RNA–Protein interactions for RNA: ENST00000640482.1

VEGFA-230, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,065 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-230ENST00000640482 LRRC59Q96AG4 307 aaKnown RBP36.9■■■■□ 3.5
VEGFA-230ENST00000640482 DHX57Q6P158 1386 aaKnown RBP36.9■■■■□ 3.5
VEGFA-230ENST00000640482 DDX17Q92841 729 aaKnown RBP36.87■■■■□ 3.49
VEGFA-230ENST00000640482 SIRT1Q96EB6 747 aa36.87■■■■□ 3.49
VEGFA-230ENST00000640482 ORAI2Q96SN7 254 aa36.87■■■■□ 3.49
VEGFA-230ENST00000640482 LRP6O75581 1613 aa36.85■■■■□ 3.49
VEGFA-230ENST00000640482 MEX3CQ5U5Q3 659 aaKnown RBP36.85■■■■□ 3.49
VEGFA-230ENST00000640482 STAC3Q96MF2 364 aa36.85■■■■□ 3.49
VEGFA-230ENST00000640482 PLEKHH1Q9ULM0 1364 aa36.85■■■■□ 3.49
VEGFA-230ENST00000640482 DCAF11Q8TEB1 546 aa36.84■■■■□ 3.49
VEGFA-230ENST00000640482 KDM2AQ9Y2K7 1162 aa36.82■■■■□ 3.48
VEGFA-230ENST00000640482 POTEAQ6S8J7 498 aa36.79■■■■□ 3.48
VEGFA-230ENST00000640482 ESCO1Q5FWF5 840 aa36.78■■■■□ 3.48
VEGFA-230ENST00000640482 NUTM2BA6NNL0 878 aaPredicted RBP36.77■■■■□ 3.48
VEGFA-230ENST00000640482 NUTM2EB1AL46 878 aaPredicted RBP36.77■■■■□ 3.48
VEGFA-230ENST00000640482 NUTM2AQ8IVF1 878 aaPredicted RBP36.77■■■■□ 3.48
VEGFA-230ENST00000640482 SOS2Q07890 1332 aaPredicted RBP36.76■■■■□ 3.47
VEGFA-230ENST00000640482 PNPLA6Q8IY17 1366 aa36.76■■■■□ 3.47
VEGFA-230ENST00000640482 DLC1Q96QB1 1528 aa36.73■■■■□ 3.47
VEGFA-230ENST00000640482 NUTM2FA1L443 756 aa36.72■■■■□ 3.47
VEGFA-230ENST00000640482 ADGRB1O14514 1584 aa36.72■■■■□ 3.47
VEGFA-230ENST00000640482 NPHP3Q7Z494 1330 aa36.72■■■■□ 3.47
VEGFA-230ENST00000640482 PRAM1Q96QH2 718 aa36.72■■■■□ 3.47
VEGFA-230ENST00000640482 FMN2Q9NZ56 1722 aa36.7■■■■□ 3.47
VEGFA-230ENST00000640482 ZNF772Q68DY9 489 aaPredicted RBP36.69■■■■□ 3.46
VEGFA-230ENST00000640482 POGKQ9P215 609 aa36.69■■■■□ 3.46
VEGFA-230ENST00000640482 SAFB2Q14151 953 aaKnown RBP eCLIP36.66■■■■□ 3.46
VEGFA-230ENST00000640482 TRAK1Q9UPV9 953 aa36.65■■■■□ 3.46
VEGFA-230ENST00000640482 FOXO3O43524 673 aa36.63■■■■□ 3.45
VEGFA-230ENST00000640482 PXDNQ92626 1479 aa36.61■■■■□ 3.45
VEGFA-230ENST00000640482 KIF1AQ12756 1690 aa36.59■■■■□ 3.45
VEGFA-230ENST00000640482 C8orf37Q96NL8 207 aa36.57■■■■□ 3.44
VEGFA-230ENST00000640482 AFF2P51816 1311 aa36.57■■■■□ 3.44
VEGFA-230ENST00000640482 XPCQ01831 940 aaPredicted RBP36.56■■■■□ 3.44
VEGFA-230ENST00000640482 ADGRB2O60241 1585 aa36.55■■■■□ 3.44
VEGFA-230ENST00000640482 COL22A1Q8NFW1 1626 aaPredicted RBP36.54■■■■□ 3.44
VEGFA-230ENST00000640482 ADAMTS2O95450 1211 aa36.52■■■■□ 3.44
VEGFA-230ENST00000640482 PHF8Q9UPP1 1060 aa36.52■■■■□ 3.44
VEGFA-230ENST00000640482 ANKARQ7Z5J8 1434 aa36.51■■■■□ 3.43
VEGFA-230ENST00000640482 HIRIP3Q9BW71 556 aaPredicted RBP36.49■■■■□ 3.43
VEGFA-230ENST00000640482 MINK1Q8N4C8 1332 aaPredicted RBP36.49■■■■□ 3.43
VEGFA-230ENST00000640482 EIF3AQ14152 1382 aaKnown RBP36.48■■■■□ 3.43
VEGFA-230ENST00000640482 KRT28Q7Z3Y7 464 aa36.47■■■■□ 3.43
VEGFA-230ENST00000640482 NGLY1Q96IV0 654 aa36.47■■■■□ 3.43
VEGFA-230ENST00000640482 KIAA1210Q9ULL0 1709 aa36.47■■■■□ 3.43
VEGFA-230ENST00000640482 RGPD8O14715 1765 aaPredicted RBP36.47■■■■□ 3.43
VEGFA-230ENST00000640482 RXRBP28702 533 aa36.46■■■■□ 3.43
VEGFA-230ENST00000640482 SPATA31A3Q5VYP0 1347 aa36.44■■■■□ 3.42
VEGFA-230ENST00000640482 PSME1Q06323 249 aa36.44■■■■□ 3.42
VEGFA-230ENST00000640482 ARHGEF28Q8N1W1 1705 aaKnown RBP36.44■■■■□ 3.42
VEGFA-230ENST00000640482 USP32Q8NFA0 1604 aa36.42■■■■□ 3.42
VEGFA-230ENST00000640482 WASLO00401 505 aaPredicted RBP36.42■■■■□ 3.42
VEGFA-230ENST00000640482 TULP4Q9NRJ4 1543 aa36.4■■■■□ 3.42
VEGFA-230ENST00000640482 QTRT2Q9H974 415 aaKnown RBP36.39■■■■□ 3.42
VEGFA-230ENST00000640482 PMFBP1Q8TBY8 1022 aa36.38■■■■□ 3.41
VEGFA-230ENST00000640482 TNS3Q68CZ2 1445 aa36.37■■■■□ 3.41
VEGFA-230ENST00000640482 L3MBTL2Q969R5 705 aa36.36■■■■□ 3.41
VEGFA-230ENST00000640482 SIN3AQ96ST3 1273 aa36.36■■■■□ 3.41
VEGFA-230ENST00000640482 SBNO1A3KN83 1393 aa36.36■■■■□ 3.41
VEGFA-230ENST00000640482 CDK12Q9NYV4 1490 aaPredicted RBP36.36■■■■□ 3.41
VEGFA-230ENST00000640482 NBPF1Q3BBV0 1214 aa36.35■■■■□ 3.41
VEGFA-230ENST00000640482 FNBP4Q8N3X1 1017 aaPredicted RBP36.34■■■■□ 3.41
VEGFA-230ENST00000640482 USP21Q9UK80 565 aa36.34■■■■□ 3.41
VEGFA-230ENST00000640482 PRR36Q9H6K5 1346 aa36.34■■■■□ 3.41
VEGFA-230ENST00000640482 RBM6P78332 1123 aaKnown RBP36.32■■■■□ 3.4
VEGFA-230ENST00000640482 NEUROD1Q13562 356 aa36.32■■■■□ 3.4
VEGFA-230ENST00000640482 ARHGEF10O15013 1369 aa36.29■■■■□ 3.4
VEGFA-230ENST00000640482 GPRASP1Q5JY77 1395 aa36.28■■■■□ 3.4
VEGFA-230ENST00000640482 MARF1Q9Y4F3 1742 aaKnown RBP36.28■■■■□ 3.4
VEGFA-230ENST00000640482 TRPC5Q9UL62 973 aaPredicted RBP36.28■■■■□ 3.4
VEGFA-230ENST00000640482 LMOD2Q6P5Q4 547 aa36.27■■■■□ 3.4
VEGFA-230ENST00000640482 HAP1P54257 671 aaPredicted RBP36.26■■■■□ 3.4
VEGFA-230ENST00000640482 TRIM26Q12899 539 aaPredicted RBP36.26■■■■□ 3.4
VEGFA-230ENST00000640482 ATP7BP35670 1465 aa36.24■■■■□ 3.39
VEGFA-230ENST00000640482 NGDNQ8NEJ9 315 aaKnown RBP36.24■■■■□ 3.39
VEGFA-230ENST00000640482 NUDT16Q96DE0 195 aaKnown RBP36.24■■■■□ 3.39
VEGFA-230ENST00000640482 CDK19Q9BWU1 502 aa36.24■■■■□ 3.39
VEGFA-230ENST00000640482 ITSN1Q15811 1721 aa36.22■■■■□ 3.39
VEGFA-230ENST00000640482 ATRNO75882 1429 aa36.21■■■■□ 3.39
VEGFA-230ENST00000640482 CENPJQ9HC77 1338 aaPredicted RBP36.21■■■■□ 3.39
VEGFA-230ENST00000640482 RGS12O14924 1447 aa36.2■■■■□ 3.39
VEGFA-230ENST00000640482 BCL9LQ86UU0 1499 aa36.19■■■■□ 3.38
VEGFA-230ENST00000640482 TRPM3Q9HCF6 1732 aaPredicted RBP36.19■■■■□ 3.38
VEGFA-230ENST00000640482 CABLES1Q8TDN4 633 aa36.18■■■■□ 3.38
VEGFA-230ENST00000640482 PLEKHG5O94827 1062 aa36.17■■■■□ 3.38
VEGFA-230ENST00000640482 TRPM1Q7Z4N2 1603 aa36.16■■■■□ 3.38
VEGFA-230ENST00000640482 CCDC61Q9Y6R9 512 aa36.14■■■■□ 3.38
VEGFA-230ENST00000640482 SLIT2O94813 1529 aa36.13■■■■□ 3.38
VEGFA-230ENST00000640482 ABCA3Q99758 1704 aa36.12■■■■□ 3.37
VEGFA-230ENST00000640482 UNC5CLQ8IV45 518 aa36.12■■■■□ 3.37
VEGFA-230ENST00000640482 ALS2Q96Q42 1657 aa36.12■■■■□ 3.37
VEGFA-230ENST00000640482 ROCK2O75116 1388 aaKnown RBP36.12■■■■□ 3.37
VEGFA-230ENST00000640482 PAK3O75914 559 aaPredicted RBP36.11■■■■□ 3.37
VEGFA-230ENST00000640482 SRPK2P78362 688 aaKnown RBP36.1■■■■□ 3.37
VEGFA-230ENST00000640482 UPF1Q92900 1129 aaKnown RBP eCLIP36.1■■■■□ 3.37
VEGFA-230ENST00000640482 TNKS1BP1Q9C0C2 1729 aaKnown RBP36.1■■■■□ 3.37
VEGFA-230ENST00000640482 TOPAZ1Q8N9V7 1692 aa36.1■■■■□ 3.37
VEGFA-230ENST00000640482 QRICH2Q9H0J4 1663 aa36.09■■■■□ 3.37
VEGFA-230ENST00000640482 POLR3AO14802 1390 aaPredicted RBP36.07■■■■□ 3.36
VEGFA-230ENST00000640482 PLEKHG3A1L390 1219 aa36.06■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms