RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 LRRC59Q96AG4 307 aaKnown RBP36.9■■■■□ 3.5
VEGFA-232ENST00000640653 DHX57Q6P158 1386 aaKnown RBP36.9■■■■□ 3.5
VEGFA-232ENST00000640653 DDX17Q92841 729 aaKnown RBP36.87■■■■□ 3.49
VEGFA-232ENST00000640653 SIRT1Q96EB6 747 aa36.87■■■■□ 3.49
VEGFA-232ENST00000640653 ORAI2Q96SN7 254 aa36.87■■■■□ 3.49
VEGFA-232ENST00000640653 LRP6O75581 1613 aa36.85■■■■□ 3.49
VEGFA-232ENST00000640653 MEX3CQ5U5Q3 659 aaKnown RBP36.85■■■■□ 3.49
VEGFA-232ENST00000640653 STAC3Q96MF2 364 aa36.85■■■■□ 3.49
VEGFA-232ENST00000640653 PLEKHH1Q9ULM0 1364 aa36.85■■■■□ 3.49
VEGFA-232ENST00000640653 DCAF11Q8TEB1 546 aa36.84■■■■□ 3.49
VEGFA-232ENST00000640653 KDM2AQ9Y2K7 1162 aa36.82■■■■□ 3.48
VEGFA-232ENST00000640653 POTEAQ6S8J7 498 aa36.79■■■■□ 3.48
VEGFA-232ENST00000640653 ESCO1Q5FWF5 840 aa36.78■■■■□ 3.48
VEGFA-232ENST00000640653 NUTM2BA6NNL0 878 aaPredicted RBP36.77■■■■□ 3.48
VEGFA-232ENST00000640653 NUTM2EB1AL46 878 aaPredicted RBP36.77■■■■□ 3.48
VEGFA-232ENST00000640653 NUTM2AQ8IVF1 878 aaPredicted RBP36.77■■■■□ 3.48
VEGFA-232ENST00000640653 SOS2Q07890 1332 aaPredicted RBP36.76■■■■□ 3.47
VEGFA-232ENST00000640653 PNPLA6Q8IY17 1366 aa36.76■■■■□ 3.47
VEGFA-232ENST00000640653 DLC1Q96QB1 1528 aa36.73■■■■□ 3.47
VEGFA-232ENST00000640653 NUTM2FA1L443 756 aa36.72■■■■□ 3.47
VEGFA-232ENST00000640653 ADGRB1O14514 1584 aa36.72■■■■□ 3.47
VEGFA-232ENST00000640653 NPHP3Q7Z494 1330 aa36.72■■■■□ 3.47
VEGFA-232ENST00000640653 PRAM1Q96QH2 718 aa36.72■■■■□ 3.47
VEGFA-232ENST00000640653 FMN2Q9NZ56 1722 aa36.7■■■■□ 3.47
VEGFA-232ENST00000640653 ZNF772Q68DY9 489 aaPredicted RBP36.69■■■■□ 3.46
VEGFA-232ENST00000640653 POGKQ9P215 609 aa36.69■■■■□ 3.46
VEGFA-232ENST00000640653 SAFB2Q14151 953 aaKnown RBP eCLIP36.66■■■■□ 3.46
VEGFA-232ENST00000640653 TRAK1Q9UPV9 953 aa36.65■■■■□ 3.46
VEGFA-232ENST00000640653 FOXO3O43524 673 aa36.63■■■■□ 3.45
VEGFA-232ENST00000640653 PXDNQ92626 1479 aa36.61■■■■□ 3.45
VEGFA-232ENST00000640653 KIF1AQ12756 1690 aa36.59■■■■□ 3.45
VEGFA-232ENST00000640653 C8orf37Q96NL8 207 aa36.57■■■■□ 3.44
VEGFA-232ENST00000640653 AFF2P51816 1311 aa36.57■■■■□ 3.44
VEGFA-232ENST00000640653 XPCQ01831 940 aaPredicted RBP36.56■■■■□ 3.44
VEGFA-232ENST00000640653 ADGRB2O60241 1585 aa36.55■■■■□ 3.44
VEGFA-232ENST00000640653 COL22A1Q8NFW1 1626 aaPredicted RBP36.54■■■■□ 3.44
VEGFA-232ENST00000640653 ADAMTS2O95450 1211 aa36.52■■■■□ 3.44
VEGFA-232ENST00000640653 PHF8Q9UPP1 1060 aa36.52■■■■□ 3.44
VEGFA-232ENST00000640653 ANKARQ7Z5J8 1434 aa36.51■■■■□ 3.43
VEGFA-232ENST00000640653 HIRIP3Q9BW71 556 aaPredicted RBP36.49■■■■□ 3.43
VEGFA-232ENST00000640653 MINK1Q8N4C8 1332 aaPredicted RBP36.49■■■■□ 3.43
VEGFA-232ENST00000640653 EIF3AQ14152 1382 aaKnown RBP36.48■■■■□ 3.43
VEGFA-232ENST00000640653 KRT28Q7Z3Y7 464 aa36.47■■■■□ 3.43
VEGFA-232ENST00000640653 NGLY1Q96IV0 654 aa36.47■■■■□ 3.43
VEGFA-232ENST00000640653 KIAA1210Q9ULL0 1709 aa36.47■■■■□ 3.43
VEGFA-232ENST00000640653 RGPD8O14715 1765 aaPredicted RBP36.47■■■■□ 3.43
VEGFA-232ENST00000640653 RXRBP28702 533 aa36.46■■■■□ 3.43
VEGFA-232ENST00000640653 SPATA31A3Q5VYP0 1347 aa36.44■■■■□ 3.42
VEGFA-232ENST00000640653 PSME1Q06323 249 aa36.44■■■■□ 3.42
VEGFA-232ENST00000640653 ARHGEF28Q8N1W1 1705 aaKnown RBP36.44■■■■□ 3.42
VEGFA-232ENST00000640653 USP32Q8NFA0 1604 aa36.42■■■■□ 3.42
VEGFA-232ENST00000640653 WASLO00401 505 aaPredicted RBP36.42■■■■□ 3.42
VEGFA-232ENST00000640653 TULP4Q9NRJ4 1543 aa36.4■■■■□ 3.42
VEGFA-232ENST00000640653 QTRT2Q9H974 415 aaKnown RBP36.39■■■■□ 3.42
VEGFA-232ENST00000640653 PMFBP1Q8TBY8 1022 aa36.38■■■■□ 3.41
VEGFA-232ENST00000640653 TNS3Q68CZ2 1445 aa36.37■■■■□ 3.41
VEGFA-232ENST00000640653 L3MBTL2Q969R5 705 aa36.36■■■■□ 3.41
VEGFA-232ENST00000640653 SIN3AQ96ST3 1273 aa36.36■■■■□ 3.41
VEGFA-232ENST00000640653 SBNO1A3KN83 1393 aa36.36■■■■□ 3.41
VEGFA-232ENST00000640653 CDK12Q9NYV4 1490 aaPredicted RBP36.36■■■■□ 3.41
VEGFA-232ENST00000640653 NBPF1Q3BBV0 1214 aa36.35■■■■□ 3.41
VEGFA-232ENST00000640653 FNBP4Q8N3X1 1017 aaPredicted RBP36.34■■■■□ 3.41
VEGFA-232ENST00000640653 USP21Q9UK80 565 aa36.34■■■■□ 3.41
VEGFA-232ENST00000640653 PRR36Q9H6K5 1346 aa36.34■■■■□ 3.41
VEGFA-232ENST00000640653 RBM6P78332 1123 aaKnown RBP36.32■■■■□ 3.4
VEGFA-232ENST00000640653 NEUROD1Q13562 356 aa36.32■■■■□ 3.4
VEGFA-232ENST00000640653 ARHGEF10O15013 1369 aa36.29■■■■□ 3.4
VEGFA-232ENST00000640653 GPRASP1Q5JY77 1395 aa36.28■■■■□ 3.4
VEGFA-232ENST00000640653 MARF1Q9Y4F3 1742 aaKnown RBP36.28■■■■□ 3.4
VEGFA-232ENST00000640653 TRPC5Q9UL62 973 aaPredicted RBP36.28■■■■□ 3.4
VEGFA-232ENST00000640653 LMOD2Q6P5Q4 547 aa36.27■■■■□ 3.4
VEGFA-232ENST00000640653 HAP1P54257 671 aaPredicted RBP36.26■■■■□ 3.4
VEGFA-232ENST00000640653 TRIM26Q12899 539 aaPredicted RBP36.26■■■■□ 3.4
VEGFA-232ENST00000640653 ATP7BP35670 1465 aa36.24■■■■□ 3.39
VEGFA-232ENST00000640653 NGDNQ8NEJ9 315 aaKnown RBP36.24■■■■□ 3.39
VEGFA-232ENST00000640653 NUDT16Q96DE0 195 aaKnown RBP36.24■■■■□ 3.39
VEGFA-232ENST00000640653 CDK19Q9BWU1 502 aa36.24■■■■□ 3.39
VEGFA-232ENST00000640653 ITSN1Q15811 1721 aa36.22■■■■□ 3.39
VEGFA-232ENST00000640653 ATRNO75882 1429 aa36.21■■■■□ 3.39
VEGFA-232ENST00000640653 CENPJQ9HC77 1338 aaPredicted RBP36.21■■■■□ 3.39
VEGFA-232ENST00000640653 RGS12O14924 1447 aa36.2■■■■□ 3.39
VEGFA-232ENST00000640653 BCL9LQ86UU0 1499 aa36.19■■■■□ 3.38
VEGFA-232ENST00000640653 TRPM3Q9HCF6 1732 aaPredicted RBP36.19■■■■□ 3.38
VEGFA-232ENST00000640653 CABLES1Q8TDN4 633 aa36.18■■■■□ 3.38
VEGFA-232ENST00000640653 PLEKHG5O94827 1062 aa36.17■■■■□ 3.38
VEGFA-232ENST00000640653 TRPM1Q7Z4N2 1603 aa36.16■■■■□ 3.38
VEGFA-232ENST00000640653 CCDC61Q9Y6R9 512 aa36.14■■■■□ 3.38
VEGFA-232ENST00000640653 SLIT2O94813 1529 aa36.13■■■■□ 3.38
VEGFA-232ENST00000640653 ABCA3Q99758 1704 aa36.12■■■■□ 3.37
VEGFA-232ENST00000640653 UNC5CLQ8IV45 518 aa36.12■■■■□ 3.37
VEGFA-232ENST00000640653 ALS2Q96Q42 1657 aa36.12■■■■□ 3.37
VEGFA-232ENST00000640653 ROCK2O75116 1388 aaKnown RBP36.12■■■■□ 3.37
VEGFA-232ENST00000640653 PAK3O75914 559 aaPredicted RBP36.11■■■■□ 3.37
VEGFA-232ENST00000640653 SRPK2P78362 688 aaKnown RBP36.1■■■■□ 3.37
VEGFA-232ENST00000640653 UPF1Q92900 1129 aaKnown RBP eCLIP36.1■■■■□ 3.37
VEGFA-232ENST00000640653 TNKS1BP1Q9C0C2 1729 aaKnown RBP36.1■■■■□ 3.37
VEGFA-232ENST00000640653 TOPAZ1Q8N9V7 1692 aa36.1■■■■□ 3.37
VEGFA-232ENST00000640653 QRICH2Q9H0J4 1663 aa36.09■■■■□ 3.37
VEGFA-232ENST00000640653 POLR3AO14802 1390 aaPredicted RBP36.07■■■■□ 3.36
VEGFA-232ENST00000640653 PLEKHG3A1L390 1219 aa36.06■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms