RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.96■□□□□ 0.46
COL5A1-208ENST00000618395 KIF2AO00139 706 aaPredicted RBP17.95■□□□□ 0.46
COL5A1-208ENST00000618395 CCDC192P0DO97 292 aa17.95■□□□□ 0.46
COL5A1-208ENST00000618395 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.95■□□□□ 0.46
COL5A1-208ENST00000618395 KINO60870 393 aaKnown RBP17.95■□□□□ 0.46
COL5A1-208ENST00000618395 NOL10Q9BSC4 688 aaKnown RBP17.95■□□□□ 0.46
COL5A1-208ENST00000618395 EXOC6Q8TAG9 804 aa17.95■□□□□ 0.46
COL5A1-208ENST00000618395 IBSPP21815 317 aaPredicted RBP17.95■□□□□ 0.46
COL5A1-208ENST00000618395 MAP2K1Q02750 393 aaPredicted RBP17.95■□□□□ 0.46
COL5A1-208ENST00000618395 CFAP45Q9UL16 551 aa17.95■□□□□ 0.46
COL5A1-208ENST00000618395 ANKRD62A6NC57 917 aa17.94■□□□□ 0.46
COL5A1-208ENST00000618395 FILIP1LQ4L180 1135 aa17.94■□□□□ 0.46
COL5A1-208ENST00000618395 CCDC181Q5TID7 509 aa17.94■□□□□ 0.46
COL5A1-208ENST00000618395 SYNE3Q6ZMZ3 975 aa17.94■□□□□ 0.46
COL5A1-208ENST00000618395 CEP63Q96MT8 703 aa17.94■□□□□ 0.46
COL5A1-208ENST00000618395 TXLNBQ8N3L3 684 aa17.94■□□□□ 0.46
COL5A1-208ENST00000618395 WDR66Q8TBY9 1149 aa17.94■□□□□ 0.46
COL5A1-208ENST00000618395 MCM3P25205 808 aa17.94■□□□□ 0.46
COL5A1-208ENST00000618395 GTPBP4Q9BZE4 634 aaKnown RBP17.94■□□□□ 0.46
COL5A1-208ENST00000618395 SPAG9O60271 1321 aaKnown RBP17.94■□□□□ 0.46
COL5A1-208ENST00000618395 GTF2F1P35269 517 aaKnown RBP eCLIP17.93■□□□□ 0.46
COL5A1-208ENST00000618395 SEPT6Q14141 434 aa17.93■□□□□ 0.46
COL5A1-208ENST00000618395 LUC7LQ9NQ29 371 aaKnown RBP17.93■□□□□ 0.46
COL5A1-208ENST00000618395 INTS3Q68E01 1043 aaKnown RBP17.93■□□□□ 0.46
COL5A1-208ENST00000618395 CHMP7Q8WUX9 453 aaPredicted RBP17.93■□□□□ 0.46
COL5A1-208ENST00000618395 U2AF1L5P0DN76 240 aaPredicted RBP17.92■□□□□ 0.46
COL5A1-208ENST00000618395 U2AF1Q01081 240 aaKnown RBP eCLIP17.92■□□□□ 0.46
COL5A1-208ENST00000618395 CFAP57Q96MR6 1250 aa17.92■□□□□ 0.46
COL5A1-208ENST00000618395 LMOD2Q6P5Q4 547 aa17.92■□□□□ 0.46
COL5A1-208ENST00000618395 SWAP70Q9UH65 585 aa17.92■□□□□ 0.46
COL5A1-208ENST00000618395 CPLX1O14810 134 aa17.91■□□□□ 0.46
COL5A1-208ENST00000618395 LRRFIP1Q32MZ4 808 aaKnown RBP17.91■□□□□ 0.46
COL5A1-208ENST00000618395 NLRP13Q86W25 1043 aa17.91■□□□□ 0.46
COL5A1-208ENST00000618395 TOMM22Q9NS69 142 aa17.91■□□□□ 0.46
COL5A1-208ENST00000618395 IVLP07476 585 aa17.9■□□□□ 0.46
COL5A1-208ENST00000618395 RBM28Q9NW13 759 aaKnown RBP17.9■□□□□ 0.46
COL5A1-208ENST00000618395 ZNHIT6Q9NWK9 470 aaKnown RBP17.9■□□□□ 0.46
COL5A1-208ENST00000618395 CCNB3Q8WWL7 1395 aa17.9■□□□□ 0.46
COL5A1-208ENST00000618395 ANO2Q9NQ90 1003 aa17.9■□□□□ 0.46
COL5A1-208ENST00000618395 POLR3GO15318 223 aaPredicted RBP17.9■□□□□ 0.46
COL5A1-208ENST00000618395 PLEKHD1A6NEE1 506 aa17.9■□□□□ 0.46
COL5A1-208ENST00000618395 ZFYVE27Q5T4F4 411 aa17.9■□□□□ 0.46
COL5A1-208ENST00000618395 ROCK2O75116 1388 aaKnown RBP17.89■□□□□ 0.45
COL5A1-208ENST00000618395 TRIM34Q9BYJ4 488 aa17.89■□□□□ 0.45
COL5A1-208ENST00000618395 PRPF40AO75400 957 aaKnown RBP17.89■□□□□ 0.45
COL5A1-208ENST00000618395 CCDC9Q9Y3X0 531 aaKnown RBP17.89■□□□□ 0.45
COL5A1-208ENST00000618395 RNF187Q5TA31 235 aaPredicted RBP17.89■□□□□ 0.45
COL5A1-208ENST00000618395 SLC4A10Q6U841 1118 aa17.89■□□□□ 0.45
COL5A1-208ENST00000618395 KIF18AQ8NI77 898 aa17.89■□□□□ 0.45
COL5A1-208ENST00000618395 PAK3O75914 559 aaPredicted RBP17.88■□□□□ 0.45
COL5A1-208ENST00000618395 LRRFIP2Q9Y608 721 aaKnown RBP17.88■□□□□ 0.45
COL5A1-208ENST00000618395 PLIN1O60240 522 aa17.88■□□□□ 0.45
COL5A1-208ENST00000618395 PPM1EQ8WY54 764 aa17.88■□□□□ 0.45
COL5A1-208ENST00000618395 KAT6BQ8WYB5 2073 aa17.88■□□□□ 0.45
COL5A1-208ENST00000618395 FAM177A1Q8N128 213 aaPredicted RBP17.87■□□□□ 0.45
COL5A1-208ENST00000618395 DAAM2Q86T65 1068 aa17.87■□□□□ 0.45
COL5A1-208ENST00000618395 DCAF11Q8TEB1 546 aa17.87■□□□□ 0.45
COL5A1-208ENST00000618395 FILIP1Q7Z7B0 1213 aa17.87■□□□□ 0.45
COL5A1-208ENST00000618395 FAM114A1Q8IWE2 563 aa17.87■□□□□ 0.45
COL5A1-208ENST00000618395 HOMEZQ8IX15 550 aa17.87■□□□□ 0.45
COL5A1-208ENST00000618395 TTC31Q49AM3 519 aaPredicted RBP17.86■□□□□ 0.45
COL5A1-208ENST00000618395 SUDS3Q9H7L9 328 aaPredicted RBP17.85■□□□□ 0.45
COL5A1-208ENST00000618395 PPFIBP1Q86W92 1011 aa17.85■□□□□ 0.45
COL5A1-208ENST00000618395 PDCP20941 246 aa17.85■□□□□ 0.45
COL5A1-208ENST00000618395 MCM2P49736 904 aa17.85■□□□□ 0.45
COL5A1-208ENST00000618395 SAFBQ15424 915 aaKnown RBP eCLIP17.85■□□□□ 0.45
COL5A1-208ENST00000618395 KIF15Q9NS87 1388 aa17.85■□□□□ 0.45
COL5A1-208ENST00000618395 PTPN14Q15678 1187 aa17.85■□□□□ 0.45
COL5A1-208ENST00000618395 SETD5Q9C0A6 1442 aa17.85■□□□□ 0.45
COL5A1-208ENST00000618395 SERPINC1P01008 464 aa17.84■□□□□ 0.45
COL5A1-208ENST00000618395 ZKSCAN2Q63HK3 967 aa17.84■□□□□ 0.45
COL5A1-208ENST00000618395 MAGEC2Q9UBF1 373 aaPredicted RBP17.83■□□□□ 0.45
COL5A1-208ENST00000618395 SPDYE4A6NLX3 237 aa17.83■□□□□ 0.44
COL5A1-208ENST00000618395 PIP4K2AP48426 406 aaPredicted RBP17.83■□□□□ 0.44
COL5A1-208ENST00000618395 KCNH8Q96L42 1107 aa17.83■□□□□ 0.44
COL5A1-208ENST00000618395 TCEAL9Q9UHQ7 104 aa17.83■□□□□ 0.44
COL5A1-208ENST00000618395 DDX19BQ9UMR2 479 aa17.83■□□□□ 0.44
COL5A1-208ENST00000618395 KRT222Q8N1A0 295 aa17.83■□□□□ 0.44
COL5A1-208ENST00000618395 LMAN1P49257 510 aa17.82■□□□□ 0.44
COL5A1-208ENST00000618395 CBFA2T2O43439 604 aa17.82■□□□□ 0.44
COL5A1-208ENST00000618395 CFDP1Q9UEE9 299 aaPredicted RBP17.82■□□□□ 0.44
COL5A1-208ENST00000618395 CWC22Q9HCG8 908 aaKnown RBP17.82■□□□□ 0.44
COL5A1-208ENST00000618395 LIG1P18858 919 aa17.82■□□□□ 0.44
COL5A1-208ENST00000618395 AAMPQ13685 434 aa17.81■□□□□ 0.44
COL5A1-208ENST00000618395 TXLNAP40222 546 aa17.81■□□□□ 0.44
COL5A1-208ENST00000618395 CCDC148Q8NFR7 591 aa17.81■□□□□ 0.44
COL5A1-208ENST00000618395 FMNL2Q96PY5 1086 aa17.81■□□□□ 0.44
COL5A1-208ENST00000618395 CCDC175P0C221 793 aa17.81■□□□□ 0.44
COL5A1-208ENST00000618395 JAKMIP3Q5VZ66 844 aa17.81■□□□□ 0.44
COL5A1-208ENST00000618395 KIF3BO15066 747 aa17.81■□□□□ 0.44
COL5A1-208ENST00000618395 TMX4Q9H1E5 349 aaPredicted RBP17.8■□□□□ 0.44
COL5A1-208ENST00000618395 ROCK1Q13464 1354 aa17.8■□□□□ 0.44
COL5A1-208ENST00000618395 SRPK2P78362 688 aaKnown RBP17.8■□□□□ 0.44
COL5A1-208ENST00000618395 TNMDQ9H2S6 317 aa17.8■□□□□ 0.44
COL5A1-208ENST00000618395 KANK1Q14678 1352 aa17.8■□□□□ 0.44
COL5A1-208ENST00000618395 MCM5P33992 734 aa17.8■□□□□ 0.44
COL5A1-208ENST00000618395 STAMBPO95630 424 aa17.79■□□□□ 0.44
COL5A1-208ENST00000618395 HSPA4P34932 840 aa17.79■□□□□ 0.44
COL5A1-208ENST00000618395 BRPF1P55201 1214 aaPredicted RBP17.79■□□□□ 0.44
COL5A1-208ENST00000618395 PRIMPOLQ96LW4 560 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms