RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	HAL5	P38970	855 aa	Known RBP	3.39	□□□□□ -1.87
CLN3	YAL040C	PKC1	P24583	1151 aa		3.39	□□□□□ -1.87
CLN3	YAL040C	SLA1	P32790	1244 aa		3.39	□□□□□ -1.87
CLN3	YAL040C	UTP7	P40055	554 aa	Known RBP	3.39	□□□□□ -1.87
CLN3	YAL040C	ALA1	P40825	983 aa	Known RBP	3.39	□□□□□ -1.87
CLN3	YAL040C	SUM1	P46676	1062 aa		3.39	□□□□□ -1.87
CLN3	YAL040C	NSG2	P53898	299 aa		3.39	□□□□□ -1.87
CLN3	YAL040C	IRC20	Q06554	1556 aa		3.38	□□□□□ -1.87
CLN3	YAL040C	SNT2	P53127	1403 aa		3.38	□□□□□ -1.87
CLN3	YAL040C	SUP45	P12385	437 aa	Known RBP	3.38	□□□□□ -1.87
CLN3	YAL040C	SLX8	P40072	274 aa		3.38	□□□□□ -1.87
CLN3	YAL040C	ADE12	P80210	433 aa	Known RBP	3.38	□□□□□ -1.87
CLN3	YAL040C	YDR461C-A	Q2V2P7	80 aa		3.38	□□□□□ -1.87
CLN3	YAL040C	GEA1	P47102	1408 aa	Predicted RBP	3.37	□□□□□ -1.87
CLN3	YAL040C	ENO2	P00925	437 aa	Known RBP	3.37	□□□□□ -1.87
CLN3	YAL040C	KRE33	P53914	1056 aa	Known RBP	3.37	□□□□□ -1.87
CLN3	YAL040C	YNL108C	P53929	270 aa		3.37	□□□□□ -1.87
CLN3	YAL040C	HDA3	Q06623	655 aa		3.37	□□□□□ -1.87
CLN3	YAL040C	SYT1	Q06836	1226 aa		3.37	□□□□□ -1.87
CLN3	YAL040C	TY1A-DR3	Q12441	440 aa		3.37	□□□□□ -1.87
CLN3	YAL040C	SPO14	P36126	1683 aa		3.37	□□□□□ -1.87
CLN3	YAL040C	LSB3	P43603	459 aa	Known RBP	3.36	□□□□□ -1.87
CLN3	YAL040C	HGH1	P48362	394 aa	Known RBP	3.36	□□□□□ -1.87
CLN3	YAL040C	THI72	Q08579	599 aa		3.36	□□□□□ -1.87
CLN3	YAL040C	NUP159	P40477	1460 aa		3.36	□□□□□ -1.87
CLN3	YAL040C	MDJ1	P35191	511 aa		3.36	□□□□□ -1.87
CLN3	YAL040C	JJJ2	P46997	583 aa		3.36	□□□□□ -1.87
CLN3	YAL040C	NUP170	P38181	1502 aa		3.36	□□□□□ -1.87
CLN3	YAL040C	IRE1	P32361	1115 aa		3.35	□□□□□ -1.87
CLN3	YAL040C	YFL034W	P43564	1073 aa		3.35	□□□□□ -1.87
CLN3	YAL040C	RIM21	P48565	533 aa		3.35	□□□□□ -1.87
CLN3	YAL040C	GEA2	P39993	1459 aa	Known RBP	3.35	□□□□□ -1.87
CLN3	YAL040C	YFL066C	P43538	392 aa		3.34	□□□□□ -1.87
CLN3	YAL040C	YJL007C	P47080	104 aa		3.34	□□□□□ -1.87
CLN3	YAL040C	FPS1	P23900	669 aa		3.33	□□□□□ -1.88
CLN3	YAL040C	AIM9	P40053	627 aa	Known RBP	3.33	□□□□□ -1.88
CLN3	YAL040C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	3.33	□□□□□ -1.88	not detected
CLN3	YAL040C	YPR053C	Q6Q5F3	151 aa		3.33	□□□□□ -1.88
CLN3	YAL040C	ARO1	P08566	1588 aa	Known RBP	3.33	□□□□□ -1.88
CLN3	YAL040C	GDB1	Q06625	1536 aa		3.33	□□□□□ -1.88
CLN3	YAL040C	BUD3	P25558	1636 aa		3.33	□□□□□ -1.88
CLN3	YAL040C	MET5	P47169	1442 aa		3.33	□□□□□ -1.88
CLN3	YAL040C	SWI5	P08153	709 aa		3.33	□□□□□ -1.88
CLN3	YAL040C	SHM1	P37292	490 aa	Predicted RBP	3.33	□□□□□ -1.88
CLN3	YAL040C	VPS15	P22219	1454 aa		3.32	□□□□□ -1.88
CLN3	YAL040C	PDR10	P51533	1564 aa		3.32	□□□□□ -1.88
CLN3	YAL040C	PDC6	P26263	563 aa	Known RBP	3.32	□□□□□ -1.88
CLN3	YAL040C	RPL34B	P40525	121 aa	Known RBP	3.32	□□□□□ -1.88
CLN3	YAL040C	YPQ2	Q06328	317 aa		3.32	□□□□□ -1.88
CLN3	YAL040C	PSH1	Q12161	406 aa		3.32	□□□□□ -1.88
CLN3	YAL040C	SSM4	P40318	1319 aa		3.31	□□□□□ -1.88
CLN3	YAL040C	PDR12	Q02785	1511 aa		3.31	□□□□□ -1.88
CLN3	YAL040C	RPP1A	P05318	106 aa	Predicted RBP	3.31	□□□□□ -1.88
CLN3	YAL040C	RPS6A	P0CX37	236 aa	Known RBP	3.31	□□□□□ -1.88
CLN3	YAL040C	RPS6B	P0CX38	236 aa	Predicted RBP	3.31	□□□□□ -1.88
CLN3	YAL040C	MCM1	P11746	286 aa		3.31	□□□□□ -1.88
CLN3	YAL040C	RDS2	P19541	446 aa	Known RBP	3.31	□□□□□ -1.88
CLN3	YAL040C	MRPL16	P38064	232 aa		3.31	□□□□□ -1.88
CLN3	YAL040C	YTA6	P40328	754 aa		3.31	□□□□□ -1.88
CLN3	YAL040C	DMA2	P53924	522 aa		3.31	□□□□□ -1.88
CLN3	YAL040C	STB3	Q12427	513 aa		3.31	□□□□□ -1.88
CLN3	YAL040C	GPM1	P00950	247 aa	Known RBP	3.3	□□□□□ -1.88
CLN3	YAL040C	SBE2	P42223	864 aa	Known RBP	3.3	□□□□□ -1.88
CLN3	YAL040C	CCT8	P47079	568 aa	Known RBP	3.3	□□□□□ -1.88
CLN3	YAL040C	YNR014W	P53719	212 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	MRX10	Q05648	414 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	TDA6	Q06466	467 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	RLF2	Q12495	606 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	IKI3	Q06706	1349 aa	Known RBP	3.3	□□□□□ -1.88
CLN3	YAL040C	DOP1	Q03921	1698 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	ENO1	P00924	437 aa	Known RBP	3.3	□□□□□ -1.88
CLN3	YAL040C	NTH2	P35172	780 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	MET1	P36150	593 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	BIM1	P40013	344 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	YMR187C	Q03236	431 aa		3.3	□□□□□ -1.88
CLN3	YAL040C	LEU1	P07264	779 aa	Known RBP	3.29	□□□□□ -1.88
CLN3	YAL040C	MCX1	P38323	520 aa	Predicted RBP	3.29	□□□□□ -1.88
CLN3	YAL040C	ATG32	P40458	529 aa		3.29	□□□□□ -1.88
CLN3	YAL040C	NUP157	P40064	1391 aa	Known RBP	3.28	□□□□□ -1.88
CLN3	YAL040C	RPS31	P05759	152 aa	Known RBP	3.28	□□□□□ -1.88
CLN3	YAL040C	TIF1	P10081	395 aa	Known RBP	3.28	□□□□□ -1.88
CLN3	YAL040C	KNS1	P32350	737 aa	Predicted RBP	3.28	□□□□□ -1.88
CLN3	YAL040C	RTG2	P32608	588 aa	Known RBP	3.28	□□□□□ -1.88
CLN3	YAL040C	TSC13	Q99190	310 aa		3.28	□□□□□ -1.88
CLN3	YAL040C	CHC1	P22137	1653 aa	Known RBP	3.27	□□□□□ -1.89
CLN3	YAL040C	CYT1	P07143	309 aa		3.27	□□□□□ -1.89
CLN3	YAL040C	PDI1	P17967	522 aa	Known RBP	3.27	□□□□□ -1.89
CLN3	YAL040C	BOI2	P39969	1040 aa		3.27	□□□□□ -1.89
CLN3	YAL040C	SPR3	P41901	512 aa		3.27	□□□□□ -1.89
CLN3	YAL040C	CAT8	P39113	1433 aa		3.27	□□□□□ -1.89
CLN3	YAL040C	BNI1	P41832	1953 aa		3.27	□□□□□ -1.89
CLN3	YAL040C	PDC5	P16467	563 aa	Known RBP	3.27	□□□□□ -1.89
CLN3	YAL040C	RGP1	P16664	663 aa		3.27	□□□□□ -1.89
CLN3	YAL040C	SKN7	P38889	622 aa		3.27	□□□□□ -1.89
CLN3	YAL040C	TY1A-DR2	Q03964	440 aa	Known RBP	3.27	□□□□□ -1.89
CLN3	YAL040C	PEP12	P32854	288 aa		3.26	□□□□□ -1.89
CLN3	YAL040C	SIS2	P36024	562 aa		3.26	□□□□□ -1.89
CLN3	YAL040C	ALD2	P47771	506 aa		3.26	□□□□□ -1.89
CLN3	YAL040C	SBP1	P10080	294 aa	Known RBP	3.25	□□□□□ -1.89
CLN3	YAL040C	PHO87	P25360	923 aa		3.25	□□□□□ -1.89

Retrieved 100 of 5,963 RNA–protein pairs in 66.2 ms