RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 POLR3AO14802 1390 aaPredicted RBP19.37■□□□□ 0.69
CLN3-253ENST00000636977 IGHDP01880 384 aa19.36■□□□□ 0.69
CLN3-253ENST00000636977 C8orf34Q49A92 452 aa19.36■□□□□ 0.69
CLN3-253ENST00000636977 ADGRB1O14514 1584 aa19.36■□□□□ 0.69
CLN3-253ENST00000636977 NPM1P06748 294 aaKnown RBP eCLIP19.36■□□□□ 0.69
CLN3-253ENST00000636977 SAFB2Q14151 953 aaKnown RBP eCLIP19.36■□□□□ 0.69
CLN3-253ENST00000636977 PANK1Q8TE04 598 aa19.35■□□□□ 0.69
CLN3-253ENST00000636977 POGZQ7Z3K3 1410 aa19.35■□□□□ 0.69
CLN3-253ENST00000636977 QRICH2Q9H0J4 1663 aa19.35■□□□□ 0.69
CLN3-253ENST00000636977 PPLO60437 1756 aa19.35■□□□□ 0.69
CLN3-253ENST00000636977 MTHFSP49914 203 aa19.34■□□□□ 0.69
CLN3-253ENST00000636977 SETBP1Q9Y6X0 1596 aa19.33■□□□□ 0.69
CLN3-253ENST00000636977 SHPRHQ149N8 1683 aa19.33■□□□□ 0.68
CLN3-253ENST00000636977 COG6Q9Y2V7 657 aa19.33■□□□□ 0.68
CLN3-253ENST00000636977 NEFMP07197 916 aa19.32■□□□□ 0.68
CLN3-253ENST00000636977 TCP11L2Q8N4U5 519 aa19.32■□□□□ 0.68
CLN3-253ENST00000636977 TNNQ9UQP3 1299 aa19.32■□□□□ 0.68
CLN3-253ENST00000636977 FRAT1Q92837 279 aaPredicted RBP19.32■□□□□ 0.68
CLN3-253ENST00000636977 ZC3H13Q5T200 1668 aaKnown RBP19.31■□□□□ 0.68
CLN3-253ENST00000636977 FAM161AQ3B820 660 aa19.31■□□□□ 0.68
CLN3-253ENST00000636977 CABP2Q9NPB3 220 aa19.31■□□□□ 0.68
CLN3-253ENST00000636977 SIGLEC1Q9BZZ2 1709 aa19.3■□□□□ 0.68
CLN3-253ENST00000636977 ABCC3O15438 1527 aa19.3■□□□□ 0.68
CLN3-253ENST00000636977 BCL2L13Q9BXK5 485 aa19.3■□□□□ 0.68
CLN3-253ENST00000636977 MLH3Q9UHC1 1453 aa19.29■□□□□ 0.68
CLN3-253ENST00000636977 RUNDC1Q96C34 613 aa19.29■□□□□ 0.68
CLN3-253ENST00000636977 CANXP27824 592 aaKnown RBP19.29■□□□□ 0.68
CLN3-253ENST00000636977 STK26Q9P289 416 aa19.28■□□□□ 0.68
CLN3-253ENST00000636977 HECW2Q9P2P5 1572 aa19.28■□□□□ 0.68
CLN3-253ENST00000636977 CGNL1Q0VF96 1302 aa19.26■□□□□ 0.67
CLN3-253ENST00000636977 TULP4Q9NRJ4 1543 aa19.26■□□□□ 0.67
CLN3-253ENST00000636977 RLBP1P12271 317 aa19.26■□□□□ 0.67
CLN3-253ENST00000636977 GLI2P10070 1586 aa19.25■□□□□ 0.67
CLN3-253ENST00000636977 RARSP54136 660 aaKnown RBP19.25■□□□□ 0.67
CLN3-253ENST00000636977 IDI1Q13907 227 aa19.25■□□□□ 0.67
CLN3-253ENST00000636977 DDRGK1Q96HY6 314 aa19.25■□□□□ 0.67
CLN3-253ENST00000636977 RPGRIP1LQ68CZ1 1315 aa19.25■□□□□ 0.67
CLN3-253ENST00000636977 IQSEC2Q5JU85 1478 aa19.25■□□□□ 0.67
CLN3-253ENST00000636977 PDE3AQ14432 1141 aa19.24■□□□□ 0.67
CLN3-253ENST00000636977 OSCARQ8IYS5 282 aa19.24■□□□□ 0.67
CLN3-253ENST00000636977 CLUAP1Q96AJ1 413 aa19.24■□□□□ 0.67
CLN3-253ENST00000636977 NGEFQ8N5V2 710 aa19.24■□□□□ 0.67
CLN3-253ENST00000636977 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
CLN3-253ENST00000636977 EVC2Q86UK5 1308 aa19.23■□□□□ 0.67
CLN3-253ENST00000636977 CAMSAP1Q5T5Y3 1602 aa19.23■□□□□ 0.67
CLN3-253ENST00000636977 U2AF1L5P0DN76 240 aaPredicted RBP19.23■□□□□ 0.67
CLN3-253ENST00000636977 U2AF1Q01081 240 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLN3-253ENST00000636977 VGFO15240 615 aaPredicted RBP19.22■□□□□ 0.67
CLN3-253ENST00000636977 NEXMIFQ5QGS0 1516 aa19.21■□□□□ 0.67
CLN3-253ENST00000636977 ARHGEF28Q8N1W1 1705 aaKnown RBP19.21■□□□□ 0.67
CLN3-253ENST00000636977 SEC24BO95487 1268 aa19.2■□□□□ 0.66
CLN3-253ENST00000636977 GGNBP2Q9H3C7 697 aa19.2■□□□□ 0.66
CLN3-253ENST00000636977 PCDHB15Q9Y5E8 787 aa19.2■□□□□ 0.66
CLN3-253ENST00000636977 ANKRD36BQ8N2N9 1353 aa19.2■□□□□ 0.66
CLN3-253ENST00000636977 CFAP53Q96M91 514 aa19.2■□□□□ 0.66
CLN3-253ENST00000636977 PPM1GO15355 546 aaPredicted RBP19.19■□□□□ 0.66
CLN3-253ENST00000636977 SRPK2P78362 688 aaKnown RBP19.18■□□□□ 0.66
CLN3-253ENST00000636977 CFAP74Q9C0B2 1584 aa19.18■□□□□ 0.66
CLN3-253ENST00000636977 WDR63Q8IWG1 891 aa19.18■□□□□ 0.66
CLN3-253ENST00000636977 TSR2Q969E8 191 aaKnown RBP19.18■□□□□ 0.66
CLN3-253ENST00000636977 A0A1W2PP64 1363 aa19.17■□□□□ 0.66
CLN3-253ENST00000636977 PIK3C2BO00750 1634 aa19.17■□□□□ 0.66
CLN3-253ENST00000636977 MINK1Q8N4C8 1332 aaPredicted RBP19.17■□□□□ 0.66
CLN3-253ENST00000636977 YEATS2Q9ULM3 1422 aa19.17■□□□□ 0.66
CLN3-253ENST00000636977 DIP2CQ9Y2E4 1556 aa19.16■□□□□ 0.66
CLN3-253ENST00000636977 USP32Q8NFA0 1604 aa19.16■□□□□ 0.66
CLN3-253ENST00000636977 USP19O94966 1318 aa19.16■□□□□ 0.66
CLN3-253ENST00000636977 U2SURPO15042 1029 aaKnown RBP19.16■□□□□ 0.66
CLN3-253ENST00000636977 NFKBIBQ15653 356 aa19.15■□□□□ 0.66
CLN3-253ENST00000636977 DAXXQ9UER7 740 aaPredicted RBP19.15■□□□□ 0.66
CLN3-253ENST00000636977 FBXO31Q5XUX0 539 aaPredicted RBP19.14■□□□□ 0.66
CLN3-253ENST00000636977 PKNOX2Q96KN3 472 aa19.14■□□□□ 0.66
CLN3-253ENST00000636977 USP35Q9P2H5 1018 aa19.14■□□□□ 0.65
CLN3-253ENST00000636977 MYO5BQ9ULV0 1848 aa19.13■□□□□ 0.65
CLN3-253ENST00000636977 CCDC27Q2M243 656 aa19.13■□□□□ 0.65
CLN3-253ENST00000636977 PRAM1Q96QH2 718 aa19.13■□□□□ 0.65
CLN3-253ENST00000636977 NINLQ9Y2I6 1382 aa19.12■□□□□ 0.65
CLN3-253ENST00000636977 FYB1O15117 783 aa19.11■□□□□ 0.65
CLN3-253ENST00000636977 FBLN1P23142 703 aa19.11■□□□□ 0.65
CLN3-253ENST00000636977 PUS7Q96PZ0 661 aaKnown RBP19.11■□□□□ 0.65
CLN3-253ENST00000636977 PLEKHF1Q96S99 279 aa19.11■□□□□ 0.65
CLN3-253ENST00000636977 ABCC11Q96J66 1382 aa19.1■□□□□ 0.65
CLN3-253ENST00000636977 NEO1Q92859 1461 aa19.1■□□□□ 0.65
CLN3-253ENST00000636977 MYH16Q9H6N6 1097 aa19.1■□□□□ 0.65
CLN3-253ENST00000636977 EXOSC9Q06265 439 aaKnown RBP19.09■□□□□ 0.65
CLN3-253ENST00000636977 TRIM35Q9UPQ4 493 aa19.09■□□□□ 0.65
CLN3-253ENST00000636977 PDZRN3Q9UPQ7 1066 aa19.09■□□□□ 0.65
CLN3-253ENST00000636977 NSD2O96028 1365 aa19.09■□□□□ 0.65
CLN3-253ENST00000636977 POGKQ9P215 609 aa19.08■□□□□ 0.65
CLN3-253ENST00000636977 TMPOP42166 694 aaKnown RBP19.08■□□□□ 0.64
CLN3-253ENST00000636977 PTPRMP28827 1452 aa19.08■□□□□ 0.64
CLN3-253ENST00000636977 SLC52A1Q9NWF4 448 aa19.08■□□□□ 0.64
CLN3-253ENST00000636977 ARHGAP31Q2M1Z3 1444 aa19.07■□□□□ 0.64
CLN3-253ENST00000636977 MAPK8IP3Q9UPT6 1336 aa19.07■□□□□ 0.64
CLN3-253ENST00000636977 CD163L1Q9NR16 1453 aa19.06■□□□□ 0.64
CLN3-253ENST00000636977 PMFBP1Q8TBY8 1022 aa19.06■□□□□ 0.64
CLN3-253ENST00000636977 FRAT2O75474 233 aaPredicted RBP19.06■□□□□ 0.64
CLN3-253ENST00000636977 ADGRB2O60241 1585 aa19.06■□□□□ 0.64
CLN3-253ENST00000636977 RICTORQ6R327 1708 aa19.06■□□□□ 0.64
CLN3-253ENST00000636977 MVPQ14764 893 aaKnown RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms