RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C PRK1P40494 810 aa3.41□□□□□ -1.86
VPS54YDR027C NAB2P32505 525 aaKnown RBP RIP-Chip data3.41□□□□□ -1.86not detected
VPS54YDR027C NGR1P32831 672 aaKnown RBP3.41□□□□□ -1.86
VPS54YDR027C SKP1P52286 194 aa3.41□□□□□ -1.86
VPS54YDR027C CUS1Q02554 436 aaPredicted RBP3.41□□□□□ -1.86
VPS54YDR027C GAL2P13181 574 aa3.4□□□□□ -1.86
VPS54YDR027C YPL034WQ03083 165 aa3.4□□□□□ -1.86
VPS54YDR027C VAN1P23642 535 aa3.4□□□□□ -1.87
VPS54YDR027C HXT5P38695 592 aa3.4□□□□□ -1.87
VPS54YDR027C CWH41P53008 833 aa3.4□□□□□ -1.87
VPS54YDR027C APM2P38700 605 aa3.39□□□□□ -1.87
VPS54YDR027C MAC1P35192 417 aa3.39□□□□□ -1.87
VPS54YDR027C ROM1P53046 1155 aa3.39□□□□□ -1.87
VPS54YDR027C BUD9P53226 547 aa3.38□□□□□ -1.87
VPS54YDR027C GIS4Q04233 774 aa3.38□□□□□ -1.87
VPS54YDR027C TRS33Q99394 268 aa3.38□□□□□ -1.87
VPS54YDR027C NAR1P23503 491 aaKnown RBP3.38□□□□□ -1.87
VPS54YDR027C QDR2P40474 542 aa3.37□□□□□ -1.87
VPS54YDR027C RPC31P17890 251 aa3.37□□□□□ -1.87
VPS54YDR027C YNR040WP53736 256 aa3.37□□□□□ -1.87
VPS54YDR027C TGL4P36165 910 aa3.37□□□□□ -1.87
VPS54YDR027C RRM3P38766 723 aa3.36□□□□□ -1.87
VPS54YDR027C ECM23Q02710 187 aa3.36□□□□□ -1.87
VPS54YDR027C AI3P03877 415 aa3.36□□□□□ -1.87
VPS54YDR027C LEO1P38439 464 aa3.35□□□□□ -1.87
VPS54YDR027C ALO1P54783 526 aaKnown RBP3.35□□□□□ -1.87
VPS54YDR027C SAC7P17121 654 aa3.35□□□□□ -1.87
VPS54YDR027C TTI1P36097 1038 aa3.35□□□□□ -1.87
VPS54YDR027C FOX2Q02207 900 aaKnown RBP3.35□□□□□ -1.87
VPS54YDR027C IDI1P15496 288 aa3.34□□□□□ -1.87
VPS54YDR027C OMA1P36163 345 aa3.34□□□□□ -1.87
VPS54YDR027C UBX7P38349 436 aa3.34□□□□□ -1.87
VPS54YDR027C DYS1P38791 387 aa3.34□□□□□ -1.87
VPS54YDR027C GAS5Q08193 484 aa3.34□□□□□ -1.87
VPS54YDR027C VMA3P25515 160 aa3.34□□□□□ -1.88
VPS54YDR027C SFA1P32771 386 aa3.34□□□□□ -1.88
VPS54YDR027C CAB1Q04430 367 aa3.34□□□□□ -1.88
VPS54YDR027C YOR296WQ08748 1289 aa3.34□□□□□ -1.88
VPS54YDR027C MRPL33P20084 86 aa3.33□□□□□ -1.88
VPS54YDR027C COQ2P32378 372 aa3.33□□□□□ -1.88
VPS54YDR027C ITC1P53125 1264 aa3.33□□□□□ -1.88
VPS54YDR027C SLP1Q12232 587 aa3.33□□□□□ -1.88
VPS54YDR027C SUV3P32580 737 aa3.33□□□□□ -1.88
VPS54YDR027C LDH1P38139 375 aa3.33□□□□□ -1.88
VPS54YDR027C YER156CP40093 338 aaKnown RBP3.33□□□□□ -1.88
VPS54YDR027C ARI1P53111 347 aaKnown RBP3.33□□□□□ -1.88
VPS54YDR027C MRP10O75012 95 aa3.32□□□□□ -1.88
VPS54YDR027C RSC2Q06488 889 aa3.32□□□□□ -1.88
VPS54YDR027C RSC6P25632 483 aa3.32□□□□□ -1.88
VPS54YDR027C GIP1P38229 639 aa3.32□□□□□ -1.88
VPS54YDR027C CPS1P27614 576 aa3.31□□□□□ -1.88
VPS54YDR027C YBR197CP38306 217 aa3.31□□□□□ -1.88
VPS54YDR027C BSD2P38356 321 aa3.31□□□□□ -1.88
VPS54YDR027C PGM1P33401 570 aaKnown RBP3.3□□□□□ -1.88
VPS54YDR027C ISW1P38144 1129 aa3.3□□□□□ -1.88
VPS54YDR027C TED1P40533 473 aa3.3□□□□□ -1.88
VPS54YDR027C INP52P50942 1183 aa3.3□□□□□ -1.88
VPS54YDR027C TY4B-PA0A0B7P3V8 1104 aa3.3□□□□□ -1.88
VPS54YDR027C ISC10P32645 267 aa3.3□□□□□ -1.88
VPS54YDR027C KAE1P36132 386 aa3.3□□□□□ -1.88
VPS54YDR027C GIP2P40036 548 aa3.3□□□□□ -1.88
VPS54YDR027C ALD4P46367 519 aaKnown RBP3.3□□□□□ -1.88
VPS54YDR027C SOK2P53438 785 aaPredicted RBP3.3□□□□□ -1.88
VPS54YDR027C DMA2P53924 522 aa3.3□□□□□ -1.88
VPS54YDR027C PUN1Q06991 263 aa3.3□□□□□ -1.88
VPS54YDR027C TY4A-HQ6Q5P6 413 aa3.3□□□□□ -1.88
VPS54YDR027C YJL181WP46987 611 aa3.29□□□□□ -1.88
VPS54YDR027C PUF6Q04373 656 aaKnown RBP3.29□□□□□ -1.88
VPS54YDR027C YBR287WP38355 427 aa3.29□□□□□ -1.88
VPS54YDR027C PPT1P53043 513 aa3.29□□□□□ -1.88
VPS54YDR027C MED7Q08278 222 aa3.29□□□□□ -1.88
VPS54YDR027C GLT1Q12680 2145 aaKnown RBP3.29□□□□□ -1.88
VPS54YDR027C DSE4P53753 1117 aa3.28□□□□□ -1.88
VPS54YDR027C PUP1P25043 261 aa3.27□□□□□ -1.89
VPS54YDR027C YIL165CP40446 119 aa3.27□□□□□ -1.89
VPS54YDR027C YLR122CQ12312 125 aa3.27□□□□□ -1.89
VPS54YDR027C MSN1P22148 382 aa3.27□□□□□ -1.89
VPS54YDR027C FIR1P40020 876 aa3.27□□□□□ -1.89
VPS54YDR027C IRC24P40580 263 aa3.27□□□□□ -1.89
VPS54YDR027C TY1A-NL1Q12391 440 aaKnown RBP3.27□□□□□ -1.89
VPS54YDR027C SRS2P12954 1174 aa3.26□□□□□ -1.89
VPS54YDR027C LIP5P32875 414 aa3.26□□□□□ -1.89
VPS54YDR027C SAF1P38352 637 aa3.26□□□□□ -1.89
VPS54YDR027C AKR1P39010 764 aa3.26□□□□□ -1.89
VPS54YDR027C TRP3P00937 484 aa3.26□□□□□ -1.89
VPS54YDR027C CHS2P14180 963 aa3.26□□□□□ -1.89
VPS54YDR027C YKR073CP36153 106 aa3.26□□□□□ -1.89
VPS54YDR027C TOS1P38288 455 aa3.26□□□□□ -1.89
VPS54YDR027C INP51P40559 946 aaKnown RBP3.25□□□□□ -1.89
VPS54YDR027C AIM46P38885 310 aa3.25□□□□□ -1.89
VPS54YDR027C HXT8P40886 569 aa3.25□□□□□ -1.89
VPS54YDR027C LEM3P42838 414 aa3.25□□□□□ -1.89
VPS54YDR027C GUP1P53154 560 aa3.25□□□□□ -1.89
VPS54YDR027C RRN6P32786 894 aa3.24□□□□□ -1.89
VPS54YDR027C PAN5P38787 379 aa3.24□□□□□ -1.89
VPS54YDR027C YGR130CP53278 816 aa3.24□□□□□ -1.89
VPS54YDR027C SSA4P22202 642 aaKnown RBP3.24□□□□□ -1.89
VPS54YDR027C AVT1P47082 602 aa3.24□□□□□ -1.89
VPS54YDR027C EMG1Q06287 252 aaKnown RBP3.24□□□□□ -1.89
VPS54YDR027C PUF3Q07807 879 aaKnown RBP RIP-Chip data3.24□□□□□ -1.89not detected
Retrieved 100 of 5,963 RNA–protein pairs in 44.6 ms