RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 KDM5DQ9BY66 1539 aa16.54■□□□□ 0.24
MSH6-214ENST00000616033 NUTM2DQ5VT03 806 aaPredicted RBP16.53■□□□□ 0.24
MSH6-214ENST00000616033 DZIP1LQ8IYY4 767 aaKnown RBP16.53■□□□□ 0.24
MSH6-214ENST00000616033 SPAG9O60271 1321 aaKnown RBP16.53■□□□□ 0.24
MSH6-214ENST00000616033 MTHFSP49914 203 aa16.52■□□□□ 0.24
MSH6-214ENST00000616033 FOXD4L5Q5VV16 416 aaPredicted RBP16.52■□□□□ 0.24
MSH6-214ENST00000616033 FOXD4L4Q8WXT5 416 aaPredicted RBP16.52■□□□□ 0.24
MSH6-214ENST00000616033 KIAA1211Q6ZU35 1233 aa16.52■□□□□ 0.24
MSH6-214ENST00000616033 ADGBQ8N7X0 1667 aa16.52■□□□□ 0.24
MSH6-214ENST00000616033 KIF3BO15066 747 aa16.52■□□□□ 0.23
MSH6-214ENST00000616033 C1orf115Q9H7X2 142 aa16.52■□□□□ 0.23
MSH6-214ENST00000616033 ANP32BQ92688 251 aaKnown RBP16.51■□□□□ 0.23
MSH6-214ENST00000616033 DDX11L8A8MPP1 907 aa16.51■□□□□ 0.23
MSH6-214ENST00000616033 ZKSCAN2Q63HK3 967 aa16.51■□□□□ 0.23
MSH6-214ENST00000616033 PLA2R1Q13018 1463 aa16.51■□□□□ 0.23
MSH6-214ENST00000616033 WDR7Q9Y4E6 1490 aa16.5■□□□□ 0.23
MSH6-214ENST00000616033 FGD1P98174 961 aa16.5■□□□□ 0.23
MSH6-214ENST00000616033 EXOSC9Q06265 439 aaKnown RBP16.5■□□□□ 0.23
MSH6-214ENST00000616033 CYB5RLQ6IPT4 315 aa16.5■□□□□ 0.23
MSH6-214ENST00000616033 SYCP2Q9BX26 1530 aa16.5■□□□□ 0.23
MSH6-214ENST00000616033 MVPQ14764 893 aaKnown RBP16.5■□□□□ 0.23
MSH6-214ENST00000616033 ELL2O00472 640 aaPredicted RBP16.5■□□□□ 0.23
MSH6-214ENST00000616033 RUNDC1Q96C34 613 aa16.5■□□□□ 0.23
MSH6-214ENST00000616033 DDX49Q9Y6V7 483 aaKnown RBP16.5■□□□□ 0.23
MSH6-214ENST00000616033 TRPM1Q7Z4N2 1603 aa16.49■□□□□ 0.23
MSH6-214ENST00000616033 MPNDQ8N594 471 aa16.49■□□□□ 0.23
MSH6-214ENST00000616033 APBB1O00213 710 aa16.48■□□□□ 0.23
MSH6-214ENST00000616033 MSNP26038 577 aaKnown RBP16.48■□□□□ 0.23
MSH6-214ENST00000616033 SSFA2P28290 1259 aa16.48■□□□□ 0.23
MSH6-214ENST00000616033 ANKRD45Q5TZF3 282 aa16.48■□□□□ 0.23
MSH6-214ENST00000616033 GBP4Q96PP9 640 aa16.48■□□□□ 0.23
MSH6-214ENST00000616033 R3HCC1Q9Y3T6 440 aaKnown RBP16.48■□□□□ 0.23
MSH6-214ENST00000616033 GPRASP1Q5JY77 1395 aa16.47■□□□□ 0.23
MSH6-214ENST00000616033 RSPH4AQ5TD94 716 aa16.47■□□□□ 0.23
MSH6-214ENST00000616033 TMEM132EQ6IEE7 984 aa16.47■□□□□ 0.23
MSH6-214ENST00000616033 GGT6Q6P531 493 aa16.47■□□□□ 0.23
MSH6-214ENST00000616033 CCDC141Q6ZP82 1450 aa16.47■□□□□ 0.23
MSH6-214ENST00000616033 CD2BP2O95400 341 aaKnown RBP16.47■□□□□ 0.23
MSH6-214ENST00000616033 TRAPPC8Q9Y2L5 1435 aa16.46■□□□□ 0.23
MSH6-214ENST00000616033 ITSN2Q9NZM3 1697 aa16.46■□□□□ 0.23
MSH6-214ENST00000616033 NLRP1Q9C000 1473 aa16.46■□□□□ 0.23
MSH6-214ENST00000616033 CDC42BPAQ5VT25 1732 aa16.46■□□□□ 0.23
MSH6-214ENST00000616033 NOB1Q9ULX3 412 aaKnown RBP16.46■□□□□ 0.23
MSH6-214ENST00000616033 NASPP49321 788 aaPredicted RBP16.46■□□□□ 0.23
MSH6-214ENST00000616033 TRIM27P14373 513 aa16.45■□□□□ 0.22
MSH6-214ENST00000616033 ASXL1Q8IXJ9 1541 aa16.45■□□□□ 0.22
MSH6-214ENST00000616033 TTC37Q6PGP7 1564 aa16.45■□□□□ 0.22
MSH6-214ENST00000616033 TMEM57Q8N5G2 664 aa16.45■□□□□ 0.22
MSH6-214ENST00000616033 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.45■□□□□ 0.229e-9■■■■■ 31
MSH6-214ENST00000616033 FOXD4L6Q3SYB3 417 aaPredicted RBP16.44■□□□□ 0.22
MSH6-214ENST00000616033 FOXD4L3Q6VB84 417 aaPredicted RBP16.44■□□□□ 0.22
MSH6-214ENST00000616033 SSH1Q8WYL5 1049 aa16.44■□□□□ 0.22
MSH6-214ENST00000616033 MCTP1Q6DN14 999 aa16.44■□□□□ 0.22
MSH6-214ENST00000616033 CHAMP1Q96JM3 812 aa16.44■□□□□ 0.22
MSH6-214ENST00000616033 BBXQ8WY36 941 aaPredicted RBP16.43■□□□□ 0.22
MSH6-214ENST00000616033 CFAP53Q96M91 514 aa16.43■□□□□ 0.22
MSH6-214ENST00000616033 INSRP06213 1382 aa16.43■□□□□ 0.22
MSH6-214ENST00000616033 CAVIN1Q6NZI2 390 aaKnown RBP16.43■□□□□ 0.22
MSH6-214ENST00000616033 ABCC2Q92887 1545 aa16.43■□□□□ 0.22
MSH6-214ENST00000616033 CHMP4BQ9H444 224 aaKnown RBP16.42■□□□□ 0.22
MSH6-214ENST00000616033 SCAPERQ9BY12 1400 aa16.42■□□□□ 0.22
MSH6-214ENST00000616033 SAMD9LQ8IVG5 1584 aa16.42■□□□□ 0.22
MSH6-214ENST00000616033 GOLGA6L22H0YM25 854 aa16.42■□□□□ 0.22
MSH6-214ENST00000616033 XPCQ01831 940 aaPredicted RBP16.42■□□□□ 0.22
MSH6-214ENST00000616033 ADGRF5Q8IZF2 1346 aa16.41■□□□□ 0.22
MSH6-214ENST00000616033 PLCD3Q8N3E9 789 aa16.41■□□□□ 0.22
MSH6-214ENST00000616033 PRDM15P57071 1507 aaPredicted RBP16.4■□□□□ 0.22
MSH6-214ENST00000616033 RAPGEF3O95398 923 aa16.4■□□□□ 0.22
MSH6-214ENST00000616033 PIK3C2GO75747 1445 aa16.4■□□□□ 0.22
MSH6-214ENST00000616033 RNF214Q8ND24 703 aa16.39■□□□□ 0.22
MSH6-214ENST00000616033 GAS2L2Q8NHY3 880 aa16.39■□□□□ 0.21
MSH6-214ENST00000616033 ADCY10Q96PN6 1610 aa16.39■□□□□ 0.21
MSH6-214ENST00000616033 NOL8Q76FK4 1167 aaKnown RBP16.38■□□□□ 0.21
MSH6-214ENST00000616033 NSD3Q9BZ95 1437 aa16.38■□□□□ 0.21
MSH6-214ENST00000616033 PLCH2O75038 1416 aa16.38■□□□□ 0.21
MSH6-214ENST00000616033 DDX19BQ9UMR2 479 aa16.38■□□□□ 0.21
MSH6-214ENST00000616033 CROCC2H7BZ55 1655 aa16.38■□□□□ 0.21
MSH6-214ENST00000616033 VGLL3A8MV65 326 aa16.37■□□□□ 0.21
MSH6-214ENST00000616033 ZNF692Q9BU19 519 aaPredicted RBP16.37■□□□□ 0.21
MSH6-214ENST00000616033 GGNBP2Q9H3C7 697 aa16.37■□□□□ 0.21
MSH6-214ENST00000616033 RBM27Q9P2N5 1060 aaKnown RBP16.37■□□□□ 0.21
MSH6-214ENST00000616033 ATF7IPQ6VMQ6 1270 aa16.37■□□□□ 0.21
MSH6-214ENST00000616033 FBLN1P23142 703 aa16.36■□□□□ 0.21
MSH6-214ENST00000616033 CALD1Q05682 793 aaKnown RBP16.36■□□□□ 0.21
MSH6-214ENST00000616033 STK26Q9P289 416 aa16.36■□□□□ 0.21
MSH6-214ENST00000616033 THUMPD2Q9BTF0 503 aaKnown RBP16.35■□□□□ 0.21
MSH6-214ENST00000616033 CDC42BPBQ9Y5S2 1711 aa16.35■□□□□ 0.21
MSH6-214ENST00000616033 PKP1Q13835 747 aa16.35■□□□□ 0.21
MSH6-214ENST00000616033 WDR63Q8IWG1 891 aa16.35■□□□□ 0.21
MSH6-214ENST00000616033 RIPK4P57078 832 aa16.34■□□□□ 0.21
MSH6-214ENST00000616033 DNTTIP2Q5QJE6 756 aaKnown RBP16.34■□□□□ 0.21
MSH6-214ENST00000616033 CHD1LQ86WJ1 897 aa16.34■□□□□ 0.21
MSH6-214ENST00000616033 PRPF40AO75400 957 aaKnown RBP16.34■□□□□ 0.21
MSH6-214ENST00000616033 K7ELQ4 463 aaPredicted RBP16.33■□□□□ 0.21
MSH6-214ENST00000616033 ZSCAN30Q86W11 494 aa16.33■□□□□ 0.21
MSH6-214ENST00000616033 CABP2Q9NPB3 220 aa16.33■□□□□ 0.21
MSH6-214ENST00000616033 SCAF11Q99590 1463 aaKnown RBP16.33■□□□□ 0.21
MSH6-214ENST00000616033 PTMAP06454 111 aaKnown RBP16.33■□□□□ 0.2
MSH6-214ENST00000616033 NINLQ9Y2I6 1382 aa16.33■□□□□ 0.2
MSH6-214ENST00000616033 AK9Q5TCS8 1911 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms