RNA–Protein interactions for RNA: ENST00000641371.1

PHGDH-215, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 725 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-215ENST00000641371 TULP4Q9NRJ4 1543 aa13.18□□□□□ -0.3
PHGDH-215ENST00000641371 TXNDC2Q86VQ3 553 aa13.17□□□□□ -0.3
PHGDH-215ENST00000641371 NSD2O96028 1365 aa13.17□□□□□ -0.3
PHGDH-215ENST00000641371 MED14O60244 1454 aa13.16□□□□□ -0.3
PHGDH-215ENST00000641371 ADAMTS13Q76LX8 1427 aa13.16□□□□□ -0.3
PHGDH-215ENST00000641371 CEBPAP49715 358 aaPredicted RBP13.16□□□□□ -0.3
PHGDH-215ENST00000641371 TMC1Q8TDI8 760 aa13.16□□□□□ -0.3
PHGDH-215ENST00000641371 PRAM1Q96QH2 718 aa13.16□□□□□ -0.3
PHGDH-215ENST00000641371 TBX22Q9Y458 520 aa13.16□□□□□ -0.3
PHGDH-215ENST00000641371 ANKRD36BQ8N2N9 1353 aa13.16□□□□□ -0.3
PHGDH-215ENST00000641371 BCANQ96GW7 911 aa13.15□□□□□ -0.3
PHGDH-215ENST00000641371 STK26Q9P289 416 aa13.15□□□□□ -0.3
PHGDH-215ENST00000641371 AMER1Q5JTC6 1135 aaPredicted RBP13.14□□□□□ -0.31
PHGDH-215ENST00000641371 PTCH1Q13635 1447 aa13.13□□□□□ -0.31
PHGDH-215ENST00000641371 ADGRB2O60241 1585 aa13.13□□□□□ -0.31
PHGDH-215ENST00000641371 METP08581 1390 aa13.12□□□□□ -0.31
PHGDH-215ENST00000641371 TERF2IPQ9NYB0 399 aa13.12□□□□□ -0.31
PHGDH-215ENST00000641371 CGNL1Q0VF96 1302 aa13.12□□□□□ -0.31
PHGDH-215ENST00000641371 ATP7BP35670 1465 aa13.11□□□□□ -0.31
PHGDH-215ENST00000641371 LTKP29376 864 aa13.11□□□□□ -0.31
PHGDH-215ENST00000641371 SRPK2P78362 688 aaKnown RBP13.11□□□□□ -0.31
PHGDH-215ENST00000641371 ANKLE2Q86XL3 938 aa13.11□□□□□ -0.31
PHGDH-215ENST00000641371 CC2D1BQ5T0F9 858 aaKnown RBP13.09□□□□□ -0.31
PHGDH-215ENST00000641371 HDGFL2Q7Z4V5 671 aaPredicted RBP13.09□□□□□ -0.31
PHGDH-215ENST00000641371 NSD3Q9BZ95 1437 aa13.09□□□□□ -0.31
PHGDH-215ENST00000641371 MINK1Q8N4C8 1332 aaPredicted RBP13.09□□□□□ -0.31
PHGDH-215ENST00000641371 HNRNPUQ00839 825 aaKnown RBP eCLIP13.08□□□□□ -0.32
PHGDH-215ENST00000641371 PNISRQ8TF01 805 aaKnown RBP13.08□□□□□ -0.32
PHGDH-215ENST00000641371 ZBED9Q6R2W3 1325 aa13.08□□□□□ -0.32
PHGDH-215ENST00000641371 XRN1Q8IZH2 1706 aaKnown RBP13.08□□□□□ -0.32
PHGDH-215ENST00000641371 WASLO00401 505 aaPredicted RBP13.07□□□□□ -0.32
PHGDH-215ENST00000641371 FAM9BQ8IZU0 186 aa13.07□□□□□ -0.32
PHGDH-215ENST00000641371 CDK19Q9BWU1 502 aa13.07□□□□□ -0.32
PHGDH-215ENST00000641371 ANKRD26Q9UPS8 1709 aa13.07□□□□□ -0.32
PHGDH-215ENST00000641371 SLC12A5Q9H2X9 1139 aa13.06□□□□□ -0.32
PHGDH-215ENST00000641371 CABP2Q9NPB3 220 aa13.06□□□□□ -0.32
PHGDH-215ENST00000641371 SAFB2Q14151 953 aaKnown RBP eCLIP13.05□□□□□ -0.32
PHGDH-215ENST00000641371 ITSN1Q15811 1721 aa13.05□□□□□ -0.32
PHGDH-215ENST00000641371 PPP2R1AP30153 589 aa13.04□□□□□ -0.32
PHGDH-215ENST00000641371 CCDC184Q52MB2 194 aa13.04□□□□□ -0.32
PHGDH-215ENST00000641371 PLPPR3Q6T4P5 718 aa13.04□□□□□ -0.32
PHGDH-215ENST00000641371 CARD14Q9BXL6 1004 aa13.04□□□□□ -0.32
PHGDH-215ENST00000641371 CHD2O14647 1828 aaKnown RBP13.04□□□□□ -0.32
PHGDH-215ENST00000641371 WAPLQ7Z5K2 1190 aa13.03□□□□□ -0.32
PHGDH-215ENST00000641371 ZNF692Q9BU19 519 aaPredicted RBP13.03□□□□□ -0.32
PHGDH-215ENST00000641371 CCDC61Q9Y6R9 512 aa13.03□□□□□ -0.32
PHGDH-215ENST00000641371 A0A1W2PP64 1363 aa13.03□□□□□ -0.32
PHGDH-215ENST00000641371 ROBO2Q9HCK4 1378 aa13.03□□□□□ -0.32
PHGDH-215ENST00000641371 PLEKHH1Q9ULM0 1364 aa13.03□□□□□ -0.32
PHGDH-215ENST00000641371 CDC42BPGQ6DT37 1551 aa13.03□□□□□ -0.32
PHGDH-215ENST00000641371 KIF20BQ96Q89 1820 aa13.02□□□□□ -0.32
PHGDH-215ENST00000641371 MORC1Q86VD1 984 aa13.02□□□□□ -0.33
PHGDH-215ENST00000641371 NGEFQ8N5V2 710 aa13.02□□□□□ -0.33
PHGDH-215ENST00000641371 AMOTL2Q9Y2J4 779 aa13.02□□□□□ -0.33
PHGDH-215ENST00000641371 POLR3AO14802 1390 aaPredicted RBP13.02□□□□□ -0.33
PHGDH-215ENST00000641371 EDC4Q6P2E9 1401 aaKnown RBP13.02□□□□□ -0.33
PHGDH-215ENST00000641371 PTPRUQ92729 1446 aa13.02□□□□□ -0.33
PHGDH-215ENST00000641371 CNGB1Q14028 1251 aaPredicted RBP13.01□□□□□ -0.33
PHGDH-215ENST00000641371 WDR43Q15061 677 aaKnown RBP eCLIP13.01□□□□□ -0.33
PHGDH-215ENST00000641371 SLC26A8Q96RN1 970 aa13.01□□□□□ -0.33
PHGDH-215ENST00000641371 NPHP4O75161 1426 aaPredicted RBP13.01□□□□□ -0.33
PHGDH-215ENST00000641371 ANKARQ7Z5J8 1434 aa13.01□□□□□ -0.33
PHGDH-215ENST00000641371 TOPAZ1Q8N9V7 1692 aa13.01□□□□□ -0.33
PHGDH-215ENST00000641371 AKAP12Q02952 1782 aa13.01□□□□□ -0.33
PHGDH-215ENST00000641371 MON2Q7Z3U7 1717 aa13□□□□□ -0.33
PHGDH-215ENST00000641371 SIPA1L2Q9P2F8 1722 aaPredicted RBP13□□□□□ -0.33
PHGDH-215ENST00000641371 CD163L1Q9NR16 1453 aa13□□□□□ -0.33
PHGDH-215ENST00000641371 BLMP54132 1417 aaPredicted RBP13□□□□□ -0.33
PHGDH-215ENST00000641371 CPSF1Q10570 1443 aaKnown RBP13□□□□□ -0.33
PHGDH-215ENST00000641371 PPIP5K1Q6PFW1 1433 aa13□□□□□ -0.33
PHGDH-215ENST00000641371 CFAP53Q96M91 514 aa13□□□□□ -0.33
PHGDH-215ENST00000641371 NUDT16Q96DE0 195 aaKnown RBP12.99□□□□□ -0.33
PHGDH-215ENST00000641371 SCAF1Q9H7N4 1312 aaKnown RBP12.98□□□□□ -0.33
PHGDH-215ENST00000641371 PDE3BQ13370 1112 aa12.98□□□□□ -0.33
PHGDH-215ENST00000641371 SENP3Q9H4L4 574 aaPredicted RBP12.98□□□□□ -0.33
PHGDH-215ENST00000641371 CABP1Q9NZU7 370 aa12.98□□□□□ -0.33
PHGDH-215ENST00000641371 NWD1Q149M9 1564 aa12.98□□□□□ -0.33
PHGDH-215ENST00000641371 PLEKHG3A1L390 1219 aa12.97□□□□□ -0.33
PHGDH-215ENST00000641371 GTF3C3Q9Y5Q9 886 aa12.95□□□□□ -0.34
PHGDH-215ENST00000641371 NKTRP30414 1462 aaKnown RBP12.95□□□□□ -0.34
PHGDH-215ENST00000641371 FMN2Q9NZ56 1722 aa12.94□□□□□ -0.34
PHGDH-215ENST00000641371 KCNA6P17658 529 aa12.94□□□□□ -0.34
PHGDH-215ENST00000641371 NEFLP07196 543 aa12.93□□□□□ -0.34
PHGDH-215ENST00000641371 NCBP3Q53F19 620 aaKnown RBP12.93□□□□□ -0.34
PHGDH-215ENST00000641371 SMG6Q86US8 1419 aaKnown RBP12.93□□□□□ -0.34
PHGDH-215ENST00000641371 NCOA3Q9Y6Q9 1424 aa12.93□□□□□ -0.34
PHGDH-215ENST00000641371 TTC21AQ8NDW8 1320 aa12.92□□□□□ -0.34
PHGDH-215ENST00000641371 FYB1O15117 783 aa12.92□□□□□ -0.34
PHGDH-215ENST00000641371 ADGRL3Q9HAR2 1447 aa12.92□□□□□ -0.34
PHGDH-215ENST00000641371 NUDCQ9Y266 331 aa12.92□□□□□ -0.34
PHGDH-215ENST00000641371 AATKQ6ZMQ8 1374 aa12.92□□□□□ -0.34
PHGDH-215ENST00000641371 NRKQ7Z2Y5 1582 aa12.91□□□□□ -0.34
PHGDH-215ENST00000641371 PNNQ9H307 717 aaKnown RBP12.91□□□□□ -0.34
PHGDH-215ENST00000641371 USP6P35125 1406 aa12.9□□□□□ -0.34
PHGDH-215ENST00000641371 LRRC7Q96NW7 1537 aa12.9□□□□□ -0.34
PHGDH-215ENST00000641371 PRR36Q9H6K5 1346 aa12.89□□□□□ -0.35
PHGDH-215ENST00000641371 NALCNQ8IZF0 1738 aa12.89□□□□□ -0.35
PHGDH-215ENST00000641371 MTHFSP49914 203 aa12.89□□□□□ -0.35
PHGDH-215ENST00000641371 ERICH6BQ5W0A0 696 aa12.89□□□□□ -0.35
PHGDH-215ENST00000641371 COG3Q96JB2 828 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms