RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 SENP2Q9HC62 589 aa3.51□□□□□ -1.85
SMARCB1-209ENST00000635578 SEMA3EO15041 775 aa3.5□□□□□ -1.85
SMARCB1-209ENST00000635578 VEGFBP49765 207 aa3.5□□□□□ -1.85
SMARCB1-209ENST00000635578 BRICD5Q6PL45 260 aa3.5□□□□□ -1.85
SMARCB1-209ENST00000635578 BMP1P13497 986 aa3.49□□□□□ -1.85
SMARCB1-209ENST00000635578 GMPRP36959 345 aa3.49□□□□□ -1.85
SMARCB1-209ENST00000635578 GCGRP47871 477 aa3.49□□□□□ -1.85
SMARCB1-209ENST00000635578 HIC1Q14526 733 aa3.49□□□□□ -1.85
SMARCB1-209ENST00000635578 CCDC24Q8N4L8 307 aa3.49□□□□□ -1.85
SMARCB1-209ENST00000635578 TSHZ2Q9NRE2 1034 aa3.49□□□□□ -1.85
SMARCB1-209ENST00000635578 DAXXQ9UER7 740 aaPredicted RBP3.49□□□□□ -1.85
SMARCB1-209ENST00000635578 FAM181BA6NEQ2 426 aa3.48□□□□□ -1.85
SMARCB1-209ENST00000635578 ALDH1A1P00352 501 aa3.48□□□□□ -1.85
SMARCB1-209ENST00000635578 MSS51Q4VC12 460 aa3.48□□□□□ -1.85
SMARCB1-209ENST00000635578 RBM26Q5T8P6 1007 aaKnown RBP3.48□□□□□ -1.85
SMARCB1-209ENST00000635578 SLC16A10Q8TF71 515 aa3.48□□□□□ -1.85
SMARCB1-209ENST00000635578 KIFC2Q96AC6 838 aa3.48□□□□□ -1.85
SMARCB1-209ENST00000635578 RC3H1Q5TC82 1133 aaKnown RBP3.47□□□□□ -1.85
SMARCB1-209ENST00000635578 SULF1Q8IWU6 871 aa3.47□□□□□ -1.85
SMARCB1-209ENST00000635578 ZSCAN1Q8NBB4 408 aa3.47□□□□□ -1.85
SMARCB1-209ENST00000635578 PHOX2BQ99453 314 aa3.47□□□□□ -1.85
SMARCB1-209ENST00000635578 REPIN1Q9BWE0 567 aaKnown RBP3.47□□□□□ -1.85
SMARCB1-209ENST00000635578 SALL2Q9Y467 1007 aaPredicted RBP3.47□□□□□ -1.85
SMARCB1-209ENST00000635578 GNPATO15228 680 aa3.46□□□□□ -1.86
SMARCB1-209ENST00000635578 SKOR1P84550 965 aa3.46□□□□□ -1.86
SMARCB1-209ENST00000635578 Q3C1V9 767 aa3.46□□□□□ -1.86
SMARCB1-209ENST00000635578 GRIPAP1Q4V328 841 aa3.46□□□□□ -1.86
SMARCB1-209ENST00000635578 IRF7Q92985 503 aa3.46□□□□□ -1.86
SMARCB1-209ENST00000635578 NXF1Q9UBU9 619 aaKnown RBP3.46□□□□□ -1.86
SMARCB1-209ENST00000635578 LOC100996750A0A140TA64 210 aa3.45□□□□□ -1.86
SMARCB1-209ENST00000635578 DXOO77932 396 aaKnown RBP3.45□□□□□ -1.86
SMARCB1-209ENST00000635578 MMP16P51512 607 aa3.45□□□□□ -1.86
SMARCB1-209ENST00000635578 TRIM46Q7Z4K8 759 aa3.45□□□□□ -1.86
SMARCB1-209ENST00000635578 HLA-CQ95604 372 aa3.45□□□□□ -1.86
SMARCB1-209ENST00000635578 USB1Q9BQ65 265 aaKnown RBP3.45□□□□□ -1.86
SMARCB1-209ENST00000635578 KRTAP4-6Q9BYQ5 205 aa3.45□□□□□ -1.86
SMARCB1-209ENST00000635578 ERBB4Q15303 1308 aa3.44□□□□□ -1.86
SMARCB1-209ENST00000635578 CAPN5O15484 640 aaPredicted RBP3.44□□□□□ -1.86
SMARCB1-209ENST00000635578 LORP23490 312 aaPredicted RBP3.44□□□□□ -1.86
SMARCB1-209ENST00000635578 P3H3Q8IVL6 736 aa3.44□□□□□ -1.86
SMARCB1-209ENST00000635578 EHBP1Q8NDI1 1231 aa3.44□□□□□ -1.86
SMARCB1-209ENST00000635578 WASF2Q9Y6W5 498 aa3.44□□□□□ -1.86
SMARCB1-209ENST00000635578 H3BM21 787 aa3.43□□□□□ -1.86
SMARCB1-209ENST00000635578 GPR37O15354 613 aa3.43□□□□□ -1.86
SMARCB1-209ENST00000635578 WNT7BP56706 349 aa3.43□□□□□ -1.86
SMARCB1-209ENST00000635578 SOBPA7XYQ1 873 aa3.42□□□□□ -1.86
SMARCB1-209ENST00000635578 KDM4AO75164 1064 aa3.42□□□□□ -1.86
SMARCB1-209ENST00000635578 GUCA2AQ02747 115 aa3.42□□□□□ -1.86
SMARCB1-209ENST00000635578 SYMPKQ92797 1274 aaKnown RBP3.42□□□□□ -1.86
SMARCB1-209ENST00000635578 RTN4Q9NQC3 1192 aaKnown RBP3.42□□□□□ -1.86
SMARCB1-209ENST00000635578 TESPA1A2RU30 521 aaPredicted RBP3.41□□□□□ -1.86
SMARCB1-209ENST00000635578 CD46P15529 392 aa3.41□□□□□ -1.86
SMARCB1-209ENST00000635578 JUNDP17535 347 aa3.41□□□□□ -1.86
SMARCB1-209ENST00000635578 SUZ12Q15022 739 aaKnown RBP3.41□□□□□ -1.86
SMARCB1-209ENST00000635578 SMYD5Q6GMV2 418 aa3.41□□□□□ -1.86
SMARCB1-209ENST00000635578 PTCRAQ6ISU1 281 aaPredicted RBP3.41□□□□□ -1.86
SMARCB1-209ENST00000635578 ZFP42Q96MM3 310 aa3.41□□□□□ -1.86
SMARCB1-209ENST00000635578 TLL2Q9Y6L7 1015 aa3.41□□□□□ -1.86
SMARCB1-209ENST00000635578 HOXA2O43364 376 aa3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 MDM2Q00987 491 aaPredicted RBP3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 LINC01559Q495D7 138 aa3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 AMER1Q5JTC6 1135 aaPredicted RBP3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 GPIHBP1Q8IV16 184 aa3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 NPAS3Q8IXF0 933 aa3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 KCTD17Q8N5Z5 321 aa3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 PURBQ96QR8 312 aaKnown RBP3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 NUDT12Q9BQG2 462 aa3.4□□□□□ -1.87
SMARCB1-209ENST00000635578 SIAH2O43255 324 aa3.39□□□□□ -1.87
SMARCB1-209ENST00000635578 USP46P62068 366 aa3.39□□□□□ -1.87
SMARCB1-209ENST00000635578 C6orf229H3BNL8 230 aa3.38□□□□□ -1.87
SMARCB1-209ENST00000635578 MS4A1P11836 297 aa3.38□□□□□ -1.87
SMARCB1-209ENST00000635578 SH3BP2P78314 561 aa3.38□□□□□ -1.87
SMARCB1-209ENST00000635578 NNTQ13423 1086 aa3.38□□□□□ -1.87
SMARCB1-209ENST00000635578 SCARF1Q14162 830 aa3.38□□□□□ -1.87
SMARCB1-209ENST00000635578 MRPL14Q6P1L8 145 aaKnown RBP3.38□□□□□ -1.87
SMARCB1-209ENST00000635578 CCNYL3P0C7X3 344 aa3.37□□□□□ -1.87
SMARCB1-209ENST00000635578 WDR4P57081 412 aaKnown RBP3.37□□□□□ -1.87
SMARCB1-209ENST00000635578 C6orf118Q5T5N4 469 aa3.37□□□□□ -1.87
SMARCB1-209ENST00000635578 RETREG3Q86VR2 466 aa3.37□□□□□ -1.87
SMARCB1-209ENST00000635578 NUTM1Q86Y26 1132 aa3.37□□□□□ -1.87
SMARCB1-209ENST00000635578 BAP1Q92560 729 aa3.37□□□□□ -1.87
SMARCB1-209ENST00000635578 MAN1A2O60476 641 aa3.36□□□□□ -1.87
SMARCB1-209ENST00000635578 ARID5BQ14865 1188 aa3.36□□□□□ -1.87
SMARCB1-209ENST00000635578 UNC93B1Q9H1C4 597 aa3.36□□□□□ -1.87
SMARCB1-209ENST00000635578 PLEKHG3A1L390 1219 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 GDF11O95390 407 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 ADH1CP00326 375 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 VSIG8P0DPA2 414 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 FDX1P10109 184 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 TIMP2P16035 220 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 MAP2K5Q13163 448 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 TMEM151AQ8N4L1 468 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 ZNF511Q8NB15 262 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 ZFAND3Q9H8U3 227 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 PCDHGC3Q9UN70 934 aa3.35□□□□□ -1.87
SMARCB1-209ENST00000635578 IRF6O14896 467 aa3.34□□□□□ -1.87
SMARCB1-209ENST00000635578 ZIC2O95409 532 aaPredicted RBP3.34□□□□□ -1.87
SMARCB1-209ENST00000635578 BMP2P12643 396 aa3.34□□□□□ -1.87
SMARCB1-209ENST00000635578 GSK3AP49840 483 aa3.34□□□□□ -1.87
SMARCB1-209ENST00000635578 RASSF7Q02833 373 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms