known RBP	4.19	□□□□□ -1.74
VPS41	YDR080W	BNR1	P40450	1375 aa		4.18	□□□□□ -1.74
VPS41	YDR080W	YBT1	P32386	1661 aa		4.18	□□□□□ -1.74
VPS41	YDR080W	DAT1	P13483	248 aa	Known RBP	4.18	□□□□□ -1.74
VPS41	YDR080W	PUP1	P25043	261 aa		4.18	□□□□□ -1.74
VPS41	YDR080W	CPS1	P27614	576 aa		4.18	□□□□□ -1.74
VPS41	YDR080W	TGL4	P36165	910 aa		4.18	□□□□□ -1.74
VPS41	YDR080W	KTR7	P40504	517 aa		4.18	□□□□□ -1.74
VPS41	YDR080W	RPL34B	P40525	121 aa	Known RBP	4.18	□□□□□ -1.74
VPS41	YDR080W	YLR346C	Q06139	101 aa		4.18	□□□□□ -1.74
VPS41	YDR080W	ATG3	P40344	310 aa		4.17	□□□□□ -1.74
VPS41	YDR080W	NUP188	P52593	1655 aa	Known RBP	4.17	□□□□□ -1.74
VPS41	YDR080W	RPS6A	P0CX37	236 aa	Known RBP	4.17	□□□□□ -1.74
VPS41	YDR080W	RPS6B	P0CX38	236 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS41	YDR080W	JJJ2	P46997	583 aa		4.17	□□□□□ -1.74
VPS41	YDR080W	NTH2	P35172	780 aa		4.17	□□□□□ -1.74
VPS41	YDR080W	NOB1	Q08444	459 aa	Known RBP	4.17	□□□□□ -1.74
VPS41	YDR080W	DLD3	P39976	496 aa	Known RBP	4.16	□□□□□ -1.74
VPS41	YDR080W	HPF1	Q05164	967 aa		4.16	□□□□□ -1.74
VPS41	YDR080W	SUV3	P32580	737 aa		4.16	□□□□□ -1.74
VPS41	YDR080W	YML083C	Q04526	418 aa		4.16	□□□□□ -1.74
VPS41	YDR080W	VMR1	P38735	1592 aa		4.16	□□□□□ -1.74
VPS41	YDR080W	GAL2	P13181	574 aa		4.15	□□□□□ -1.74
VPS41	YDR080W	PHO87	P25360	923 aa		4.15	□□□□□ -1.74
VPS41	YDR080W	YAP3	P38749	330 aa		4.15	□□□□□ -1.74
VPS41	YDR080W	MAK10	Q02197	733 aa		4.15	□□□□□ -1.75
VPS41	YDR080W	PSH1	Q12161	406 aa		4.15	□□□□□ -1.75
VPS41	YDR080W	IML1	P47170	1584 aa		4.15	□□□□□ -1.75
VPS41	YDR080W	ALD2	P47771	506 aa		4.14	□□□□□ -1.75
VPS41	YDR080W	CUZ1	P53899	274 aa		4.14	□□□□□ -1.75
VPS41	YDR080W	UBP1	P25037	809 aa		4.14	□□□□□ -1.75
VPS41	YDR080W	ECM23	Q02710	187 aa		4.14	□□□□□ -1.75
VPS41	YDR080W	IRE1	P32361	1115 aa		4.13	□□□□□ -1.75
VPS41	YDR080W	TBS1	P38114	1094 aa		4.13	□□□□□ -1.75
VPS41	YDR080W	URN1	Q06525	465 aa	Known RBP	4.13	□□□□□ -1.75
VPS41	YDR080W	PDC6	P26263	563 aa	Known RBP	4.13	□□□□□ -1.75
VPS41	YDR080W	SIS2	P36024	562 aa		4.13	□□□□□ -1.75
VPS41	YDR080W	HXT5	P38695	592 aa		4.13	□□□□□ -1.75
VPS41	YDR080W	UBP15	P50101	1230 aa		4.13	□□□□□ -1.75
VPS41	YDR080W	YSP2	Q06681	1438 aa		4.11	□□□□□ -1.75
VPS41	YDR080W	RPP2B	P02400	110 aa	Known RBP	4.11	□□□□□ -1.75
VPS41	YDR080W	CYT1	P07143	309 aa		4.11	□□□□□ -1.75
VPS41	YDR080W	MCM1	P11746	286 aa		4.11	□□□□□ -1.75
VPS41	YDR080W	NGR1	P32831	672 aa	Known RBP	4.11	□□□□□ -1.75
VPS41	YDR080W	TPS3	P38426	1054 aa	Known RBP	4.11	□□□□□ -1.75
VPS41	YDR080W	GAS4	Q08271	471 aa		4.11	□□□□□ -1.75
VPS41	YDR080W	HAP4	P14064	554 aa		4.11	□□□□□ -1.75
VPS41	YDR080W	MLF3	P32047	452 aa		4.11	□□□□□ -1.75
VPS41	YDR080W	CAB1	Q04430	367 aa		4.1	□□□□□ -1.75
VPS41	YDR080W	YFL034W	P43564	1073 aa		4.1	□□□□□ -1.75
VPS41	YDR080W	SUB2	Q07478	446 aa	Known RBP	4.1	□□□□□ -1.75
VPS41	YDR080W	DIT1	P21623	536 aa		4.09	□□□□□ -1.75
VPS41	YDR080W	JJJ3	P47138	172 aa		4.09	□□□□□ -1.75
VPS41	YDR080W	SYT1	Q06836	1226 aa		4.09	□□□□□ -1.75
VPS41	YDR080W	ALA1	P40825	983 aa	Known RBP	4.09	□□□□□ -1.75
VPS41	YDR080W	SPR3	P41901	512 aa		4.09	□□□□□ -1.75
VPS41	YDR080W	RLF2	Q12495	606 aa		4.09	□□□□□ -1.75
VPS41	YDR080W	LEU1	P07264	779 aa	Known RBP	4.08	□□□□□ -1.76
VPS41	YDR080W	KTR2	P33550	425 aa		4.08	□□□□□ -1.76
VPS41	YDR080W	AHP1	P38013	176 aa	Known RBP	4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 49.9 ms